Wall clock time and date at job start Mon Mar 30 2020 06:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46965 * 110.99581 * 2 1 4 4 C 1.53048 * 109.35989 * 176.80895 * 3 2 1 5 5 N 1.46954 * 109.36723 * 58.40289 * 4 3 2 6 6 C 1.46898 * 111.00477 * 176.80972 * 5 4 3 7 7 C 1.50704 * 109.47066 * 313.79653 * 6 5 4 8 8 C 1.33637 * 122.74629 * 94.73166 * 7 6 5 9 9 S 1.76207 * 107.92167 * 179.97438 * 8 7 6 10 10 C 1.70973 * 90.27928 * 0.27301 * 9 8 7 11 11 N 1.29022 * 110.17231 * 359.84396 * 10 9 8 12 12 C 1.46965 * 110.87998 * 300.67525 * 5 4 3 13 13 C 1.46945 * 111.00304 * 236.19999 * 2 1 3 14 14 H 1.08999 * 109.49226 * 63.22062 * 13 2 1 15 15 C 1.50701 * 109.49004 * 303.17322 * 13 2 1 16 16 H 1.08004 * 119.99936 * 325.02577 * 15 13 2 17 17 C 1.37881 * 120.00259 * 145.01572 * 15 13 2 18 18 N 1.31517 * 119.99460 * 5.66267 * 17 15 13 19 19 Si 1.86795 * 120.00275 * 185.66365 * 17 15 13 20 20 H 1.48505 * 109.46924 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47171 * 120.00041 * 19 17 15 22 22 H 1.48501 * 109.47303 * 240.00335 * 19 17 15 23 23 H 1.09001 * 109.47149 * 189.39974 * 1 2 3 24 24 H 1.08996 * 109.47053 * 69.40101 * 1 2 3 25 25 H 1.08996 * 109.47476 * 309.39937 * 1 2 3 26 26 H 1.08993 * 109.48685 * 296.77690 * 3 2 1 27 27 H 1.08994 * 109.48723 * 56.84438 * 3 2 1 28 28 H 1.08996 * 109.49308 * 298.43325 * 4 3 2 29 29 H 1.08999 * 109.48724 * 178.36313 * 4 3 2 30 30 H 1.09001 * 109.47200 * 73.79849 * 6 5 4 31 31 H 1.09003 * 109.47321 * 193.80223 * 6 5 4 32 32 H 1.07998 * 126.04278 * 0.03573 * 8 7 6 33 33 H 1.08007 * 124.91471 * 179.83821 * 10 9 8 34 34 H 1.08996 * 109.48660 * 299.35789 * 12 5 4 35 35 H 1.08998 * 109.49214 * 179.28502 * 12 5 4 36 36 H 0.97004 * 119.99366 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3721 0.0000 4 6 3.5233 1.3292 0.0804 5 7 4.0501 0.5660 -1.0597 6 6 5.5191 0.5660 -1.0597 7 6 6.0214 1.9653 -0.8130 8 6 6.3497 2.4116 0.4031 9 16 6.8832 4.0832 0.2415 10 6 6.6039 4.0181 -1.4441 11 7 6.1667 2.8510 -1.7779 12 6 3.5235 -0.8061 -1.0597 13 6 1.9957 -0.7631 -1.1400 14 1 1.6938 -0.2821 -2.0703 15 6 1.4502 -2.1674 -1.1001 16 1 1.2841 -2.6554 -0.1510 17 6 1.1629 -2.8291 -2.2751 18 7 1.4681 -2.2799 -3.4305 19 14 0.3404 -4.5055 -2.2260 20 1 0.1027 -4.8991 -0.8139 21 1 -0.9565 -4.4419 -2.9466 22 1 1.2205 -5.5081 -2.8783 23 1 -0.3633 -1.0139 0.1678 24 1 -0.3633 0.3615 -0.9619 25 1 -0.3634 0.6522 0.7941 26 1 1.6937 1.8774 -0.9173 27 1 1.6012 1.9129 0.8602 28 1 3.8252 0.8481 1.0107 29 1 3.9176 2.3449 0.0512 30 1 5.8824 -0.0945 -0.2724 31 1 5.8824 0.2146 -2.0254 32 1 6.2983 1.8472 1.3224 33 1 6.7694 4.8357 -2.1301 34 1 3.8253 -1.3113 -0.1423 35 1 3.9178 -1.3470 -1.9199 36 1 1.2663 -2.7456 -4.2571 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259918146.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:14 Heat of formation + Delta-G solvation = 44.854037 kcal Electronic energy + Delta-G solvation = -18572.244018 eV Core-core repulsion = 15796.697883 eV Total energy + Delta-G solvation = -2775.546135 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 2.94 seconds Orbital eigenvalues (eV) -41.14439 -39.71992 -36.43030 -34.77279 -32.09402 -31.58021 -29.56571 -27.28620 -26.75606 -25.33981 -24.05466 -23.21305 -20.52421 -20.49091 -18.92445 -18.42831 -17.19396 -16.74443 -16.52468 -15.97562 -15.61115 -15.38223 -15.20681 -15.16919 -14.53344 -14.19844 -14.04353 -13.82489 -13.33101 -13.05367 -12.87244 -12.73979 -12.57093 -12.42973 -12.10887 -12.05390 -11.73681 -11.48897 -11.03730 -10.58966 -10.52644 -10.36303 -9.79702 -9.17520 -8.95229 -8.15565 -6.28434 -0.19549 0.52547 0.79694 1.40500 1.42511 1.55147 1.79550 2.40788 3.03590 3.24429 3.29570 3.46134 4.02713 4.13458 4.22412 4.31674 4.39595 4.45830 4.54176 4.63257 4.67339 4.70419 4.77514 4.85443 4.95796 5.00568 5.12160 5.17623 5.37170 5.54386 5.70602 5.99420 6.15429 6.25897 6.38679 6.73734 6.87681 6.94623 7.42654 8.92337 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.034647 B = 0.004767 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.964459 B = 5872.323942 C = 6300.389692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.550 5.550 3 C 0.055 3.945 4 C 0.074 3.926 5 N -0.551 5.551 6 C 0.129 3.871 7 C 0.058 3.942 8 C -0.255 4.255 9 S 0.176 5.824 10 C 0.014 3.986 11 N -0.499 5.499 12 C 0.095 3.905 13 C 0.216 3.784 14 H -0.012 1.012 15 C -0.516 4.516 16 H 0.057 0.943 17 C 0.016 3.984 18 N -0.923 5.923 19 Si 0.960 3.040 20 H -0.263 1.263 21 H -0.281 1.281 22 H -0.280 1.280 23 H 0.059 0.941 24 H -0.005 1.005 25 H 0.077 0.923 26 H 0.008 0.992 27 H 0.094 0.906 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.191 0.809 33 H 0.226 0.774 34 H 0.023 0.977 35 H 0.044 0.956 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.888 12.666 9.202 18.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.275 5.275 3 C -0.073 4.073 4 C -0.054 4.054 5 N -0.276 5.276 6 C -0.001 4.001 7 C -0.074 4.074 8 C -0.395 4.395 9 S 0.428 5.572 10 C -0.284 4.284 11 N -0.214 5.214 12 C -0.033 4.033 13 C 0.109 3.891 14 H 0.006 0.994 15 C -0.555 4.555 16 H 0.076 0.924 17 C -0.184 4.184 18 N -0.562 5.562 19 Si 0.785 3.215 20 H -0.187 1.187 21 H -0.206 1.206 22 H -0.206 1.206 23 H 0.078 0.922 24 H 0.013 0.987 25 H 0.096 0.904 26 H 0.026 0.974 27 H 0.112 0.888 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.208 0.792 33 H 0.243 0.757 34 H 0.041 0.959 35 H 0.063 0.937 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.135 13.333 9.113 19.066 hybrid contribution -0.824 -1.854 -0.921 2.228 sum 9.311 11.479 8.192 16.899 Atomic orbital electron populations 1.22015 0.87720 1.01738 0.98167 1.62331 1.08073 1.12033 1.45104 1.22191 0.95077 0.90434 0.99624 1.22049 0.94130 0.97844 0.91391 1.62280 1.06440 1.15328 1.43587 1.20548 0.87535 0.90432 1.01579 1.20029 1.02073 0.96900 0.88427 1.27164 1.09732 1.00141 1.02511 1.83638 1.59381 1.07877 1.06302 1.28965 1.01521 0.98485 0.99413 1.66100 1.15830 1.02372 1.37073 1.22038 0.96805 0.86517 0.97931 1.19167 0.90355 0.92728 0.86843 0.99424 1.21232 1.42846 0.99064 0.92396 0.92434 1.25816 0.95800 1.01768 0.95007 1.70140 1.47854 1.40168 0.98028 0.85478 0.78120 0.79384 0.78508 1.18678 1.20638 1.20575 0.92179 0.98676 0.90424 0.97372 0.88757 0.94099 0.90341 0.92335 0.91140 0.79174 0.75734 0.95891 0.93699 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.16 9.19 127.69 1.17 3.34 16 2 N -0.55 -24.72 4.78 -901.00 -4.30 -29.02 16 3 C 0.06 2.12 5.61 86.31 0.48 2.60 16 4 C 0.07 2.62 4.82 86.31 0.42 3.04 16 5 N -0.55 -22.76 4.85 -900.27 -4.37 -27.13 16 6 C 0.13 4.48 5.73 85.56 0.49 4.97 16 7 C 0.06 1.70 4.79 41.52 0.20 1.90 16 8 C -0.26 -5.67 9.75 66.78 0.65 -5.02 16 9 S 0.18 2.86 23.22 -56.49 -1.31 1.55 16 10 C 0.01 0.28 12.23 130.66 1.60 1.88 16 11 N -0.50 -15.05 10.53 -191.55 -2.02 -17.07 16 12 C 0.10 4.59 4.85 86.31 0.42 5.01 16 13 C 0.22 11.42 2.02 44.18 0.09 11.51 16 14 H -0.01 -0.76 7.39 -2.39 -0.02 -0.77 16 15 C -0.52 -28.76 7.05 25.60 0.18 -28.58 16 16 H 0.06 3.20 7.82 -2.91 -0.02 3.18 16 17 C 0.02 0.89 5.45 84.66 0.46 1.35 16 18 N -0.92 -55.37 12.85 21.45 0.28 -55.10 16 19 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 20 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 23 H 0.06 2.63 7.22 -2.39 -0.02 2.61 16 24 H -0.01 -0.25 8.13 -2.39 -0.02 -0.27 16 25 H 0.08 2.58 8.04 -2.39 -0.02 2.56 16 26 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.09 2.95 8.08 -2.39 -0.02 2.93 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 2.52 6.03 -2.39 -0.01 2.51 16 30 H 0.06 1.84 8.04 -2.39 -0.02 1.82 16 31 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.19 3.49 8.06 -2.91 -0.02 3.47 16 33 H 0.23 2.93 8.06 -2.91 -0.02 2.90 16 34 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.04 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -68.16 304.44 -2.48 -70.64 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 1.06 Total: 8.17 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 6.16 Total: 1.98 kcal Atomic # 7 Polarization: -117.91 SS G_CDS: -10.41 Total: -128.32 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.31 Total: 1.55 kcal Total: -68.16 -2.48 -70.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918146.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.493 kcal (2) G-P(sol) polarization free energy of solvation -68.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.95 seconds