Wall clock time and date at job start Mon Mar 30 2020 06:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46965 * 110.99581 * 2 1 4 4 C 1.53048 * 109.35989 * 176.80895 * 3 2 1 5 5 N 1.46954 * 109.36723 * 58.40289 * 4 3 2 6 6 C 1.46898 * 111.00477 * 176.80972 * 5 4 3 7 7 C 1.50704 * 109.47066 * 313.79653 * 6 5 4 8 8 C 1.33637 * 122.74629 * 94.73166 * 7 6 5 9 9 S 1.76207 * 107.92167 * 179.97438 * 8 7 6 10 10 C 1.70973 * 90.27928 * 0.27301 * 9 8 7 11 11 N 1.29022 * 110.17231 * 359.84396 * 10 9 8 12 12 C 1.46965 * 110.87998 * 300.67525 * 5 4 3 13 13 C 1.46945 * 111.00304 * 236.19999 * 2 1 3 14 14 H 1.08999 * 109.49226 * 63.22062 * 13 2 1 15 15 C 1.50701 * 109.49004 * 303.17322 * 13 2 1 16 16 H 1.08004 * 119.99936 * 325.02577 * 15 13 2 17 17 C 1.37881 * 120.00259 * 145.01572 * 15 13 2 18 18 N 1.31517 * 119.99460 * 5.66267 * 17 15 13 19 19 Si 1.86795 * 120.00275 * 185.66365 * 17 15 13 20 20 H 1.48505 * 109.46924 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47171 * 120.00041 * 19 17 15 22 22 H 1.48501 * 109.47303 * 240.00335 * 19 17 15 23 23 H 1.09001 * 109.47149 * 189.39974 * 1 2 3 24 24 H 1.08996 * 109.47053 * 69.40101 * 1 2 3 25 25 H 1.08996 * 109.47476 * 309.39937 * 1 2 3 26 26 H 1.08993 * 109.48685 * 296.77690 * 3 2 1 27 27 H 1.08994 * 109.48723 * 56.84438 * 3 2 1 28 28 H 1.08996 * 109.49308 * 298.43325 * 4 3 2 29 29 H 1.08999 * 109.48724 * 178.36313 * 4 3 2 30 30 H 1.09001 * 109.47200 * 73.79849 * 6 5 4 31 31 H 1.09003 * 109.47321 * 193.80223 * 6 5 4 32 32 H 1.07998 * 126.04278 * 0.03573 * 8 7 6 33 33 H 1.08007 * 124.91471 * 179.83821 * 10 9 8 34 34 H 1.08996 * 109.48660 * 299.35789 * 12 5 4 35 35 H 1.08998 * 109.49214 * 179.28502 * 12 5 4 36 36 H 0.97004 * 119.99366 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3721 0.0000 4 6 3.5233 1.3292 0.0804 5 7 4.0501 0.5660 -1.0597 6 6 5.5191 0.5660 -1.0597 7 6 6.0214 1.9653 -0.8130 8 6 6.3497 2.4116 0.4031 9 16 6.8832 4.0832 0.2415 10 6 6.6039 4.0181 -1.4441 11 7 6.1667 2.8510 -1.7779 12 6 3.5235 -0.8061 -1.0597 13 6 1.9957 -0.7631 -1.1400 14 1 1.6938 -0.2821 -2.0703 15 6 1.4502 -2.1674 -1.1001 16 1 1.2841 -2.6554 -0.1510 17 6 1.1629 -2.8291 -2.2751 18 7 1.4681 -2.2799 -3.4305 19 14 0.3404 -4.5055 -2.2260 20 1 0.1027 -4.8991 -0.8139 21 1 -0.9565 -4.4419 -2.9466 22 1 1.2205 -5.5081 -2.8783 23 1 -0.3633 -1.0139 0.1678 24 1 -0.3633 0.3615 -0.9619 25 1 -0.3634 0.6522 0.7941 26 1 1.6937 1.8774 -0.9173 27 1 1.6012 1.9129 0.8602 28 1 3.8252 0.8481 1.0107 29 1 3.9176 2.3449 0.0512 30 1 5.8824 -0.0945 -0.2724 31 1 5.8824 0.2146 -2.0254 32 1 6.2983 1.8472 1.3224 33 1 6.7694 4.8357 -2.1301 34 1 3.8253 -1.3113 -0.1423 35 1 3.9178 -1.3470 -1.9199 36 1 1.2663 -2.7456 -4.2571 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259918146.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:17 Heat of formation + Delta-G solvation = 67.804281 kcal Electronic energy + Delta-G solvation = -18571.248821 eV Core-core repulsion = 15796.697883 eV Total energy + Delta-G solvation = -2774.550938 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.01575 -38.12187 -34.81735 -32.74518 -30.84379 -29.82839 -28.08318 -25.79915 -24.99327 -24.11930 -22.31070 -21.53047 -19.48214 -18.74192 -17.84463 -16.46344 -15.73408 -15.54576 -14.73115 -14.52307 -14.00760 -13.81685 -13.67593 -13.40763 -13.26961 -13.02261 -12.75222 -12.04661 -11.82890 -11.42627 -11.08307 -11.00126 -10.98122 -10.68186 -10.60841 -10.29636 -9.84128 -9.65025 -9.60615 -9.43743 -9.05678 -8.84586 -8.48743 -7.59938 -7.09055 -6.05280 -4.10906 0.71738 1.38499 1.70690 2.84398 3.28043 3.36695 3.41235 4.24572 4.38655 4.68436 5.05883 5.06355 5.22773 5.34432 5.37647 5.64954 5.80093 5.86762 5.97240 6.01541 6.21011 6.26065 6.31383 6.46171 6.60037 6.68250 6.74857 6.92281 7.25224 7.56511 7.67624 7.79751 7.83205 7.88865 8.07702 8.28020 8.64572 9.06171 9.55948 11.02152 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.034647 B = 0.004767 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.964459 B = 5872.323942 C = 6300.389692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.547 5.547 3 C 0.057 3.943 4 C 0.065 3.935 5 N -0.533 5.533 6 C 0.126 3.874 7 C 0.084 3.916 8 C -0.252 4.252 9 S 0.094 5.906 10 C 0.021 3.979 11 N -0.449 5.449 12 C 0.078 3.922 13 C 0.210 3.790 14 H 0.038 0.962 15 C -0.507 4.507 16 H 0.062 0.938 17 C 0.065 3.935 18 N -0.885 5.885 19 Si 0.893 3.107 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.073 0.927 24 H 0.014 0.986 25 H 0.037 0.963 26 H 0.028 0.972 27 H 0.059 0.941 28 H 0.031 0.969 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.175 0.825 33 H 0.197 0.803 34 H 0.023 0.977 35 H 0.075 0.925 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.233 11.280 6.942 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.272 5.272 3 C -0.072 4.072 4 C -0.064 4.064 5 N -0.258 5.258 6 C -0.005 4.005 7 C -0.048 4.048 8 C -0.392 4.392 9 S 0.345 5.655 10 C -0.277 4.277 11 N -0.162 5.162 12 C -0.049 4.049 13 C 0.104 3.896 14 H 0.056 0.944 15 C -0.546 4.546 16 H 0.080 0.920 17 C -0.138 4.138 18 N -0.523 5.523 19 Si 0.721 3.279 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.091 0.909 24 H 0.032 0.968 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.193 0.807 33 H 0.214 0.786 34 H 0.041 0.959 35 H 0.094 0.906 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.470 11.919 6.827 16.684 hybrid contribution -0.693 -1.596 -0.279 1.762 sum 8.777 10.323 6.548 15.049 Atomic orbital electron populations 1.22002 0.88486 1.01675 0.97780 1.62358 1.07236 1.10447 1.47209 1.22032 0.93952 0.92065 0.99137 1.22079 0.95237 0.97185 0.91863 1.62451 1.04041 1.17281 1.42029 1.20675 0.89709 0.87990 1.02089 1.20373 0.99544 0.97690 0.87165 1.26904 1.11232 0.98088 1.02953 1.83896 1.61717 1.11078 1.08797 1.28447 1.02988 0.98982 0.97322 1.66143 1.13537 1.00825 1.35705 1.22496 0.98215 0.84741 0.99443 1.19414 0.88910 0.93368 0.87924 0.94411 1.21020 1.42853 0.98199 0.92571 0.91996 1.25033 0.95262 0.98039 0.95494 1.69999 1.46477 1.38421 0.97373 0.86524 0.79254 0.83948 0.78217 1.19590 1.20978 1.21013 0.90864 0.96776 0.94392 0.95347 0.92270 0.95111 0.92138 0.93605 0.89214 0.80747 0.78590 0.95895 0.90640 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.03 9.19 60.06 0.55 1.58 16 2 N -0.55 -12.31 4.78 -236.14 -1.13 -13.44 16 3 C 0.06 1.13 5.61 -3.76 -0.02 1.11 16 4 C 0.06 1.19 4.82 -3.77 -0.02 1.18 16 5 N -0.53 -10.80 4.85 -235.91 -1.14 -11.95 16 6 C 0.13 2.15 5.73 -4.98 -0.03 2.12 16 7 C 0.08 1.28 4.79 -84.23 -0.40 0.88 16 8 C -0.25 -3.14 9.75 29.12 0.28 -2.86 16 9 S 0.09 0.94 23.22 -107.50 -2.50 -1.56 16 10 C 0.02 0.25 12.23 51.58 0.63 0.88 16 11 N -0.45 -6.96 10.53 -11.90 -0.13 -7.09 16 12 C 0.08 1.82 4.85 -3.76 -0.02 1.80 16 13 C 0.21 5.35 2.02 -68.81 -0.14 5.21 16 14 H 0.04 1.12 7.39 -51.93 -0.38 0.73 16 15 C -0.51 -13.76 7.05 -34.44 -0.24 -14.00 16 16 H 0.06 1.70 7.82 -52.48 -0.41 1.29 16 17 C 0.07 1.78 5.45 -17.82 -0.10 1.68 16 18 N -0.89 -25.50 12.85 55.43 0.71 -24.79 16 19 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H 0.07 1.60 7.22 -51.93 -0.38 1.23 16 24 H 0.01 0.30 8.13 -51.93 -0.42 -0.12 16 25 H 0.04 0.67 8.04 -51.93 -0.42 0.25 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 1.04 6.03 -51.93 -0.31 0.73 16 30 H 0.05 0.72 8.04 -51.93 -0.42 0.30 16 31 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 33 H 0.20 1.56 8.06 -52.48 -0.42 1.14 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 1.88 8.14 -51.93 -0.42 1.46 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 304.44 15.07 4.59 4.59 Total: -1.00 -30.20 304.44 -9.37 -39.57 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.25 Total: -0.94 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 0.50 Total: -0.42 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -1.69 Total: -57.26 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.50 Total: -1.56 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.20 -9.37 -39.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918146.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.373 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds