Wall clock time and date at job start Mon Mar 30 2020 06:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46958 * 111.00154 * 2 1 4 4 C 1.53041 * 109.36281 * 176.81313 * 3 2 1 5 5 N 1.46963 * 109.36850 * 58.40172 * 4 3 2 6 6 C 1.46900 * 111.00111 * 176.80951 * 5 4 3 7 7 C 1.50703 * 109.47133 * 293.79765 * 6 5 4 8 8 C 1.33641 * 126.03640 * 90.01899 * 7 6 5 9 9 N 1.31774 * 114.50001 * 179.97438 * 8 7 6 10 10 C 1.29034 * 117.12480 * 0.02562 * 9 8 7 11 11 S 1.70974 * 110.16586 * 0.02562 * 10 9 8 12 12 C 1.46958 * 110.87879 * 300.67895 * 5 4 3 13 13 H 1.09001 * 109.48599 * 299.35061 * 12 5 4 14 14 C 1.50693 * 109.48892 * 179.30926 * 12 5 4 15 15 H 1.08005 * 120.00340 * 359.97438 * 14 12 5 16 16 C 1.37879 * 120.00047 * 180.02562 * 14 12 5 17 17 N 1.31518 * 119.99859 * 179.97438 * 16 14 12 18 18 Si 1.86794 * 119.99905 * 359.97438 * 16 14 12 19 19 H 1.48502 * 109.47489 * 90.00034 * 18 16 14 20 20 H 1.48504 * 109.47331 * 210.00010 * 18 16 14 21 21 H 1.48503 * 109.47542 * 330.00149 * 18 16 14 22 22 C 1.46963 * 110.99583 * 236.19895 * 2 1 3 23 23 H 1.08997 * 109.47207 * 183.80314 * 1 2 3 24 24 H 1.09006 * 109.47076 * 303.79668 * 1 2 3 25 25 H 1.09001 * 109.47434 * 63.80044 * 1 2 3 26 26 H 1.09001 * 109.48599 * 296.78019 * 3 2 1 27 27 H 1.09002 * 109.48699 * 56.82124 * 3 2 1 28 28 H 1.09002 * 109.49179 * 298.42973 * 4 3 2 29 29 H 1.09007 * 109.49135 * 178.36797 * 4 3 2 30 30 H 1.08999 * 109.46547 * 173.80177 * 6 5 4 31 31 H 1.08994 * 109.47162 * 53.79900 * 6 5 4 32 32 H 1.07997 * 122.74801 * 0.02562 * 8 7 6 33 33 H 1.07998 * 124.91318 * 179.97438 * 10 9 8 34 34 H 0.97001 * 119.99346 * 180.02562 * 17 16 14 35 35 H 1.08996 * 109.48483 * 63.22335 * 22 2 1 36 36 H 1.08997 * 109.49108 * 303.15491 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5234 1.3290 0.0803 5 7 4.0501 0.5658 -1.0599 6 6 5.5191 0.5658 -1.0599 7 6 6.0214 1.9650 -1.3066 8 6 6.2838 2.8826 -0.3711 9 7 6.7146 4.0354 -0.8420 10 6 6.8298 4.1417 -2.1228 11 16 6.3655 2.6805 -2.8795 12 6 3.5234 -0.8062 -1.0599 13 1 3.8253 -1.3116 -0.1425 14 6 4.0690 -1.5542 -2.2488 15 1 4.7396 -1.0602 -2.9364 16 6 3.7112 -2.8689 -2.4597 17 7 4.1870 -3.5215 -3.4977 18 14 2.5508 -3.7232 -1.2710 19 1 1.1492 -3.5291 -1.7218 20 1 2.8618 -5.1748 -1.2326 21 1 2.7186 -3.1449 0.0865 22 6 1.9956 -0.7633 -1.1401 23 1 -0.3633 -1.0254 0.0682 24 1 -0.3633 0.5717 0.8541 25 1 -0.3634 0.4537 -0.9221 26 1 1.6938 1.8773 -0.9174 27 1 1.6010 1.9130 0.8601 28 1 3.8253 0.8479 1.0106 29 1 3.9178 2.3448 0.0512 30 1 5.8823 -0.0948 -1.8471 31 1 5.8824 0.2143 -0.0942 32 1 6.1543 2.6943 0.6844 33 1 7.1694 5.0259 -2.6416 34 1 3.9350 -4.4464 -3.6461 35 1 1.6936 -0.2821 -2.0704 36 1 1.6012 -1.7790 -1.1110 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260232821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:48 Heat of formation + Delta-G solvation = 52.246553 kcal Electronic energy + Delta-G solvation = -18791.720213 eV Core-core repulsion = 16016.494642 eV Total energy + Delta-G solvation = -2775.225572 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.81203 -40.01865 -36.69210 -35.00860 -32.54851 -31.96725 -29.37974 -27.21996 -26.99557 -25.18218 -23.94893 -22.94742 -20.95508 -20.59005 -19.10681 -18.77941 -17.53718 -16.59259 -16.20310 -15.97397 -15.94376 -15.54959 -15.41074 -14.94937 -14.78727 -14.72608 -14.38070 -13.68810 -13.47580 -13.15422 -12.99367 -12.71405 -12.58544 -12.46984 -12.13071 -11.95545 -11.94031 -11.34946 -11.17593 -10.75558 -10.53870 -10.16151 -9.85333 -9.35957 -9.08673 -8.32412 -6.36462 -0.17032 0.51157 0.95500 1.25807 1.34504 1.44759 1.89560 2.27512 2.93140 3.08521 3.19391 3.51588 3.94748 4.03093 4.16426 4.23890 4.33179 4.43281 4.46187 4.49766 4.62011 4.63714 4.68458 4.70753 4.88258 4.93258 4.99257 5.04570 5.22901 5.27705 5.46195 5.93150 6.02022 6.06758 6.30275 6.60887 6.70486 6.76754 7.28772 8.82903 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.007191 C = 0.005700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.137257 B = 3892.748748 C = 4910.696234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.561 5.561 3 C 0.063 3.937 4 C 0.054 3.946 5 N -0.532 5.532 6 C 0.139 3.861 7 C -0.207 4.207 8 C 0.026 3.974 9 N -0.494 5.494 10 C 0.016 3.984 11 S 0.138 5.862 12 C 0.201 3.799 13 H -0.004 1.004 14 C -0.510 4.510 15 H 0.051 0.949 16 C 0.024 3.976 17 N -0.938 5.938 18 Si 0.935 3.065 19 H -0.268 1.268 20 H -0.294 1.294 21 H -0.251 1.251 22 C 0.065 3.935 23 H 0.061 0.939 24 H 0.093 0.907 25 H 0.025 0.975 26 H 0.031 0.969 27 H 0.104 0.896 28 H 0.036 0.964 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.183 0.817 33 H 0.232 0.768 34 H 0.267 0.733 35 H 0.025 0.975 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.941 13.003 6.301 14.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.286 5.286 3 C -0.064 4.064 4 C -0.074 4.074 5 N -0.257 5.257 6 C 0.009 3.991 7 C -0.329 4.329 8 C -0.125 4.125 9 N -0.208 5.208 10 C -0.281 4.281 11 S 0.390 5.610 12 C 0.093 3.907 13 H 0.014 0.986 14 C -0.548 4.548 15 H 0.069 0.931 16 C -0.174 4.174 17 N -0.577 5.577 18 Si 0.762 3.238 19 H -0.195 1.195 20 H -0.222 1.222 21 H -0.175 1.175 22 C -0.063 4.063 23 H 0.080 0.920 24 H 0.111 0.889 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.122 0.878 28 H 0.054 0.946 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.200 0.800 33 H 0.248 0.752 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.849 13.009 5.504 14.151 hybrid contribution -0.535 -1.143 0.789 1.488 sum -1.384 11.866 6.292 13.503 Atomic orbital electron populations 1.22420 0.86296 1.02334 1.01362 1.62262 1.08962 1.14532 1.42821 1.22167 0.94359 0.88678 1.01236 1.22258 0.94866 0.98716 0.91560 1.61983 1.06276 1.14859 1.42570 1.20193 0.88001 0.89721 1.01165 1.25886 1.09217 1.02026 0.95814 1.21878 1.01634 0.87469 1.01542 1.66385 1.16735 1.24107 1.13526 1.28933 1.03283 1.03324 0.92585 1.84335 1.58545 1.08025 1.10071 1.19444 0.90767 0.85777 0.94751 0.98625 1.21133 1.28236 0.95964 1.09505 0.93125 1.25629 0.97421 0.97915 0.96478 1.70000 1.46285 1.11533 1.29920 0.86057 0.79524 0.77019 0.81162 1.19452 1.22175 1.17548 1.22434 0.96544 0.96356 0.90958 0.92034 0.88872 0.95625 0.95057 0.87813 0.94622 0.89410 0.90614 0.93062 0.80023 0.75171 0.92349 0.95642 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 9.60 127.69 1.23 1.89 16 2 N -0.56 -19.76 4.97 -921.93 -4.58 -24.34 16 3 C 0.06 1.93 5.62 86.31 0.49 2.42 16 4 C 0.05 1.75 5.37 86.30 0.46 2.21 16 5 N -0.53 -21.24 4.51 -879.42 -3.97 -25.21 16 6 C 0.14 5.20 5.29 85.56 0.45 5.65 16 7 C -0.21 -6.52 5.51 24.64 0.14 -6.39 16 8 C 0.03 0.74 9.77 83.66 0.82 1.56 16 9 N -0.49 -13.45 10.54 -203.75 -2.15 -15.60 16 10 C 0.02 0.36 12.23 130.65 1.60 1.96 16 11 S 0.14 3.82 23.22 -56.49 -1.31 2.51 16 12 C 0.20 9.35 1.54 44.17 0.07 9.42 16 13 H 0.00 -0.18 7.20 -2.39 -0.02 -0.20 16 14 C -0.51 -28.10 8.38 25.60 0.21 -27.89 16 15 H 0.05 3.08 6.76 -2.91 -0.02 3.06 16 16 C 0.02 1.38 5.45 84.65 0.46 1.84 16 17 N -0.94 -56.85 13.96 21.45 0.30 -56.55 16 18 Si 0.93 44.34 24.36 68.60 1.67 46.01 16 19 H -0.27 -12.17 6.88 99.48 0.68 -11.48 16 20 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 21 H -0.25 -11.52 6.53 99.48 0.65 -10.87 16 22 C 0.07 2.82 4.37 86.31 0.38 3.20 16 23 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.09 2.03 8.13 -2.38 -0.02 2.01 16 25 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.10 2.47 8.13 -2.39 -0.02 2.45 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.14 16 29 H 0.09 2.54 6.15 -2.38 -0.01 2.53 16 30 H 0.08 3.33 5.99 -2.39 -0.01 3.32 16 31 H 0.05 1.83 8.12 -2.39 -0.02 1.81 16 32 H 0.18 4.44 8.06 -2.91 -0.02 4.41 16 33 H 0.23 3.23 8.06 -2.91 -0.02 3.21 16 34 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.05 2.33 3.33 -2.39 -0.01 2.32 16 Total: -1.00 -65.03 294.14 -2.74 -67.77 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.99 Total: 9.53 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 6.30 Total: -4.12 kcal Atomic # 7 Polarization: -111.31 SS G_CDS: -10.39 Total: -121.70 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.67 Total: 46.01 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -1.31 Total: 2.51 kcal Total: -65.03 -2.74 -67.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260232821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.019 kcal (2) G-P(sol) polarization free energy of solvation -65.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds