Wall clock time and date at job start Mon Mar 30 2020 06:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46954 * 111.01374 * 2 1 4 4 C 1.53054 * 109.37872 * 183.16879 * 3 2 1 5 5 N 1.46952 * 109.36792 * 301.61181 * 4 3 2 6 6 C 1.46897 * 111.00367 * 183.18887 * 5 4 3 7 7 C 1.50702 * 109.47239 * 46.19748 * 6 5 4 8 8 C 1.33642 * 122.74713 * 94.73301 * 7 6 5 9 9 S 1.76196 * 107.92139 * 179.97438 * 8 7 6 10 10 C 1.70970 * 90.28507 * 0.27595 * 9 8 7 11 11 N 1.29032 * 110.16573 * 359.83901 * 10 9 8 12 12 C 1.46960 * 110.88079 * 59.31760 * 5 4 3 13 13 C 1.46951 * 111.00017 * 123.81472 * 2 1 3 14 14 H 1.09003 * 109.49190 * 296.79684 * 13 2 1 15 15 C 1.50699 * 109.49247 * 56.84346 * 13 2 1 16 16 H 1.08001 * 119.99618 * 24.92047 * 15 13 2 17 17 C 1.37874 * 120.00215 * 204.92517 * 15 13 2 18 18 N 1.31514 * 119.99827 * 357.85578 * 17 15 13 19 19 Si 1.86803 * 120.00077 * 177.85880 * 17 15 13 20 20 H 1.48500 * 109.46820 * 269.99931 * 19 17 15 21 21 H 1.48496 * 109.46995 * 29.99568 * 19 17 15 22 22 H 1.48502 * 109.47122 * 149.99770 * 19 17 15 23 23 H 1.09003 * 109.46820 * 290.59490 * 1 2 3 24 24 H 1.08994 * 109.47344 * 50.59321 * 1 2 3 25 25 H 1.09000 * 109.47386 * 170.59838 * 1 2 3 26 26 H 1.08995 * 109.47174 * 63.20606 * 3 2 1 27 27 H 1.09003 * 109.50796 * 303.15352 * 3 2 1 28 28 H 1.08997 * 109.48979 * 181.64014 * 4 3 2 29 29 H 1.09000 * 109.49014 * 61.58181 * 4 3 2 30 30 H 1.08997 * 109.46993 * 166.19713 * 6 5 4 31 31 H 1.08994 * 109.46756 * 286.19932 * 6 5 4 32 32 H 1.07996 * 126.03882 * 0.03405 * 8 7 6 33 33 H 1.08002 * 124.91890 * 179.84253 * 10 9 8 34 34 H 1.08998 * 109.49246 * 180.71568 * 12 5 4 35 35 H 1.08995 * 109.50570 * 60.65930 * 12 5 4 36 36 H 0.97005 * 120.00058 * 354.44435 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9960 1.3718 0.0000 4 6 3.5239 1.3289 -0.0798 5 7 4.0502 0.5656 1.0603 6 6 5.5192 0.5656 1.0608 7 6 6.0216 1.9649 0.8143 8 6 6.3497 2.8001 1.8047 9 16 6.8834 4.3156 1.0815 10 6 6.6046 3.6783 -0.4803 11 7 6.1674 2.4673 -0.3951 12 6 3.5235 -0.8064 1.0600 13 6 1.9957 -0.7635 1.1398 14 1 1.6935 -0.2828 2.0703 15 6 1.4505 -2.1678 1.0994 16 1 1.1321 -2.5966 0.1606 17 6 1.3581 -2.9052 2.2607 18 7 1.7848 -2.3987 3.3969 19 14 0.6270 -4.6238 2.2202 20 1 -0.8382 -4.5438 2.4482 21 1 0.8887 -5.2419 0.8956 22 1 1.2492 -5.4516 3.2845 23 1 -0.3633 0.3615 0.9620 24 1 -0.3634 0.6523 -0.7940 25 1 -0.3634 -1.0138 -0.1679 26 1 1.6939 1.8771 0.9173 27 1 1.6020 1.9131 -0.8602 28 1 3.9182 2.3447 -0.0506 29 1 3.8261 0.8479 -1.0101 30 1 5.8821 0.2141 2.0265 31 1 5.8827 -0.0948 0.2736 32 1 6.2979 2.5840 2.8615 33 1 6.7704 4.2120 -1.4045 34 1 3.9175 -1.3474 1.9203 35 1 3.8257 -1.3120 0.1429 36 1 2.2373 -1.5407 3.4059 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259918150.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:22 Heat of formation + Delta-G solvation = 65.959768 kcal Electronic energy + Delta-G solvation = -18645.409545 eV Core-core repulsion = 15870.778623 eV Total energy + Delta-G solvation = -2774.630922 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.10926 -38.23690 -34.87378 -33.04374 -31.00154 -29.62609 -27.98543 -25.80410 -24.65299 -24.32130 -22.37280 -21.65226 -19.52836 -18.92706 -18.02028 -16.79013 -15.78300 -15.59737 -14.56985 -14.38520 -14.09884 -13.95946 -13.82767 -13.67869 -13.26329 -13.03150 -12.80840 -11.97686 -11.59113 -11.49688 -11.27353 -11.09067 -10.91693 -10.79573 -10.41540 -10.18954 -10.08258 -9.89225 -9.70533 -9.48261 -8.93615 -8.54485 -8.42047 -7.72459 -7.22272 -6.36173 -4.10213 0.69889 1.34815 1.67289 2.75393 3.43405 3.46710 3.62843 4.16301 4.49013 4.64872 4.98771 5.02928 5.19922 5.33061 5.39416 5.63919 5.74321 5.88072 5.89820 5.99891 6.14186 6.17843 6.28428 6.36298 6.45864 6.58225 6.62582 6.80046 7.02164 7.30392 7.54062 7.66104 7.71342 7.91058 8.05115 8.40506 8.60854 8.87215 9.63291 11.00404 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032767 B = 0.004873 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.307257 B = 5744.249205 C = 6236.882010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.540 5.540 3 C 0.056 3.944 4 C 0.072 3.928 5 N -0.539 5.539 6 C 0.126 3.874 7 C 0.074 3.926 8 C -0.233 4.233 9 S 0.097 5.903 10 C 0.019 3.981 11 N -0.461 5.461 12 C 0.071 3.929 13 C 0.207 3.793 14 H 0.011 0.989 15 C -0.585 4.585 16 H 0.057 0.943 17 C 0.022 3.978 18 N -0.911 5.911 19 Si 1.071 2.929 20 H -0.288 1.288 21 H -0.288 1.288 22 H -0.285 1.285 23 H 0.012 0.988 24 H 0.040 0.960 25 H 0.075 0.925 26 H 0.026 0.974 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.037 0.963 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.179 0.821 33 H 0.197 0.803 34 H 0.071 0.929 35 H 0.030 0.970 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.888 12.180 -4.661 15.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.265 5.265 3 C -0.073 4.073 4 C -0.057 4.057 5 N -0.264 5.264 6 C -0.005 4.005 7 C -0.057 4.057 8 C -0.373 4.373 9 S 0.348 5.652 10 C -0.280 4.280 11 N -0.175 5.175 12 C -0.057 4.057 13 C 0.100 3.900 14 H 0.029 0.971 15 C -0.624 4.624 16 H 0.076 0.924 17 C -0.183 4.183 18 N -0.546 5.546 19 Si 0.899 3.101 20 H -0.215 1.215 21 H -0.214 1.214 22 H -0.211 1.211 23 H 0.031 0.969 24 H 0.059 0.941 25 H 0.093 0.907 26 H 0.044 0.956 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.196 0.804 33 H 0.214 0.786 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.699 11.560 -3.832 14.966 hybrid contribution 0.218 0.632 -0.855 1.085 sum 8.916 12.192 -4.687 15.815 Atomic orbital electron populations 1.22043 0.88256 1.01923 0.97804 1.62210 1.07319 1.10613 1.46360 1.22098 0.94416 0.91735 0.99093 1.21999 0.94287 0.97324 0.92083 1.62558 1.04279 1.17041 1.42544 1.20672 0.89635 0.88588 1.01558 1.20325 1.00291 0.98873 0.86230 1.26869 1.09720 0.95693 1.04993 1.83929 1.61669 1.17312 1.02292 1.28358 1.03200 0.94534 1.01935 1.66223 1.14270 1.11001 1.25985 1.22572 0.98088 0.85162 0.99865 1.19432 0.89282 0.93984 0.87292 0.97108 1.21881 1.45880 0.98000 0.96679 0.92435 1.25835 0.95930 1.04515 0.92042 1.70740 1.36180 1.20506 1.27207 0.83522 0.76299 0.74874 0.75405 1.21465 1.21367 1.21109 0.96910 0.94112 0.90673 0.95610 0.92042 0.91858 0.94435 0.89360 0.93353 0.80367 0.78614 0.91073 0.95165 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.02 9.19 60.07 0.55 1.57 16 2 N -0.54 -12.37 4.77 -236.13 -1.13 -13.49 16 3 C 0.06 1.11 5.61 -3.77 -0.02 1.09 16 4 C 0.07 1.38 4.88 -3.77 -0.02 1.36 16 5 N -0.54 -10.83 4.85 -235.92 -1.14 -11.97 16 6 C 0.13 2.14 5.73 -4.98 -0.03 2.11 16 7 C 0.07 1.11 4.81 -84.23 -0.40 0.70 16 8 C -0.23 -2.96 11.12 29.12 0.32 -2.63 16 9 S 0.10 0.96 23.22 -107.50 -2.50 -1.53 16 10 C 0.02 0.20 12.23 51.59 0.63 0.83 16 11 N -0.46 -6.75 9.13 -11.90 -0.11 -6.86 16 12 C 0.07 1.65 4.76 -3.76 -0.02 1.63 16 13 C 0.21 5.28 1.56 -68.81 -0.11 5.17 16 14 H 0.01 0.32 6.96 -51.93 -0.36 -0.04 16 15 C -0.59 -16.13 7.20 -34.44 -0.25 -16.38 16 16 H 0.06 1.62 7.52 -52.49 -0.39 1.23 16 17 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 18 N -0.91 -26.85 13.59 55.43 0.75 -26.09 16 19 Si 1.07 24.84 29.90 -169.99 -5.08 19.75 16 20 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H 0.01 0.27 8.13 -51.93 -0.42 -0.15 16 24 H 0.04 0.73 8.04 -51.93 -0.42 0.31 16 25 H 0.07 1.66 7.03 -51.93 -0.37 1.29 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 28 H 0.06 1.15 5.97 -51.93 -0.31 0.84 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 1.39 8.10 -51.93 -0.42 0.97 16 31 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 32 H 0.18 2.00 8.06 -52.49 -0.42 1.58 16 33 H 0.20 1.46 8.06 -52.49 -0.42 1.03 16 34 H 0.07 1.75 7.67 -51.93 -0.40 1.35 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.27 8.07 6.30 -40.82 -0.26 7.82 16 LS Contribution 301.75 15.07 4.55 4.55 Total: -1.00 -30.67 301.75 -9.19 -39.86 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -5.10 Total: -0.19 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 0.56 Total: -4.03 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: -1.63 Total: -58.42 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.08 Total: 19.75 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.50 Total: -1.53 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.67 -9.19 -39.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918150.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.822 kcal (2) G-P(sol) polarization free energy of solvation -30.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds