Wall clock time and date at job start Mon Mar 30 2020 05:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35309 * 126.04011 * 2 1 4 4 N 1.34956 * 107.74774 * 179.97438 * 3 2 1 5 5 H 0.97003 * 126.03437 * 180.02562 * 4 3 2 6 6 N 1.40081 * 107.92109 * 359.75536 * 4 3 2 7 7 C 1.30842 * 108.20537 * 0.41264 * 6 4 3 8 8 C 1.50702 * 125.89563 * 179.85625 * 7 6 4 9 9 N 1.46901 * 109.46836 * 269.69324 * 8 7 6 10 10 C 1.46463 * 111.00260 * 68.78486 * 9 8 7 11 11 C 1.53250 * 109.86070 * 197.76396 * 10 9 8 12 12 S 1.81895 * 108.67083 * 297.89894 * 11 10 9 13 13 C 1.82443 * 101.70464 * 51.25005 * 12 11 10 14 14 C 1.46475 * 110.99886 * 194.76819 * 9 8 7 15 15 H 1.09005 * 109.39955 * 282.34882 * 14 9 8 16 16 C 1.50699 * 109.40915 * 42.18922 * 14 9 8 17 17 H 1.08000 * 119.99459 * 54.90217 * 16 14 9 18 18 C 1.37874 * 120.00188 * 234.90598 * 16 14 9 19 19 N 1.31512 * 119.99797 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 119.99996 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46933 * 60.00187 * 20 18 16 22 22 H 1.48503 * 109.47416 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47364 * 300.00319 * 20 18 16 24 24 H 1.08997 * 109.47043 * 270.02883 * 1 2 3 25 25 H 1.09004 * 109.47046 * 30.02614 * 1 2 3 26 26 H 1.09002 * 109.47121 * 150.02926 * 1 2 3 27 27 H 1.08001 * 126.13220 * 0.02562 * 3 2 1 28 28 H 1.08998 * 109.47153 * 149.69350 * 8 7 6 29 29 H 1.08994 * 109.47318 * 29.68962 * 8 7 6 30 30 H 1.09000 * 109.40666 * 77.64388 * 10 9 8 31 31 H 1.09003 * 109.40516 * 317.88050 * 10 9 8 32 32 H 1.09008 * 109.62904 * 57.70019 * 11 10 9 33 33 H 1.08999 * 109.63288 * 178.09062 * 11 10 9 34 34 H 1.09000 * 109.60897 * 189.04748 * 13 12 11 35 35 H 1.08995 * 109.57863 * 68.50362 * 13 12 11 36 36 H 0.97005 * 119.99985 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3031 1.0941 0.0000 4 7 3.5845 0.6705 0.0006 5 1 4.3725 1.2362 0.0011 6 7 3.5754 -0.7302 0.0066 7 6 2.3299 -1.1310 0.0006 8 6 1.8627 -2.5638 0.0009 9 7 1.7114 -3.0297 -1.3840 10 6 3.0139 -3.1479 -2.0433 11 6 2.8254 -3.1969 -3.5634 12 16 1.8493 -4.6737 -3.9818 13 6 0.4196 -4.5019 -2.8615 14 6 0.9393 -4.2732 -1.4381 15 1 1.5767 -5.1081 -1.1467 16 6 -0.2280 -4.1795 -0.4896 17 1 -0.9241 -3.3577 -0.5696 18 6 -0.4072 -5.1429 0.4803 19 7 0.4408 -6.1433 0.5781 20 14 -1.8537 -5.0264 1.6565 21 1 -3.1223 -5.0536 0.8850 22 1 -1.8216 -6.1759 2.5961 23 1 -1.7676 -3.7574 2.4229 24 1 -0.3633 0.0005 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3633 -0.8903 -0.5134 27 1 1.9725 2.1223 0.0004 28 1 0.9037 -2.6331 0.5144 29 1 2.5959 -3.1849 0.5151 30 1 3.5071 -4.0609 -1.7099 31 1 3.6312 -2.2882 -1.7825 32 1 2.2978 -2.3029 -3.8960 33 1 3.7985 -3.2507 -4.0515 34 1 -0.1795 -5.4120 -2.8909 35 1 -0.1868 -3.6508 -3.1711 36 1 0.3146 -6.8213 1.2602 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260000802.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:48 Heat of formation + Delta-G solvation = 75.878716 kcal Electronic energy + Delta-G solvation = -18932.000657 eV Core-core repulsion = 16157.799853 eV Total energy + Delta-G solvation = -2774.200804 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.84891 -37.29922 -33.05106 -32.45106 -31.26124 -30.39658 -29.05616 -25.99172 -25.37801 -24.70218 -22.10305 -20.51213 -19.73999 -18.67926 -17.39610 -16.83082 -15.52686 -15.04707 -14.59475 -14.33837 -14.10862 -13.73858 -13.18983 -12.97495 -12.71932 -12.58998 -12.33152 -12.21525 -11.78329 -11.50868 -11.28913 -11.12720 -10.99973 -10.81668 -10.71713 -10.41421 -10.06442 -9.77136 -9.40109 -9.02024 -8.83468 -8.59640 -8.03226 -7.24173 -6.88582 -6.18637 -4.25442 2.21167 2.65801 3.13649 3.21426 3.23352 3.29971 3.30600 3.43385 4.29184 4.89098 5.09098 5.13522 5.29630 5.64315 5.70393 5.74066 5.84137 5.97338 6.09536 6.20606 6.32347 6.37353 6.41469 6.46841 6.53208 6.66678 6.69985 6.77976 7.02959 7.20722 7.52404 7.59502 7.70863 7.78738 8.10412 8.20535 8.50757 8.90263 9.38709 10.86687 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.013531 B = 0.009419 C = 0.006300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.765781 B = 2972.029320 C = 4443.642669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.214 4.214 3 C 0.037 3.963 4 N -0.490 5.490 5 H 0.432 0.568 6 N -0.303 5.303 7 C 0.106 3.894 8 C 0.148 3.852 9 N -0.542 5.542 10 C 0.052 3.948 11 C -0.056 4.056 12 S -0.342 6.342 13 C -0.030 4.030 14 C 0.197 3.803 15 H 0.060 0.940 16 C -0.511 4.511 17 H 0.065 0.935 18 C 0.070 3.930 19 N -0.881 5.881 20 Si 0.894 3.106 21 H -0.274 1.274 22 H -0.287 1.287 23 H -0.272 1.272 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.080 0.920 27 H 0.167 0.833 28 H 0.121 0.879 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.578 11.579 -1.270 11.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.226 4.226 3 C -0.109 4.109 4 N -0.197 5.197 5 H 0.275 0.725 6 N -0.127 5.127 7 C -0.062 4.062 8 C 0.019 3.981 9 N -0.269 5.269 10 C -0.078 4.078 11 C -0.205 4.205 12 S -0.115 6.115 13 C -0.178 4.178 14 C 0.090 3.910 15 H 0.078 0.922 16 C -0.552 4.552 17 H 0.083 0.917 18 C -0.135 4.135 19 N -0.518 5.518 20 Si 0.721 3.279 21 H -0.199 1.199 22 H -0.213 1.213 23 H -0.197 1.197 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.099 0.901 27 H 0.185 0.815 28 H 0.138 0.862 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.798 10.555 -2.215 11.434 hybrid contribution -0.857 1.049 1.798 2.251 sum 2.941 11.604 -0.417 11.978 Atomic orbital electron populations 1.20097 0.89392 1.02649 1.01269 1.20085 0.97362 0.91223 1.13923 1.22231 0.84938 0.99520 1.04259 1.46137 1.06685 1.05907 1.60978 0.72526 1.77281 1.21250 0.88241 1.25878 1.22713 0.89418 0.97683 0.96378 1.20298 1.02152 0.84721 0.90936 1.61307 1.15169 1.35193 1.15205 1.22182 0.92693 1.00779 0.92175 1.23263 1.00697 0.97436 0.99135 1.86576 1.30174 1.36718 1.58056 1.23987 0.93881 1.03899 0.96015 1.19639 0.93943 0.87357 0.90016 0.92211 1.20905 1.10138 1.09756 1.14376 0.91678 1.25058 0.96184 0.95062 0.97201 1.69900 1.35802 1.12100 1.33987 0.86605 0.82721 0.77862 0.80664 1.19905 1.21252 1.19748 0.92581 0.93000 0.90115 0.81541 0.86166 0.94656 0.94559 0.90727 0.90341 0.89368 0.88768 0.91099 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.04 36.01 0.36 -0.76 16 2 C -0.21 -3.46 6.10 -105.06 -0.64 -4.10 16 3 C 0.04 0.48 11.90 -17.22 -0.20 0.27 16 4 N -0.49 -6.58 7.36 30.45 0.22 -6.36 16 5 H 0.43 4.13 8.96 -182.61 -1.64 2.49 16 6 N -0.30 -5.38 11.63 33.67 0.39 -4.99 16 7 C 0.11 1.97 5.97 -82.40 -0.49 1.48 16 8 C 0.15 3.12 4.92 -4.97 -0.02 3.10 16 9 N -0.54 -11.55 4.28 -229.86 -0.98 -12.54 16 10 C 0.05 1.03 5.27 -3.93 -0.02 1.01 16 11 C -0.06 -1.03 6.67 37.29 0.25 -0.78 16 12 S -0.34 -6.98 22.44 -107.50 -2.41 -9.39 16 13 C -0.03 -0.65 5.96 37.29 0.22 -0.43 16 14 C 0.20 4.65 2.21 -68.97 -0.15 4.50 16 15 H 0.06 1.64 6.70 -51.93 -0.35 1.29 16 16 C -0.51 -12.59 6.02 -34.44 -0.21 -12.80 16 17 H 0.07 1.58 7.81 -52.49 -0.41 1.17 16 18 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.88 -23.90 12.61 55.43 0.70 -23.20 16 20 Si 0.89 19.71 29.54 -169.99 -5.02 14.69 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.08 1.37 7.92 -51.93 -0.41 0.96 16 27 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.12 2.69 5.81 -51.93 -0.30 2.39 16 29 H 0.04 0.80 8.09 -51.93 -0.42 0.38 16 30 H 0.04 0.78 7.91 -51.93 -0.41 0.37 16 31 H 0.07 1.45 6.19 -51.93 -0.32 1.13 16 32 H 0.08 1.42 8.14 -51.92 -0.42 0.99 16 33 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.09 2.13 8.14 -51.93 -0.42 1.70 16 35 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 304.31 15.07 4.59 4.59 Total: -1.00 -28.01 304.31 -9.88 -37.88 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.35 Total: 6.14 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -1.01 Total: -6.83 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.33 Total: -47.09 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 16 Polarization: -6.98 SS G_CDS: -2.41 Total: -9.39 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.01 -9.88 -37.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260000802.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.764 kcal (2) G-P(sol) polarization free energy of solvation -28.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds