Wall clock time and date at job start Mon Mar 30 2020 04:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00058 * 2 1 4 4 H 1.48498 * 109.46814 * 239.99615 * 3 2 1 5 5 H 1.48499 * 109.46855 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47376 * 119.99529 * 3 2 1 7 7 C 1.37870 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99942 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00290 * 0.02562 * 7 2 1 10 10 H 1.08999 * 108.13783 * 305.82653 * 9 7 2 11 11 C 1.45384 * 108.24747 * 62.89098 * 9 7 2 12 12 C 1.55297 * 109.85313 * 184.98472 * 11 9 7 13 13 S 1.79393 * 109.72244 * 288.76845 * 12 11 9 14 14 C 1.82413 * 106.81350 * 86.88764 * 13 12 11 15 15 C 1.54642 * 110.54339 * 319.25986 * 14 13 12 16 16 N 1.45585 * 108.46690 * 321.26310 * 15 14 13 17 17 C 1.46905 * 110.99945 * 227.96985 * 16 15 14 18 18 C 1.50699 * 109.46595 * 50.84434 * 17 16 15 19 19 C 1.39868 * 126.04234 * 90.02659 * 18 17 16 20 20 N 1.30837 * 108.20756 * 179.97438 * 19 18 17 21 21 N 1.40090 * 108.20249 * 0.02562 * 20 19 18 22 22 H 0.97000 * 126.03904 * 179.97438 * 21 20 19 23 23 C 1.34949 * 107.92452 * 359.75521 * 21 20 19 24 24 H 0.97006 * 119.99781 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.40801 * 305.10420 * 11 9 7 26 26 H 1.08996 * 109.40628 * 64.86910 * 11 9 7 27 27 H 1.09003 * 109.42610 * 48.84211 * 12 11 9 28 28 H 1.08994 * 109.42638 * 168.73865 * 12 11 9 29 29 H 1.09001 * 109.26381 * 79.53346 * 14 13 12 30 30 H 1.09000 * 109.26643 * 198.98577 * 14 13 12 31 31 H 1.09009 * 109.63591 * 80.95506 * 15 14 13 32 32 H 1.08993 * 109.64044 * 201.56754 * 15 14 13 33 33 H 1.08998 * 109.47006 * 170.84393 * 17 16 15 34 34 H 1.08997 * 109.46752 * 290.84739 * 17 16 15 35 35 H 1.08003 * 125.89566 * 359.97438 * 19 18 17 36 36 H 1.08005 * 126.12977 * 180.23598 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.5559 -2.4897 0.8401 11 6 0.4790 -2.5791 -1.2288 12 6 -0.4103 -3.8521 -1.2113 13 16 0.6169 -5.3107 -1.4003 14 6 1.1731 -5.7846 0.2711 15 6 1.5459 -4.5301 1.0950 16 7 2.2172 -3.5837 0.2157 17 6 3.4501 -3.0757 0.8322 18 6 4.2858 -4.2342 1.3121 19 6 5.2617 -4.9080 0.5705 20 7 5.7688 -5.8505 1.3230 21 7 5.1302 -5.8067 2.5691 22 1 5.3074 -6.3919 3.3221 23 6 4.2284 -4.8032 2.5386 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1542 -1.6962 -1.3169 26 1 1.1577 -2.6231 -2.0805 27 1 -0.9466 -3.9067 -0.2639 28 1 -1.1266 -3.8053 -2.0314 29 1 0.3717 -6.3224 0.7778 30 1 2.0452 -6.4333 0.1895 31 1 0.6415 -4.0758 1.5000 32 1 2.2141 -4.8115 1.9088 33 1 4.0136 -2.5009 0.0972 34 1 3.1967 -2.4357 1.6773 35 1 5.5473 -4.6881 -0.4476 36 1 3.5760 -4.5085 3.3473 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260235957.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:53 Heat of formation + Delta-G solvation = 89.392778 kcal Electronic energy + Delta-G solvation = -19041.525038 eV Core-core repulsion = 16267.910248 eV Total energy + Delta-G solvation = -2773.614790 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.13521 -39.64358 -35.36266 -33.63557 -32.58830 -31.92840 -30.81714 -28.09064 -26.51009 -24.72595 -23.02592 -22.69849 -21.26964 -20.91852 -18.81045 -17.95135 -17.36707 -16.75554 -16.08557 -15.90267 -15.49866 -15.21575 -15.12004 -14.96629 -14.31058 -14.18750 -14.00764 -13.48269 -13.23536 -13.03958 -12.82479 -12.61767 -12.47673 -12.05913 -11.96895 -11.76836 -11.45327 -11.35959 -10.71762 -10.55292 -10.45068 -10.26854 -9.36448 -8.97220 -8.21690 -7.99124 -6.19980 1.00634 1.07548 1.44012 1.46106 1.51971 1.88710 2.03191 2.14564 2.44663 3.20660 3.58170 3.96765 4.11566 4.13709 4.23478 4.26594 4.36697 4.46225 4.62360 4.71022 4.80485 4.82045 4.90547 4.97634 5.05107 5.21476 5.34413 5.55559 5.62441 5.72217 5.79649 5.96148 6.30562 6.44437 6.51529 6.75712 6.81005 6.98812 7.50175 8.95861 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.008466 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.566967 B = 3306.651521 C = 4652.633655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.017 3.983 3 Si 0.948 3.052 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.272 1.272 7 C -0.541 4.541 8 H 0.076 0.924 9 C 0.204 3.796 10 H -0.020 1.020 11 C -0.079 4.079 12 C -0.075 4.075 13 S -0.273 6.273 14 C -0.052 4.052 15 C 0.028 3.972 16 N -0.494 5.494 17 C 0.149 3.851 18 C -0.240 4.240 19 C 0.061 3.939 20 N -0.324 5.324 21 N -0.467 5.467 22 H 0.451 0.549 23 C 0.068 3.932 24 H 0.260 0.740 25 H 0.075 0.925 26 H 0.038 0.962 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.032 0.968 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.030 0.970 35 H 0.186 0.814 36 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.577 -9.771 5.650 12.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.182 4.182 3 Si 0.774 3.226 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.197 1.197 7 C -0.580 4.580 8 H 0.093 0.907 9 C 0.097 3.903 10 H -0.003 1.003 11 C -0.119 4.119 12 C -0.224 4.224 13 S -0.047 6.047 14 C -0.201 4.201 15 C -0.102 4.102 16 N -0.217 5.217 17 C 0.021 3.979 18 C -0.252 4.252 19 C -0.125 4.125 20 N -0.148 5.148 21 N -0.177 5.177 22 H 0.298 0.702 23 C -0.081 4.081 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.050 0.950 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.203 0.797 36 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 5.650 -11.329 4.311 13.373 hybrid contribution -0.974 2.702 2.047 3.527 sum 4.676 -8.626 6.358 11.692 Atomic orbital electron populations 1.69971 1.07072 1.27177 1.51549 1.25628 0.95498 1.02070 0.95018 0.85761 0.78429 0.79623 0.78756 1.19946 1.21527 1.19674 1.22153 0.94301 0.91395 1.50107 0.90661 1.18034 0.90197 0.88616 0.93493 1.00273 1.20625 0.97140 0.95434 0.98749 1.23536 0.98966 0.96017 1.03869 1.85444 1.66347 1.35227 1.17664 1.23863 1.03008 0.99469 0.93750 1.22856 0.98054 0.93740 0.95589 1.63449 1.04140 1.13456 1.40657 1.20263 0.89446 0.91615 0.96565 1.20291 1.04778 1.04951 0.95183 1.23935 0.95160 0.93104 1.00265 1.77238 1.21562 1.23613 0.92342 1.46234 1.30270 1.28015 1.13166 0.70215 1.22686 0.94982 0.91065 0.99403 0.93070 0.90653 0.94339 0.91818 0.88642 0.89612 0.88733 0.94986 0.89049 0.91435 0.95163 0.79728 0.78448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.51 11.39 21.44 0.24 -50.27 16 2 C 0.02 0.89 5.25 84.65 0.44 1.33 16 3 Si 0.95 42.05 29.54 68.60 2.03 44.07 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.54 -27.64 7.21 25.60 0.18 -27.45 16 8 H 0.08 3.75 4.98 -2.90 -0.01 3.73 16 9 C 0.20 9.58 1.47 41.86 0.06 9.64 16 10 H -0.02 -1.06 6.46 -2.39 -0.02 -1.08 16 11 C -0.08 -3.70 4.84 29.06 0.14 -3.56 16 12 C -0.08 -2.97 5.97 72.77 0.43 -2.53 16 13 S -0.27 -9.90 21.11 -56.49 -1.19 -11.09 16 14 C -0.05 -1.61 6.84 72.54 0.50 -1.12 16 15 C 0.03 0.96 5.06 87.11 0.44 1.40 16 16 N -0.49 -19.44 4.02 -894.02 -3.60 -23.04 16 17 C 0.15 5.49 4.23 85.56 0.36 5.85 16 18 C -0.24 -7.11 4.75 -20.14 -0.10 -7.20 16 19 C 0.06 1.80 11.96 85.24 1.02 2.82 16 20 N -0.32 -8.99 12.70 -57.02 -0.72 -9.72 16 21 N -0.47 -9.82 7.36 -57.58 -0.42 -10.25 16 22 H 0.45 6.03 8.96 -213.33 -1.91 4.12 16 23 C 0.07 1.55 9.88 83.54 0.83 2.37 16 24 H 0.26 13.82 8.31 -92.70 -0.77 13.05 16 25 H 0.08 3.97 5.87 -2.39 -0.01 3.95 16 26 H 0.04 1.88 8.12 -2.39 -0.02 1.86 16 27 H 0.06 2.51 7.97 -2.48 -0.02 2.49 16 28 H 0.10 3.47 8.14 -2.49 -0.02 3.45 16 29 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 31 H 0.03 1.20 6.41 -2.38 -0.02 1.19 16 32 H 0.09 2.61 4.24 -2.39 -0.01 2.60 16 33 H 0.07 2.70 6.51 -2.39 -0.02 2.68 16 34 H 0.03 1.19 7.40 -2.39 -0.02 1.18 16 35 H 0.19 5.03 8.06 -2.91 -0.02 5.01 16 36 H 0.20 3.38 7.75 -2.91 -0.02 3.35 16 Total: -1.00 -60.30 290.35 -0.16 -60.47 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -0.81 Total: 18.27 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 4.31 Total: -18.46 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -4.50 Total: -93.27 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Atomic # 16 Polarization: -9.90 SS G_CDS: -1.19 Total: -11.09 kcal Total: -60.30 -0.16 -60.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260235957.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.861 kcal (2) G-P(sol) polarization free energy of solvation -60.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds