Wall clock time and date at job start Mon Mar 30 2020 04:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00058 * 2 1 4 4 H 1.48498 * 109.46814 * 239.99615 * 3 2 1 5 5 H 1.48499 * 109.46855 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47376 * 119.99529 * 3 2 1 7 7 C 1.37870 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99942 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00290 * 0.02562 * 7 2 1 10 10 H 1.08999 * 108.13783 * 305.82653 * 9 7 2 11 11 C 1.45384 * 108.24747 * 62.89098 * 9 7 2 12 12 C 1.55297 * 109.85313 * 184.98472 * 11 9 7 13 13 S 1.79393 * 109.72244 * 288.76845 * 12 11 9 14 14 C 1.82413 * 106.81350 * 86.88764 * 13 12 11 15 15 C 1.54642 * 110.54339 * 319.25986 * 14 13 12 16 16 N 1.45585 * 108.46690 * 321.26310 * 15 14 13 17 17 C 1.46905 * 110.99945 * 227.96985 * 16 15 14 18 18 C 1.50699 * 109.46595 * 50.84434 * 17 16 15 19 19 C 1.39868 * 126.04234 * 90.02659 * 18 17 16 20 20 N 1.30837 * 108.20756 * 179.97438 * 19 18 17 21 21 N 1.40090 * 108.20249 * 0.02562 * 20 19 18 22 22 H 0.97000 * 126.03904 * 179.97438 * 21 20 19 23 23 C 1.34949 * 107.92452 * 359.75521 * 21 20 19 24 24 H 0.97006 * 119.99781 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.40801 * 305.10420 * 11 9 7 26 26 H 1.08996 * 109.40628 * 64.86910 * 11 9 7 27 27 H 1.09003 * 109.42610 * 48.84211 * 12 11 9 28 28 H 1.08994 * 109.42638 * 168.73865 * 12 11 9 29 29 H 1.09001 * 109.26381 * 79.53346 * 14 13 12 30 30 H 1.09000 * 109.26643 * 198.98577 * 14 13 12 31 31 H 1.09009 * 109.63591 * 80.95506 * 15 14 13 32 32 H 1.08993 * 109.64044 * 201.56754 * 15 14 13 33 33 H 1.08998 * 109.47006 * 170.84393 * 17 16 15 34 34 H 1.08997 * 109.46752 * 290.84739 * 17 16 15 35 35 H 1.08003 * 125.89566 * 359.97438 * 19 18 17 36 36 H 1.08005 * 126.12977 * 180.23598 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.5559 -2.4897 0.8401 11 6 0.4790 -2.5791 -1.2288 12 6 -0.4103 -3.8521 -1.2113 13 16 0.6169 -5.3107 -1.4003 14 6 1.1731 -5.7846 0.2711 15 6 1.5459 -4.5301 1.0950 16 7 2.2172 -3.5837 0.2157 17 6 3.4501 -3.0757 0.8322 18 6 4.2858 -4.2342 1.3121 19 6 5.2617 -4.9080 0.5705 20 7 5.7688 -5.8505 1.3230 21 7 5.1302 -5.8067 2.5691 22 1 5.3074 -6.3919 3.3221 23 6 4.2284 -4.8032 2.5386 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1542 -1.6962 -1.3169 26 1 1.1577 -2.6231 -2.0805 27 1 -0.9466 -3.9067 -0.2639 28 1 -1.1266 -3.8053 -2.0314 29 1 0.3717 -6.3224 0.7778 30 1 2.0452 -6.4333 0.1895 31 1 0.6415 -4.0758 1.5000 32 1 2.2141 -4.8115 1.9088 33 1 4.0136 -2.5009 0.0972 34 1 3.1967 -2.4357 1.6773 35 1 5.5473 -4.6881 -0.4476 36 1 3.5760 -4.5085 3.3473 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260235957.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:53 Heat of formation + Delta-G solvation = 107.142965 kcal Electronic energy + Delta-G solvation = -19040.755332 eV Core-core repulsion = 16267.910248 eV Total energy + Delta-G solvation = -2772.845084 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.98564 -38.01713 -33.62546 -31.96100 -31.23700 -30.60735 -29.39902 -26.35025 -25.00738 -23.02863 -21.70783 -21.37408 -19.78973 -19.44194 -17.48808 -16.31088 -15.69262 -15.12802 -14.55641 -14.29490 -14.22801 -13.84152 -13.66519 -13.47818 -12.82274 -12.70160 -12.52450 -11.88034 -11.74304 -11.40092 -11.10215 -10.91635 -10.76933 -10.49642 -10.43437 -10.08747 -9.85184 -9.75016 -9.34376 -8.95375 -8.80288 -8.43665 -8.11034 -7.36439 -6.61049 -6.08696 -4.17589 2.10418 2.55645 3.08959 3.11696 3.26367 3.31675 3.34493 3.54272 4.34745 5.05001 5.11291 5.18760 5.20212 5.52878 5.64052 5.76265 5.86042 5.90789 6.01315 6.05072 6.15297 6.20945 6.34447 6.47890 6.66542 6.75848 6.95541 6.99533 7.39192 7.43024 7.45755 7.71378 7.81728 7.90026 8.08852 8.27411 8.48140 8.90432 9.49500 10.94569 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.008466 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.566967 B = 3306.651521 C = 4652.633655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.532 4.532 8 H 0.074 0.926 9 C 0.193 3.807 10 H 0.010 0.990 11 C -0.086 4.086 12 C -0.084 4.084 13 S -0.265 6.265 14 C -0.060 4.060 15 C 0.026 3.974 16 N -0.491 5.491 17 C 0.139 3.861 18 C -0.215 4.215 19 C 0.070 3.930 20 N -0.308 5.308 21 N -0.486 5.486 22 H 0.433 0.567 23 C 0.046 3.954 24 H 0.262 0.738 25 H 0.104 0.896 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.182 0.818 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.691 -8.371 4.480 10.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.571 4.571 8 H 0.092 0.908 9 C 0.087 3.913 10 H 0.027 0.973 11 C -0.126 4.126 12 C -0.232 4.232 13 S -0.039 6.039 14 C -0.210 4.210 15 C -0.105 4.105 16 N -0.215 5.215 17 C 0.011 3.989 18 C -0.226 4.226 19 C -0.117 4.117 20 N -0.130 5.130 21 N -0.194 5.194 22 H 0.276 0.724 23 C -0.101 4.101 24 H 0.072 0.928 25 H 0.122 0.878 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.199 0.801 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.735 -9.892 3.127 11.404 hybrid contribution -0.745 2.332 2.352 3.394 sum 3.990 -7.561 5.479 10.154 Atomic orbital electron populations 1.69840 1.05944 1.26832 1.50440 1.24960 0.94840 0.99244 0.94938 0.86637 0.79596 0.82996 0.78720 1.20081 1.21388 1.20324 1.21781 0.93942 0.90287 1.51048 0.90844 1.18229 0.90332 0.88046 0.94731 0.97253 1.20845 0.97388 0.94788 0.99583 1.23727 0.99190 0.96928 1.03396 1.85427 1.66328 1.36598 1.15581 1.23819 1.01928 0.99925 0.95293 1.22878 0.98436 0.94106 0.95067 1.63469 1.04270 1.14407 1.39325 1.20540 0.89906 0.90599 0.97891 1.20581 1.03819 1.04583 0.93635 1.23825 0.95135 0.92990 0.99770 1.77261 1.20911 1.23496 0.91366 1.46226 1.31416 1.28405 1.13371 0.72414 1.22387 0.95627 0.92204 0.99870 0.92778 0.87816 0.92725 0.91638 0.89871 0.92004 0.89587 0.93412 0.91493 0.89542 0.93531 0.80108 0.81289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.93 11.39 55.43 0.63 -23.30 16 2 C 0.06 1.60 5.25 -17.82 -0.09 1.51 16 3 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.53 -13.32 7.21 -34.44 -0.25 -13.57 16 8 H 0.07 1.80 4.98 -52.48 -0.26 1.54 16 9 C 0.19 4.45 1.47 -72.48 -0.11 4.34 16 10 H 0.01 0.25 6.46 -51.93 -0.34 -0.08 16 11 C -0.09 -1.96 4.84 -29.10 -0.14 -2.10 16 12 C -0.08 -1.66 5.97 38.38 0.23 -1.43 16 13 S -0.27 -4.99 21.11 -107.50 -2.27 -7.26 16 14 C -0.06 -1.01 6.84 38.02 0.26 -0.75 16 15 C 0.03 0.46 5.06 -3.67 -0.02 0.45 16 16 N -0.49 -9.75 4.02 -233.93 -0.94 -10.69 16 17 C 0.14 2.58 4.23 -4.97 -0.02 2.56 16 18 C -0.21 -3.37 4.75 -105.05 -0.50 -3.87 16 19 C 0.07 1.07 11.96 -17.37 -0.21 0.87 16 20 N -0.31 -4.65 12.70 30.62 0.39 -4.26 16 21 N -0.49 -5.96 7.36 30.45 0.22 -5.73 16 22 H 0.43 3.75 8.96 -182.61 -1.64 2.11 16 23 C 0.05 0.61 9.88 -17.22 -0.17 0.44 16 24 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 25 H 0.10 2.63 5.87 -51.93 -0.30 2.32 16 26 H 0.05 1.30 8.12 -51.93 -0.42 0.88 16 27 H 0.06 1.29 7.97 -51.78 -0.41 0.88 16 28 H 0.08 1.53 8.14 -51.77 -0.42 1.10 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 31 H 0.05 0.92 6.41 -51.92 -0.33 0.58 16 32 H 0.07 1.05 4.24 -51.93 -0.22 0.83 16 33 H 0.09 1.70 6.51 -51.93 -0.34 1.36 16 34 H 0.05 0.92 7.40 -51.93 -0.38 0.54 16 35 H 0.18 2.53 8.06 -52.48 -0.42 2.11 16 36 H 0.17 1.81 7.75 -52.48 -0.41 1.40 16 LS Contribution 290.35 15.07 4.38 4.38 Total: -1.00 -27.99 290.35 -9.51 -37.49 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.88 Total: 5.69 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -1.02 Total: -11.57 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.30 Total: -43.98 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: -4.99 SS G_CDS: -2.27 Total: -7.26 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.99 -9.51 -37.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260235957.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.637 kcal (2) G-P(sol) polarization free energy of solvation -27.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds