Wall clock time and date at job start Mon Mar 30 2020 04:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00338 * 2 1 4 4 H 1.48496 * 109.47264 * 89.99517 * 3 2 1 5 5 H 1.48497 * 109.47057 * 209.99450 * 3 2 1 6 6 H 1.48498 * 109.47146 * 329.99648 * 3 2 1 7 7 C 1.37879 * 119.99560 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99984 * 199.66611 * 7 2 1 9 9 C 1.50700 * 119.99923 * 19.66683 * 7 2 1 10 10 H 1.09000 * 109.47458 * 305.55202 * 9 7 2 11 11 N 1.46907 * 109.47230 * 185.55615 * 9 7 2 12 12 C 1.46839 * 111.00277 * 171.26370 * 11 9 7 13 13 C 1.53039 * 109.52449 * 174.16168 * 12 11 9 14 14 C 1.53120 * 109.27872 * 59.17787 * 13 12 11 15 15 C 1.53118 * 109.16073 * 302.34910 * 14 13 12 16 16 H 1.09004 * 109.50003 * 297.70931 * 15 14 13 17 17 C 1.52997 * 109.50235 * 177.63438 * 15 14 13 18 18 O 1.42902 * 109.47173 * 64.99600 * 17 15 14 19 19 C 1.46849 * 110.99622 * 47.05032 * 11 9 7 20 20 C 1.52996 * 109.47320 * 65.55766 * 9 7 2 21 21 F 1.39901 * 109.47399 * 66.05439 * 20 9 7 22 22 F 1.39901 * 109.47547 * 186.05744 * 20 9 7 23 23 F 1.39908 * 109.47006 * 306.05351 * 20 9 7 24 24 H 0.96997 * 120.00356 * 175.77798 * 1 2 3 25 25 H 1.09006 * 109.46287 * 294.17801 * 12 11 9 26 26 H 1.09004 * 109.46435 * 54.14362 * 12 11 9 27 27 H 1.09003 * 109.50373 * 179.12334 * 13 12 11 28 28 H 1.09002 * 109.50010 * 299.19684 * 13 12 11 29 29 H 1.08997 * 109.52043 * 62.25406 * 14 13 12 30 30 H 1.08994 * 109.52154 * 182.37461 * 14 13 12 31 31 H 1.09001 * 109.47054 * 184.99797 * 17 15 14 32 32 H 1.09004 * 109.47413 * 304.99998 * 17 15 14 33 33 H 0.96697 * 114.00060 * 179.97438 * 18 17 15 34 34 H 1.08999 * 109.46888 * 305.86265 * 19 11 9 35 35 H 1.09000 * 109.46352 * 65.83042 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5468 1.4400 -0.6999 6 1 1.4468 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0372 -1.2213 0.3153 9 6 1.3168 -2.4613 -0.4381 10 1 0.4049 -2.5997 0.1428 11 7 2.2132 -3.6049 -0.2221 12 6 1.5089 -4.8745 -0.4417 13 6 2.5039 -6.0338 -0.3514 14 6 3.1639 -6.0270 1.0302 15 6 3.8492 -4.6761 1.2533 16 1 4.6344 -4.5392 0.5098 17 6 4.4610 -4.6390 2.6551 18 8 5.5044 -5.6113 2.7453 19 6 2.8151 -3.5562 1.1165 20 6 0.9650 -2.3626 -1.9238 21 9 2.1414 -2.3239 -2.6801 22 9 0.2063 -3.4767 -2.2985 23 9 0.2256 -1.1970 -2.1516 24 1 -0.4850 -0.8377 -0.0618 25 1 0.7374 -4.9981 0.3184 26 1 1.0476 -4.8679 -1.4294 27 1 1.9781 -6.9771 -0.4990 28 1 3.2675 -5.9186 -1.1207 29 1 2.4049 -6.1815 1.7971 30 1 3.9040 -6.8254 1.0842 31 1 4.8710 -3.6473 2.8465 32 1 3.6912 -4.8627 3.3937 33 1 5.9385 -5.6434 3.6088 34 1 3.3026 -2.5920 1.2607 35 1 2.0376 -3.6860 1.8693 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261125573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:13 Heat of formation + Delta-G solvation = -204.842105 kcal Electronic energy + Delta-G solvation = -22372.634898 eV Core-core repulsion = 18569.358764 eV Total energy + Delta-G solvation = -3803.276135 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.84638 -46.45087 -46.15875 -38.86056 -36.60344 -34.27791 -32.21081 -31.09446 -27.93127 -25.66631 -24.42788 -23.23249 -21.60767 -20.77693 -19.34470 -17.56148 -17.39564 -17.17435 -16.89399 -15.93994 -15.24986 -14.89616 -14.26109 -14.15837 -13.83256 -13.44624 -13.30395 -13.25743 -12.77905 -12.71412 -12.58705 -12.55938 -12.38484 -12.38229 -11.69830 -11.48565 -11.09134 -10.87861 -10.76027 -10.61288 -10.38132 -10.18289 -10.08700 -9.78047 -9.69391 -9.10097 -8.39229 -7.59158 -6.67051 -4.40808 3.31902 3.41688 3.56769 3.97102 4.25622 4.33307 4.69348 4.97095 5.00582 5.17070 5.27209 5.40352 5.49222 5.57987 5.65889 5.74373 5.76708 5.82967 5.92345 6.07651 6.11201 6.19385 6.30529 6.43396 6.50689 6.60312 6.72333 6.77508 7.34441 7.61064 7.67856 7.98346 8.29436 8.53040 9.29227 10.68140 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.019198 B = 0.008256 C = 0.006310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.133807 B = 3390.766002 C = 4436.193277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.036 3.964 3 Si 1.070 2.930 4 H -0.286 1.286 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.617 4.617 8 H 0.076 0.924 9 C 0.176 3.824 10 H 0.030 0.970 11 N -0.521 5.521 12 C 0.026 3.974 13 C -0.113 4.113 14 C -0.108 4.108 15 C -0.087 4.087 16 H 0.083 0.917 17 C 0.082 3.918 18 O -0.574 6.574 19 C 0.078 3.922 20 C 0.435 3.565 21 F -0.186 7.186 22 F -0.216 7.216 23 F -0.175 7.175 24 H 0.273 0.727 25 H 0.025 0.975 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.042 0.958 33 H 0.374 0.626 34 H 0.098 0.902 35 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.042 -8.243 3.464 10.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.174 4.174 3 Si 0.897 3.103 4 H -0.212 1.212 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.653 4.653 8 H 0.094 0.906 9 C 0.066 3.934 10 H 0.047 0.953 11 N -0.246 5.246 12 C -0.102 4.102 13 C -0.151 4.151 14 C -0.146 4.146 15 C -0.106 4.106 16 H 0.101 0.899 17 C 0.004 3.996 18 O -0.378 6.378 19 C -0.049 4.049 20 C 0.380 3.620 21 F -0.167 7.167 22 F -0.198 7.198 23 F -0.156 7.156 24 H 0.084 0.916 25 H 0.043 0.957 26 H 0.108 0.892 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.220 0.780 34 H 0.116 0.884 35 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 4.993 -6.677 2.513 8.708 hybrid contribution -0.538 -1.629 0.760 1.877 sum 4.455 -8.306 3.274 9.978 Atomic orbital electron populations 1.70754 1.07190 1.31737 1.39990 1.25984 0.96036 1.03069 0.92355 0.83532 0.75269 0.74527 0.76978 1.21211 1.20750 1.20595 1.21673 1.00837 0.90894 1.51864 0.90641 1.20271 0.94405 0.92696 0.85985 0.95267 1.61498 1.33671 1.00803 1.28584 1.22624 0.95144 0.90072 1.02328 1.21553 0.98823 0.97108 0.97568 1.21542 0.99038 0.97110 0.96910 1.21222 0.98188 0.95597 0.95550 0.89855 1.22187 0.88966 0.90955 0.97466 1.86477 1.52452 1.60640 1.38269 1.21910 0.95583 0.98928 0.88522 1.22498 0.73285 0.72042 0.94171 1.93046 1.48567 1.96080 1.79028 1.92913 1.78143 1.54896 1.93860 1.93175 1.77478 1.49299 1.95694 0.91579 0.95701 0.89193 0.92185 0.91331 0.92935 0.91780 0.93355 0.93960 0.78019 0.88422 0.95710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.43 12.35 55.43 0.68 -23.75 16 2 C 0.04 0.97 4.43 -17.82 -0.08 0.89 16 3 Si 1.07 24.01 29.95 -169.99 -5.09 18.92 16 4 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.62 -16.01 7.47 -34.44 -0.26 -16.27 16 8 H 0.08 1.95 6.09 -52.49 -0.32 1.63 16 9 C 0.18 4.26 1.44 -68.86 -0.10 4.16 16 10 H 0.03 0.77 7.14 -51.93 -0.37 0.39 16 11 N -0.52 -11.00 4.34 -228.08 -0.99 -11.99 16 12 C 0.03 0.49 5.15 -3.84 -0.02 0.47 16 13 C -0.11 -1.75 6.09 -26.65 -0.16 -1.92 16 14 C -0.11 -1.61 5.15 -26.61 -0.14 -1.75 16 15 C -0.09 -1.38 2.59 -90.54 -0.23 -1.61 16 16 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 17 C 0.08 1.09 6.43 37.16 0.24 1.33 16 18 O -0.57 -7.18 13.25 -35.23 -0.47 -7.65 16 19 C 0.08 1.48 4.38 -3.83 -0.02 1.46 16 20 C 0.44 10.64 2.74 37.16 0.10 10.74 16 21 F -0.19 -4.59 16.98 2.25 0.04 -4.55 16 22 F -0.22 -4.83 14.27 2.25 0.03 -4.80 16 23 F -0.18 -4.62 13.74 2.25 0.03 -4.59 16 24 H 0.27 7.74 6.23 -40.82 -0.25 7.49 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.09 1.74 5.10 -51.93 -0.26 1.48 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.92 7.90 -51.93 -0.41 0.51 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.37 2.82 9.12 45.56 0.42 3.23 16 34 H 0.10 1.99 5.64 -51.93 -0.29 1.69 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 284.41 15.07 4.29 4.29 Total: -1.00 -28.93 284.41 -5.81 -34.75 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -3.67 Total: 1.86 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -0.67 Total: -2.49 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.30 Total: -35.74 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -0.47 Total: -7.65 kcal Atomic # 9 Polarization: -14.04 SS G_CDS: 0.10 Total: -13.94 kcal Atomic # 14 Polarization: 24.01 SS G_CDS: -5.09 Total: 18.92 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.93 -5.81 -34.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261125573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.093 kcal (2) G-P(sol) polarization free energy of solvation -28.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds