Wall clock time and date at job start Mon Mar 30 2020 06:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46958 * 111.00154 * 2 1 4 4 C 1.53041 * 109.36281 * 176.81313 * 3 2 1 5 5 N 1.46963 * 109.36850 * 58.40172 * 4 3 2 6 6 C 1.46900 * 111.00111 * 176.80951 * 5 4 3 7 7 C 1.50703 * 109.47133 * 293.79765 * 6 5 4 8 8 C 1.33641 * 126.03640 * 90.01899 * 7 6 5 9 9 N 1.31774 * 114.50001 * 179.97438 * 8 7 6 10 10 C 1.29034 * 117.12480 * 0.02562 * 9 8 7 11 11 S 1.70974 * 110.16586 * 0.02562 * 10 9 8 12 12 C 1.46958 * 110.87879 * 300.67895 * 5 4 3 13 13 H 1.09001 * 109.48599 * 299.35061 * 12 5 4 14 14 C 1.50693 * 109.48892 * 179.30926 * 12 5 4 15 15 H 1.08005 * 120.00340 * 359.97438 * 14 12 5 16 16 C 1.37879 * 120.00047 * 180.02562 * 14 12 5 17 17 N 1.31518 * 119.99859 * 179.97438 * 16 14 12 18 18 Si 1.86794 * 119.99905 * 359.97438 * 16 14 12 19 19 H 1.48502 * 109.47489 * 90.00034 * 18 16 14 20 20 H 1.48504 * 109.47331 * 210.00010 * 18 16 14 21 21 H 1.48503 * 109.47542 * 330.00149 * 18 16 14 22 22 C 1.46963 * 110.99583 * 236.19895 * 2 1 3 23 23 H 1.08997 * 109.47207 * 183.80314 * 1 2 3 24 24 H 1.09006 * 109.47076 * 303.79668 * 1 2 3 25 25 H 1.09001 * 109.47434 * 63.80044 * 1 2 3 26 26 H 1.09001 * 109.48599 * 296.78019 * 3 2 1 27 27 H 1.09002 * 109.48699 * 56.82124 * 3 2 1 28 28 H 1.09002 * 109.49179 * 298.42973 * 4 3 2 29 29 H 1.09007 * 109.49135 * 178.36797 * 4 3 2 30 30 H 1.08999 * 109.46547 * 173.80177 * 6 5 4 31 31 H 1.08994 * 109.47162 * 53.79900 * 6 5 4 32 32 H 1.07997 * 122.74801 * 0.02562 * 8 7 6 33 33 H 1.07998 * 124.91318 * 179.97438 * 10 9 8 34 34 H 0.97001 * 119.99346 * 180.02562 * 17 16 14 35 35 H 1.08996 * 109.48483 * 63.22335 * 22 2 1 36 36 H 1.08997 * 109.49108 * 303.15491 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5234 1.3290 0.0803 5 7 4.0501 0.5658 -1.0599 6 6 5.5191 0.5658 -1.0599 7 6 6.0214 1.9650 -1.3066 8 6 6.2838 2.8826 -0.3711 9 7 6.7146 4.0354 -0.8420 10 6 6.8298 4.1417 -2.1228 11 16 6.3655 2.6805 -2.8795 12 6 3.5234 -0.8062 -1.0599 13 1 3.8253 -1.3116 -0.1425 14 6 4.0690 -1.5542 -2.2488 15 1 4.7396 -1.0602 -2.9364 16 6 3.7112 -2.8689 -2.4597 17 7 4.1870 -3.5215 -3.4977 18 14 2.5508 -3.7232 -1.2710 19 1 1.1492 -3.5291 -1.7218 20 1 2.8618 -5.1748 -1.2326 21 1 2.7186 -3.1449 0.0865 22 6 1.9956 -0.7633 -1.1401 23 1 -0.3633 -1.0254 0.0682 24 1 -0.3633 0.5717 0.8541 25 1 -0.3634 0.4537 -0.9221 26 1 1.6938 1.8773 -0.9174 27 1 1.6010 1.9130 0.8601 28 1 3.8253 0.8479 1.0106 29 1 3.9178 2.3448 0.0512 30 1 5.8823 -0.0948 -1.8471 31 1 5.8824 0.2143 -0.0942 32 1 6.1543 2.6943 0.6844 33 1 7.1694 5.0259 -2.6416 34 1 3.9350 -4.4464 -3.6461 35 1 1.6936 -0.2821 -2.0704 36 1 1.6012 -1.7790 -1.1110 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260232821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:50 Heat of formation + Delta-G solvation = 75.270372 kcal Electronic energy + Delta-G solvation = -18790.721826 eV Core-core repulsion = 16016.494642 eV Total energy + Delta-G solvation = -2774.227184 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.53572 -38.59462 -35.23812 -33.03885 -31.03120 -30.40396 -28.04262 -25.76060 -25.35360 -23.88448 -22.43504 -21.33599 -19.76336 -19.03114 -17.72154 -16.94860 -15.91797 -15.35178 -14.70659 -14.46712 -14.28922 -14.02136 -13.98102 -13.67780 -13.52769 -13.19890 -12.62792 -12.27440 -12.07788 -11.59555 -11.55296 -11.23255 -11.12774 -10.72529 -10.53504 -10.41927 -10.21867 -9.55546 -9.39573 -9.31616 -8.93819 -8.69966 -8.62630 -7.89313 -7.50868 -6.18661 -4.19736 0.97112 1.65340 2.08217 3.04497 3.19243 3.32532 3.37626 4.29657 4.44468 4.52974 4.68094 5.13102 5.28360 5.40906 5.41401 5.51623 5.57284 5.70472 5.78530 5.82927 6.03134 6.06994 6.09884 6.19254 6.26520 6.32328 6.41568 6.46087 6.66682 7.04297 7.26586 7.48936 7.59228 7.79285 7.90021 7.90738 8.51139 8.85519 9.42010 10.93145 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.007191 C = 0.005700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.137257 B = 3892.748748 C = 4910.696234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.552 5.552 3 C 0.063 3.937 4 C 0.052 3.948 5 N -0.521 5.521 6 C 0.129 3.871 7 C -0.179 4.179 8 C 0.012 3.988 9 N -0.473 5.473 10 C -0.013 4.013 11 S 0.151 5.849 12 C 0.195 3.805 13 H 0.011 0.989 14 C -0.515 4.515 15 H 0.085 0.915 16 C 0.076 3.924 17 N -0.892 5.892 18 Si 0.876 3.124 19 H -0.279 1.279 20 H -0.294 1.294 21 H -0.258 1.258 22 C 0.056 3.944 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.022 0.978 26 H 0.037 0.963 27 H 0.068 0.932 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.048 0.952 32 H 0.169 0.831 33 H 0.192 0.808 34 H 0.266 0.734 35 H 0.042 0.958 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.043 10.881 4.524 11.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.277 5.277 3 C -0.065 4.065 4 C -0.077 4.077 5 N -0.246 5.246 6 C 0.000 4.000 7 C -0.302 4.302 8 C -0.139 4.139 9 N -0.187 5.187 10 C -0.310 4.310 11 S 0.403 5.597 12 C 0.087 3.913 13 H 0.029 0.971 14 C -0.553 4.553 15 H 0.103 0.897 16 C -0.127 4.127 17 N -0.529 5.529 18 Si 0.705 3.295 19 H -0.206 1.206 20 H -0.221 1.221 21 H -0.183 1.183 22 C -0.071 4.071 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.052 0.948 29 H 0.088 0.912 30 H 0.129 0.871 31 H 0.066 0.934 32 H 0.186 0.814 33 H 0.209 0.791 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.144 10.864 3.713 11.482 hybrid contribution -0.935 -0.639 1.387 1.791 sum -0.791 10.225 5.100 11.454 Atomic orbital electron populations 1.22311 0.88551 1.01635 0.99798 1.62286 1.06839 1.13583 1.44970 1.22044 0.94913 0.89589 0.99944 1.22184 0.94261 0.98454 0.92803 1.62034 1.05249 1.16625 1.40682 1.20472 0.88800 0.88465 1.02296 1.26220 1.06581 1.02786 0.94565 1.21679 1.03288 0.87891 1.01069 1.66286 1.15406 1.24267 1.12725 1.28245 1.06270 1.03263 0.93233 1.84238 1.58199 1.06932 1.10377 1.19715 0.89707 0.84415 0.97472 0.97126 1.20935 1.29389 0.95735 1.09232 0.89707 1.24906 0.95754 0.97099 0.94979 1.69868 1.44222 1.11062 1.27769 0.87020 0.81085 0.78387 0.82982 1.20573 1.22127 1.18299 1.22762 0.97628 0.96459 0.90224 0.91940 0.92039 0.95933 0.94510 0.91362 0.94792 0.91153 0.87135 0.93408 0.81421 0.79135 0.92401 0.93943 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.60 60.06 0.58 0.98 16 2 N -0.55 -10.38 4.97 -242.75 -1.21 -11.58 16 3 C 0.06 1.06 5.62 -3.77 -0.02 1.04 16 4 C 0.05 0.89 5.37 -3.77 -0.02 0.87 16 5 N -0.52 -10.39 4.51 -229.32 -1.03 -11.43 16 6 C 0.13 2.37 5.29 -4.97 -0.03 2.34 16 7 C -0.18 -2.87 5.51 -35.92 -0.20 -3.07 16 8 C 0.01 0.18 9.77 -19.19 -0.19 -0.01 16 9 N -0.47 -7.10 10.54 -15.75 -0.17 -7.26 16 10 C -0.01 -0.17 12.23 51.59 0.63 0.46 16 11 S 0.15 2.15 23.22 -107.50 -2.50 -0.35 16 12 C 0.19 4.47 1.54 -68.81 -0.11 4.37 16 13 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 14 C -0.51 -13.62 8.38 -34.44 -0.29 -13.91 16 15 H 0.09 2.42 6.76 -52.48 -0.35 2.06 16 16 C 0.08 2.08 5.45 -17.82 -0.10 1.99 16 17 N -0.89 -26.04 13.96 55.43 0.77 -25.27 16 18 Si 0.88 21.14 24.36 -169.99 -4.14 17.00 16 19 H -0.28 -6.58 6.88 56.52 0.39 -6.20 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.26 -6.15 6.53 56.52 0.37 -5.78 16 22 C 0.06 1.24 4.37 -3.76 -0.02 1.22 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 25 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.11 6.15 -51.93 -0.32 0.79 16 30 H 0.11 2.27 5.99 -51.93 -0.31 1.96 16 31 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 32 H 0.17 2.25 8.06 -52.49 -0.42 1.83 16 33 H 0.19 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 1.46 3.33 -51.93 -0.17 1.28 16 LS Contribution 294.14 15.07 4.43 4.43 Total: -1.00 -29.46 294.14 -8.53 -37.99 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -4.94 Total: 0.18 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 0.25 Total: -3.71 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -1.63 Total: -55.54 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.14 Total: 17.00 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.50 Total: -0.35 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.46 -8.53 -37.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260232821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.257 kcal (2) G-P(sol) polarization free energy of solvation -29.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds