Wall clock time and date at job start Mon Mar 30 2020 06:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46954 * 111.01374 * 2 1 4 4 C 1.53054 * 109.37872 * 183.16879 * 3 2 1 5 5 N 1.46952 * 109.36792 * 301.61181 * 4 3 2 6 6 C 1.46897 * 111.00367 * 183.18887 * 5 4 3 7 7 C 1.50702 * 109.47239 * 46.19748 * 6 5 4 8 8 C 1.33642 * 122.74713 * 94.73301 * 7 6 5 9 9 S 1.76196 * 107.92139 * 179.97438 * 8 7 6 10 10 C 1.70970 * 90.28507 * 0.27595 * 9 8 7 11 11 N 1.29032 * 110.16573 * 359.83901 * 10 9 8 12 12 C 1.46960 * 110.88079 * 59.31760 * 5 4 3 13 13 C 1.46951 * 111.00017 * 123.81472 * 2 1 3 14 14 H 1.09003 * 109.49190 * 296.79684 * 13 2 1 15 15 C 1.50699 * 109.49247 * 56.84346 * 13 2 1 16 16 H 1.08001 * 119.99618 * 24.92047 * 15 13 2 17 17 C 1.37874 * 120.00215 * 204.92517 * 15 13 2 18 18 N 1.31514 * 119.99827 * 357.85578 * 17 15 13 19 19 Si 1.86803 * 120.00077 * 177.85880 * 17 15 13 20 20 H 1.48500 * 109.46820 * 269.99931 * 19 17 15 21 21 H 1.48496 * 109.46995 * 29.99568 * 19 17 15 22 22 H 1.48502 * 109.47122 * 149.99770 * 19 17 15 23 23 H 1.09003 * 109.46820 * 290.59490 * 1 2 3 24 24 H 1.08994 * 109.47344 * 50.59321 * 1 2 3 25 25 H 1.09000 * 109.47386 * 170.59838 * 1 2 3 26 26 H 1.08995 * 109.47174 * 63.20606 * 3 2 1 27 27 H 1.09003 * 109.50796 * 303.15352 * 3 2 1 28 28 H 1.08997 * 109.48979 * 181.64014 * 4 3 2 29 29 H 1.09000 * 109.49014 * 61.58181 * 4 3 2 30 30 H 1.08997 * 109.46993 * 166.19713 * 6 5 4 31 31 H 1.08994 * 109.46756 * 286.19932 * 6 5 4 32 32 H 1.07996 * 126.03882 * 0.03405 * 8 7 6 33 33 H 1.08002 * 124.91890 * 179.84253 * 10 9 8 34 34 H 1.08998 * 109.49246 * 180.71568 * 12 5 4 35 35 H 1.08995 * 109.50570 * 60.65930 * 12 5 4 36 36 H 0.97005 * 120.00058 * 354.44435 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9960 1.3718 0.0000 4 6 3.5239 1.3289 -0.0798 5 7 4.0502 0.5656 1.0603 6 6 5.5192 0.5656 1.0608 7 6 6.0216 1.9649 0.8143 8 6 6.3497 2.8001 1.8047 9 16 6.8834 4.3156 1.0815 10 6 6.6046 3.6783 -0.4803 11 7 6.1674 2.4673 -0.3951 12 6 3.5235 -0.8064 1.0600 13 6 1.9957 -0.7635 1.1398 14 1 1.6935 -0.2828 2.0703 15 6 1.4505 -2.1678 1.0994 16 1 1.1321 -2.5966 0.1606 17 6 1.3581 -2.9052 2.2607 18 7 1.7848 -2.3987 3.3969 19 14 0.6270 -4.6238 2.2202 20 1 -0.8382 -4.5438 2.4482 21 1 0.8887 -5.2419 0.8956 22 1 1.2492 -5.4516 3.2845 23 1 -0.3633 0.3615 0.9620 24 1 -0.3634 0.6523 -0.7940 25 1 -0.3634 -1.0138 -0.1679 26 1 1.6939 1.8771 0.9173 27 1 1.6020 1.9131 -0.8602 28 1 3.9182 2.3447 -0.0506 29 1 3.8261 0.8479 -1.0101 30 1 5.8821 0.2141 2.0265 31 1 5.8827 -0.0948 0.2736 32 1 6.2979 2.5840 2.8615 33 1 6.7704 4.2120 -1.4045 34 1 3.9175 -1.3474 1.9203 35 1 3.8257 -1.3120 0.1429 36 1 2.2373 -1.5407 3.4059 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259918150.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:20 Heat of formation + Delta-G solvation = 43.133414 kcal Electronic energy + Delta-G solvation = -18646.399370 eV Core-core repulsion = 15870.778623 eV Total energy + Delta-G solvation = -2775.620747 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.25052 -39.86718 -36.51393 -35.09162 -32.18039 -31.47968 -29.47136 -27.24894 -26.52074 -25.57284 -24.15357 -23.38348 -20.87381 -20.43047 -19.15040 -18.66458 -17.15662 -16.83614 -16.40866 -15.93331 -15.72829 -15.56073 -15.46460 -15.30721 -14.54920 -14.20123 -14.04978 -13.69284 -13.40889 -13.23339 -12.89859 -12.71250 -12.65688 -12.26632 -12.21025 -11.98741 -11.91098 -11.65548 -10.66120 -10.61024 -10.53963 -10.39296 -9.87898 -9.34699 -9.10784 -8.59493 -6.34480 -0.20924 0.48336 0.76907 1.54756 1.62511 1.70868 1.81215 2.56326 2.98906 3.15556 3.29492 3.30889 3.94775 4.01425 4.14803 4.20904 4.31618 4.43215 4.44959 4.47183 4.57958 4.61527 4.68313 4.72399 4.80929 4.87989 5.03193 5.09958 5.14485 5.31588 5.77761 5.93910 6.01879 6.10655 6.43293 6.46562 6.71565 6.76753 7.47084 8.76427 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032767 B = 0.004873 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.307257 B = 5744.249205 C = 6236.882010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.550 5.550 3 C 0.055 3.945 4 C 0.083 3.917 5 N -0.545 5.545 6 C 0.128 3.872 7 C 0.050 3.950 8 C -0.246 4.246 9 S 0.172 5.828 10 C 0.018 3.982 11 N -0.500 5.500 12 C 0.089 3.911 13 C 0.212 3.788 14 H -0.027 1.027 15 C -0.593 4.593 16 H 0.049 0.951 17 C -0.024 4.024 18 N -0.933 5.933 19 Si 1.117 2.883 20 H -0.274 1.274 21 H -0.272 1.272 22 H -0.284 1.284 23 H 0.000 1.000 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.017 0.983 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.026 0.974 30 H 0.093 0.907 31 H 0.037 0.963 32 H 0.187 0.813 33 H 0.231 0.769 34 H 0.050 0.950 35 H 0.016 0.984 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.381 13.880 -5.676 17.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.275 5.275 3 C -0.073 4.073 4 C -0.045 4.045 5 N -0.270 5.270 6 C -0.002 4.002 7 C -0.081 4.081 8 C -0.386 4.386 9 S 0.424 5.576 10 C -0.280 4.280 11 N -0.215 5.215 12 C -0.040 4.040 13 C 0.104 3.896 14 H -0.009 1.009 15 C -0.632 4.632 16 H 0.067 0.933 17 C -0.223 4.223 18 N -0.570 5.570 19 Si 0.939 3.061 20 H -0.200 1.200 21 H -0.197 1.197 22 H -0.210 1.210 23 H 0.018 0.982 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.035 0.965 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.044 0.956 30 H 0.111 0.889 31 H 0.055 0.945 32 H 0.204 0.796 33 H 0.247 0.753 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.203 13.303 -4.868 16.893 hybrid contribution 0.142 0.288 -0.572 0.656 sum 9.345 13.591 -5.440 17.368 Atomic orbital electron populations 1.22051 0.87270 1.01902 0.98487 1.62186 1.08393 1.12285 1.44640 1.22225 0.94964 0.90174 0.99944 1.21924 0.93722 0.97851 0.91023 1.62460 1.06589 1.14764 1.43157 1.20602 0.87395 0.90723 1.01473 1.19978 1.02553 0.98172 0.87406 1.27111 1.08855 0.97311 1.05335 1.83703 1.59535 1.14129 1.00231 1.28963 1.01303 0.93646 1.04093 1.66185 1.16418 1.12857 1.26027 1.22119 0.96857 0.86968 0.98035 1.19235 0.90530 0.93199 0.86601 1.00922 1.22091 1.45688 0.99068 0.96306 0.93312 1.27204 0.95735 1.07761 0.91589 1.70858 1.37754 1.20307 1.28104 0.82930 0.76287 0.70795 0.76105 1.20016 1.19736 1.20951 0.98186 0.90283 0.92155 0.96481 0.88978 0.90087 0.95615 0.88865 0.94508 0.79579 0.75278 0.93189 0.96620 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.14 9.19 127.69 1.17 3.31 16 2 N -0.55 -25.29 4.77 -900.97 -4.30 -29.59 16 3 C 0.06 2.17 5.61 86.31 0.48 2.65 16 4 C 0.08 3.16 4.88 86.31 0.42 3.58 16 5 N -0.54 -22.35 4.85 -900.30 -4.37 -26.72 16 6 C 0.13 4.43 5.73 85.56 0.49 4.92 16 7 C 0.05 1.46 4.81 41.52 0.20 1.66 16 8 C -0.25 -5.82 11.12 66.78 0.74 -5.08 16 9 S 0.17 2.84 23.22 -56.49 -1.31 1.53 16 10 C 0.02 0.33 12.23 130.65 1.60 1.93 16 11 N -0.50 -13.83 9.13 -191.55 -1.75 -15.58 16 12 C 0.09 4.31 4.76 86.31 0.41 4.73 16 13 C 0.21 11.19 1.56 44.18 0.07 11.26 16 14 H -0.03 -1.60 6.96 -2.39 -0.02 -1.62 16 15 C -0.59 -33.53 7.20 25.60 0.18 -33.35 16 16 H 0.05 2.80 7.52 -2.91 -0.02 2.77 16 17 C -0.02 -1.35 5.46 84.65 0.46 -0.89 16 18 N -0.93 -56.74 13.59 21.45 0.29 -56.44 16 19 Si 1.12 50.30 29.90 68.60 2.05 52.35 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 23 H 0.00 -0.02 8.13 -2.39 -0.02 -0.04 16 24 H 0.08 2.67 8.04 -2.39 -0.02 2.65 16 25 H 0.06 2.67 7.03 -2.39 -0.02 2.65 16 26 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.09 3.04 8.08 -2.39 -0.02 3.02 16 28 H 0.08 2.83 5.97 -2.39 -0.01 2.82 16 29 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 3.03 8.10 -2.39 -0.02 3.01 16 31 H 0.04 1.34 8.08 -2.39 -0.02 1.32 16 32 H 0.19 3.94 8.06 -2.91 -0.02 3.91 16 33 H 0.23 2.48 8.06 -2.91 -0.02 2.45 16 34 H 0.05 2.60 7.67 -2.39 -0.02 2.58 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.26 16.09 6.30 -92.70 -0.58 15.51 16 Total: -1.00 -68.05 301.75 -1.91 -69.96 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.25 Total: 9.77 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 6.23 Total: -5.27 kcal Atomic # 7 Polarization: -118.21 SS G_CDS: -10.13 Total: -128.34 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 2.05 Total: 52.35 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -1.31 Total: 1.53 kcal Total: -68.05 -1.91 -69.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918150.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.092 kcal (2) G-P(sol) polarization free energy of solvation -68.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds