Wall clock time and date at job start Mon Mar 30 2020 05:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35309 * 126.04011 * 2 1 4 4 N 1.34956 * 107.74774 * 179.97438 * 3 2 1 5 5 H 0.97003 * 126.03437 * 180.02562 * 4 3 2 6 6 N 1.40081 * 107.92109 * 359.75536 * 4 3 2 7 7 C 1.30842 * 108.20537 * 0.41264 * 6 4 3 8 8 C 1.50702 * 125.89563 * 179.85625 * 7 6 4 9 9 N 1.46901 * 109.46836 * 269.69324 * 8 7 6 10 10 C 1.46463 * 111.00260 * 68.78486 * 9 8 7 11 11 C 1.53250 * 109.86070 * 197.76396 * 10 9 8 12 12 S 1.81895 * 108.67083 * 297.89894 * 11 10 9 13 13 C 1.82443 * 101.70464 * 51.25005 * 12 11 10 14 14 C 1.46475 * 110.99886 * 194.76819 * 9 8 7 15 15 H 1.09005 * 109.39955 * 282.34882 * 14 9 8 16 16 C 1.50699 * 109.40915 * 42.18922 * 14 9 8 17 17 H 1.08000 * 119.99459 * 54.90217 * 16 14 9 18 18 C 1.37874 * 120.00188 * 234.90598 * 16 14 9 19 19 N 1.31512 * 119.99797 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 119.99996 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46933 * 60.00187 * 20 18 16 22 22 H 1.48503 * 109.47416 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47364 * 300.00319 * 20 18 16 24 24 H 1.08997 * 109.47043 * 270.02883 * 1 2 3 25 25 H 1.09004 * 109.47046 * 30.02614 * 1 2 3 26 26 H 1.09002 * 109.47121 * 150.02926 * 1 2 3 27 27 H 1.08001 * 126.13220 * 0.02562 * 3 2 1 28 28 H 1.08998 * 109.47153 * 149.69350 * 8 7 6 29 29 H 1.08994 * 109.47318 * 29.68962 * 8 7 6 30 30 H 1.09000 * 109.40666 * 77.64388 * 10 9 8 31 31 H 1.09003 * 109.40516 * 317.88050 * 10 9 8 32 32 H 1.09008 * 109.62904 * 57.70019 * 11 10 9 33 33 H 1.08999 * 109.63288 * 178.09062 * 11 10 9 34 34 H 1.09000 * 109.60897 * 189.04748 * 13 12 11 35 35 H 1.08995 * 109.57863 * 68.50362 * 13 12 11 36 36 H 0.97005 * 119.99985 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3031 1.0941 0.0000 4 7 3.5845 0.6705 0.0006 5 1 4.3725 1.2362 0.0011 6 7 3.5754 -0.7302 0.0066 7 6 2.3299 -1.1310 0.0006 8 6 1.8627 -2.5638 0.0009 9 7 1.7114 -3.0297 -1.3840 10 6 3.0139 -3.1479 -2.0433 11 6 2.8254 -3.1969 -3.5634 12 16 1.8493 -4.6737 -3.9818 13 6 0.4196 -4.5019 -2.8615 14 6 0.9393 -4.2732 -1.4381 15 1 1.5767 -5.1081 -1.1467 16 6 -0.2280 -4.1795 -0.4896 17 1 -0.9241 -3.3577 -0.5696 18 6 -0.4072 -5.1429 0.4803 19 7 0.4408 -6.1433 0.5781 20 14 -1.8537 -5.0264 1.6565 21 1 -3.1223 -5.0536 0.8850 22 1 -1.8216 -6.1759 2.5961 23 1 -1.7676 -3.7574 2.4229 24 1 -0.3633 0.0005 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3633 -0.8903 -0.5134 27 1 1.9725 2.1223 0.0004 28 1 0.9037 -2.6331 0.5144 29 1 2.5959 -3.1849 0.5151 30 1 3.5071 -4.0609 -1.7099 31 1 3.6312 -2.2882 -1.7825 32 1 2.2978 -2.3029 -3.8960 33 1 3.7985 -3.2507 -4.0515 34 1 -0.1795 -5.4120 -2.8909 35 1 -0.1868 -3.6508 -3.1711 36 1 0.3146 -6.8213 1.2602 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260000802.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:47 Heat of formation + Delta-G solvation = 57.866475 kcal Electronic energy + Delta-G solvation = -18932.781726 eV Core-core repulsion = 16157.799853 eV Total energy + Delta-G solvation = -2774.981873 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.07471 -39.03729 -34.92229 -33.77502 -32.56739 -32.16496 -30.61404 -27.30849 -27.13325 -26.30400 -23.81958 -21.76887 -21.45249 -20.07936 -18.76313 -18.48236 -17.30077 -16.79963 -16.16908 -15.89135 -15.65792 -15.15414 -14.82167 -14.68811 -14.22311 -13.99987 -13.74785 -13.43731 -13.32888 -13.13865 -12.87391 -12.80732 -12.65579 -12.52346 -12.40541 -12.13642 -11.66860 -11.36366 -11.14903 -10.74798 -10.46274 -10.26854 -9.20279 -9.04163 -8.57471 -8.15133 -6.27081 1.01441 1.04993 1.46798 1.47379 1.55190 1.72331 1.84106 2.15415 2.43091 3.08218 3.41130 3.88826 4.02464 4.06520 4.25292 4.37958 4.48696 4.57994 4.59715 4.64348 4.74804 4.81243 4.94377 4.96134 5.06247 5.10513 5.26191 5.33407 5.50280 5.55062 5.70959 5.84291 5.94697 6.34592 6.60664 6.68807 6.87791 6.92416 7.40058 8.90446 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.013531 B = 0.009419 C = 0.006300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.765781 B = 2972.029320 C = 4443.642669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.246 4.246 3 C 0.070 3.930 4 N -0.470 5.470 5 H 0.451 0.549 6 N -0.334 5.334 7 C 0.082 3.918 8 C 0.160 3.840 9 N -0.534 5.534 10 C 0.056 3.944 11 C -0.046 4.046 12 S -0.344 6.344 13 C -0.026 4.026 14 C 0.203 3.797 15 H 0.016 0.984 16 C -0.510 4.510 17 H 0.067 0.933 18 C 0.024 3.976 19 N -0.921 5.921 20 Si 0.954 3.046 21 H -0.266 1.266 22 H -0.291 1.291 23 H -0.263 1.263 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.049 0.951 27 H 0.220 0.780 28 H 0.101 0.899 29 H 0.002 0.998 30 H 0.012 0.988 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.462 14.807 -1.764 15.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.257 4.257 3 C -0.077 4.077 4 N -0.180 5.180 5 H 0.298 0.702 6 N -0.159 5.159 7 C -0.084 4.084 8 C 0.031 3.969 9 N -0.260 5.260 10 C -0.074 4.074 11 C -0.194 4.194 12 S -0.117 6.117 13 C -0.175 4.175 14 C 0.095 3.905 15 H 0.034 0.966 16 C -0.550 4.550 17 H 0.086 0.914 18 C -0.178 4.178 19 N -0.560 5.560 20 Si 0.779 3.221 21 H -0.191 1.191 22 H -0.217 1.217 23 H -0.187 1.187 24 H 0.077 0.923 25 H 0.099 0.901 26 H 0.068 0.932 27 H 0.237 0.763 28 H 0.119 0.881 29 H 0.020 0.980 30 H 0.031 0.969 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.136 0.864 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.696 13.802 -2.717 14.544 hybrid contribution -0.693 0.159 1.926 2.053 sum 3.003 13.961 -0.791 14.302 Atomic orbital electron populations 1.20028 0.88801 1.02500 1.01432 1.20324 0.98173 0.91294 1.15954 1.22895 0.83666 1.00872 1.00310 1.46166 1.08116 1.04595 1.59110 0.70222 1.77175 1.20897 0.90826 1.27035 1.22297 0.90677 0.96768 0.98654 1.19986 1.00182 0.86588 0.90182 1.61353 1.15779 1.33422 1.15462 1.22161 0.91863 0.99978 0.93355 1.23326 1.01855 0.96536 0.97690 1.86549 1.29737 1.38519 1.56893 1.23724 0.94620 1.03554 0.95571 1.19421 0.93293 0.86821 0.90953 0.96640 1.21096 1.10120 1.09402 1.14401 0.91441 1.25771 0.98484 0.94728 0.98769 1.70050 1.37821 1.13144 1.34958 0.85657 0.79892 0.77857 0.78707 1.19090 1.21689 1.18730 0.92314 0.90082 0.93235 0.76317 0.88077 0.97968 0.96933 0.89731 0.89221 0.86440 0.90053 0.90339 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.93 10.04 71.24 0.71 -1.21 16 2 C -0.25 -7.41 6.10 -20.15 -0.12 -7.53 16 3 C 0.07 1.51 11.90 83.54 0.99 2.50 16 4 N -0.47 -11.00 7.36 -57.59 -0.42 -11.43 16 5 H 0.45 6.81 8.96 -213.33 -1.91 4.89 16 6 N -0.33 -11.47 11.63 -47.38 -0.55 -12.02 16 7 C 0.08 3.03 5.97 43.10 0.26 3.29 16 8 C 0.16 7.03 4.92 85.56 0.42 7.45 16 9 N -0.53 -23.36 4.28 -881.16 -3.77 -27.12 16 10 C 0.06 2.26 5.27 86.47 0.46 2.72 16 11 C -0.05 -1.60 6.67 72.07 0.48 -1.12 16 12 S -0.34 -13.90 22.44 -56.49 -1.27 -15.16 16 13 C -0.03 -1.17 5.96 72.07 0.43 -0.74 16 14 C 0.20 9.96 2.21 44.33 0.10 10.06 16 15 H 0.02 0.91 6.70 -2.38 -0.02 0.89 16 16 C -0.51 -25.96 6.02 25.60 0.15 -25.80 16 17 H 0.07 3.35 7.81 -2.91 -0.02 3.33 16 18 C 0.02 1.23 5.46 84.65 0.46 1.70 16 19 N -0.92 -52.37 12.61 21.45 0.27 -52.10 16 20 Si 0.95 41.25 29.54 68.60 2.03 43.28 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 24 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.05 1.66 7.92 -2.39 -0.02 1.64 16 27 H 0.22 2.35 8.06 -2.91 -0.02 2.33 16 28 H 0.10 4.76 5.81 -2.39 -0.01 4.74 16 29 H 0.00 0.10 8.09 -2.39 -0.02 0.08 16 30 H 0.01 0.56 7.91 -2.39 -0.02 0.54 16 31 H 0.08 3.25 6.19 -2.39 -0.01 3.24 16 32 H 0.09 3.01 8.14 -2.38 -0.02 2.99 16 33 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 34 H 0.08 3.80 8.14 -2.39 -0.02 3.78 16 35 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 36 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 Total: -1.00 -63.51 304.31 -0.19 -63.71 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -0.83 Total: 19.54 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 4.34 Total: -8.69 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -4.47 Total: -102.67 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: -13.90 SS G_CDS: -1.27 Total: -15.16 kcal Total: -63.51 -0.19 -63.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260000802.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.572 kcal (2) G-P(sol) polarization free energy of solvation -63.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds