Wall clock time and date at job start Mon Mar 30 2020 04:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00338 * 2 1 4 4 H 1.48496 * 109.47264 * 89.99517 * 3 2 1 5 5 H 1.48497 * 109.47057 * 209.99450 * 3 2 1 6 6 H 1.48498 * 109.47146 * 329.99648 * 3 2 1 7 7 C 1.37879 * 119.99560 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99984 * 199.66611 * 7 2 1 9 9 C 1.50700 * 119.99923 * 19.66683 * 7 2 1 10 10 H 1.09000 * 109.47458 * 305.55202 * 9 7 2 11 11 N 1.46907 * 109.47230 * 185.55615 * 9 7 2 12 12 C 1.46839 * 111.00277 * 171.26370 * 11 9 7 13 13 C 1.53039 * 109.52449 * 174.16168 * 12 11 9 14 14 C 1.53120 * 109.27872 * 59.17787 * 13 12 11 15 15 C 1.53118 * 109.16073 * 302.34910 * 14 13 12 16 16 H 1.09004 * 109.50003 * 297.70931 * 15 14 13 17 17 C 1.52997 * 109.50235 * 177.63438 * 15 14 13 18 18 O 1.42902 * 109.47173 * 64.99600 * 17 15 14 19 19 C 1.46849 * 110.99622 * 47.05032 * 11 9 7 20 20 C 1.52996 * 109.47320 * 65.55766 * 9 7 2 21 21 F 1.39901 * 109.47399 * 66.05439 * 20 9 7 22 22 F 1.39901 * 109.47547 * 186.05744 * 20 9 7 23 23 F 1.39908 * 109.47006 * 306.05351 * 20 9 7 24 24 H 0.96997 * 120.00356 * 175.77798 * 1 2 3 25 25 H 1.09006 * 109.46287 * 294.17801 * 12 11 9 26 26 H 1.09004 * 109.46435 * 54.14362 * 12 11 9 27 27 H 1.09003 * 109.50373 * 179.12334 * 13 12 11 28 28 H 1.09002 * 109.50010 * 299.19684 * 13 12 11 29 29 H 1.08997 * 109.52043 * 62.25406 * 14 13 12 30 30 H 1.08994 * 109.52154 * 182.37461 * 14 13 12 31 31 H 1.09001 * 109.47054 * 184.99797 * 17 15 14 32 32 H 1.09004 * 109.47413 * 304.99998 * 17 15 14 33 33 H 0.96697 * 114.00060 * 179.97438 * 18 17 15 34 34 H 1.08999 * 109.46888 * 305.86265 * 19 11 9 35 35 H 1.09000 * 109.46352 * 65.83042 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5468 1.4400 -0.6999 6 1 1.4468 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0372 -1.2213 0.3153 9 6 1.3168 -2.4613 -0.4381 10 1 0.4049 -2.5997 0.1428 11 7 2.2132 -3.6049 -0.2221 12 6 1.5089 -4.8745 -0.4417 13 6 2.5039 -6.0338 -0.3514 14 6 3.1639 -6.0270 1.0302 15 6 3.8492 -4.6761 1.2533 16 1 4.6344 -4.5392 0.5098 17 6 4.4610 -4.6390 2.6551 18 8 5.5044 -5.6113 2.7453 19 6 2.8151 -3.5562 1.1165 20 6 0.9650 -2.3626 -1.9238 21 9 2.1414 -2.3239 -2.6801 22 9 0.2063 -3.4767 -2.2985 23 9 0.2256 -1.1970 -2.1516 24 1 -0.4850 -0.8377 -0.0618 25 1 0.7374 -4.9981 0.3184 26 1 1.0476 -4.8679 -1.4294 27 1 1.9781 -6.9771 -0.4990 28 1 3.2675 -5.9186 -1.1207 29 1 2.4049 -6.1815 1.7971 30 1 3.9040 -6.8254 1.0842 31 1 4.8710 -3.6473 2.8465 32 1 3.6912 -4.8627 3.3937 33 1 5.9385 -5.6434 3.6088 34 1 3.3026 -2.5920 1.2607 35 1 2.0376 -3.6860 1.8693 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261125573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:13 Heat of formation + Delta-G solvation = -225.194600 kcal Electronic energy + Delta-G solvation = -22373.517449 eV Core-core repulsion = 18569.358764 eV Total energy + Delta-G solvation = -3804.158685 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.82751 -48.41205 -48.19171 -40.29629 -37.75921 -35.96725 -33.90650 -32.45588 -29.73391 -27.11065 -26.18693 -24.86083 -23.17471 -22.39443 -20.68581 -19.47088 -19.32141 -18.97457 -18.17460 -17.76203 -16.91451 -16.09675 -15.87323 -15.66799 -15.49822 -15.22399 -15.09843 -14.80349 -14.72809 -14.51947 -14.40310 -14.23560 -14.07558 -13.77010 -13.35701 -13.07223 -12.71271 -12.62261 -12.49931 -11.99442 -11.93299 -11.65317 -11.46759 -11.15777 -10.99217 -10.77654 -10.38377 -9.29274 -8.77369 -6.51330 1.52560 1.62370 1.81331 2.10543 2.47479 2.71074 2.97046 3.43077 3.50676 3.62197 3.73494 3.86603 3.94540 4.01740 4.29145 4.40491 4.52209 4.53126 4.55449 4.58824 4.76226 4.82300 4.91632 5.01022 5.09358 5.16728 5.35312 5.45309 5.48457 5.83988 6.18981 6.35093 6.44486 6.94883 7.25427 8.57283 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.019198 B = 0.008256 C = 0.006310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.133807 B = 3390.766002 C = 4436.193277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C -0.005 4.005 3 Si 1.109 2.891 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.285 1.285 7 C -0.621 4.621 8 H 0.075 0.925 9 C 0.178 3.822 10 H 0.009 0.991 11 N -0.530 5.530 12 C 0.024 3.976 13 C -0.106 4.106 14 C -0.102 4.102 15 C -0.082 4.082 16 H 0.068 0.932 17 C 0.090 3.910 18 O -0.585 6.585 19 C 0.082 3.918 20 C 0.436 3.564 21 F -0.187 7.187 22 F -0.204 7.204 23 F -0.188 7.188 24 H 0.260 0.740 25 H 0.025 0.975 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.397 0.603 34 H 0.079 0.921 35 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.299 -9.205 4.222 11.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.211 4.211 3 Si 0.930 3.070 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.210 1.210 7 C -0.657 4.657 8 H 0.093 0.907 9 C 0.068 3.932 10 H 0.026 0.974 11 N -0.254 5.254 12 C -0.103 4.103 13 C -0.144 4.144 14 C -0.140 4.140 15 C -0.101 4.101 16 H 0.086 0.914 17 C 0.011 3.989 18 O -0.394 6.394 19 C -0.046 4.046 20 C 0.381 3.619 21 F -0.169 7.169 22 F -0.186 7.186 23 F -0.170 7.170 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.247 0.753 34 H 0.097 0.903 35 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 6.270 -7.671 3.298 10.442 hybrid contribution -0.918 -1.419 0.515 1.767 sum 5.352 -9.090 3.812 11.216 Atomic orbital electron populations 1.70864 1.08042 1.30973 1.42359 1.27216 0.96076 1.06233 0.91533 0.83046 0.74502 0.71278 0.78177 1.18996 1.19637 1.21041 1.21885 1.00771 0.91653 1.51354 0.90719 1.20091 0.93987 0.93725 0.85380 0.97404 1.61557 1.33101 1.00807 1.29940 1.22691 0.96007 0.89999 1.01651 1.21542 0.98099 0.96765 0.98002 1.21507 0.99338 0.96615 0.96516 1.21128 0.96920 0.94970 0.97096 0.91401 1.22003 0.89599 0.91501 0.95770 1.86408 1.52326 1.60173 1.40447 1.21873 0.95948 0.99458 0.87290 1.22395 0.73235 0.71970 0.94291 1.93036 1.48663 1.96103 1.79049 1.92936 1.77810 1.54035 1.93774 1.93149 1.77816 1.50227 1.95781 0.92923 0.95712 0.90226 0.89486 0.91894 0.92172 0.90469 0.93041 0.92694 0.75344 0.90293 0.96087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.98 12.35 21.45 0.26 -50.71 16 2 C -0.01 -0.28 4.43 84.65 0.38 0.09 16 3 Si 1.11 47.85 29.95 68.60 2.05 49.90 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.62 -32.44 7.47 25.60 0.19 -32.25 16 8 H 0.07 3.86 6.09 -2.91 -0.02 3.84 16 9 C 0.18 8.74 1.44 44.17 0.06 8.81 16 10 H 0.01 0.46 7.14 -2.39 -0.02 0.44 16 11 N -0.53 -22.24 4.34 -875.50 -3.80 -26.03 16 12 C 0.02 0.87 5.15 86.33 0.44 1.32 16 13 C -0.11 -3.07 6.09 30.65 0.19 -2.88 16 14 C -0.10 -2.77 5.15 30.67 0.16 -2.61 16 15 C -0.08 -2.48 2.59 -10.74 -0.03 -2.51 16 16 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 17 C 0.09 2.16 6.43 71.98 0.46 2.62 16 18 O -0.59 -12.90 13.25 -148.98 -1.97 -14.87 16 19 C 0.08 3.05 4.38 86.33 0.38 3.43 16 20 C 0.44 21.48 2.74 71.98 0.20 21.68 16 21 F -0.19 -9.21 16.98 44.97 0.76 -8.45 16 22 F -0.20 -9.10 14.27 44.97 0.64 -8.46 16 23 F -0.19 -10.09 13.74 44.97 0.62 -9.47 16 24 H 0.26 15.20 6.23 -92.71 -0.58 14.62 16 25 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.08 3.03 5.10 -2.38 -0.01 3.02 16 27 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.08 1.94 7.90 -2.39 -0.02 1.92 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.40 4.70 9.12 -74.06 -0.68 4.02 16 34 H 0.08 3.22 5.64 -2.39 -0.01 3.20 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -61.21 284.41 1.64 -59.58 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.63 Total: 10.83 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 2.43 Total: -2.30 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -3.53 Total: -76.75 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -1.97 Total: -14.87 kcal Atomic # 9 Polarization: -28.41 SS G_CDS: 2.02 Total: -26.38 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.05 Total: 49.90 kcal Total: -61.21 1.64 -59.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261125573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.619 kcal (2) G-P(sol) polarization free energy of solvation -61.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds