Wall clock time and date at job start Mon Mar 30 2020 04:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00094 * 2 1 4 4 H 1.48496 * 109.46762 * 239.72400 * 3 2 1 5 5 H 1.48503 * 109.46876 * 359.72240 * 3 2 1 6 6 H 1.48497 * 109.47339 * 119.72001 * 3 2 1 7 7 C 1.37878 * 120.00086 * 179.72192 * 2 1 3 8 8 H 1.07998 * 120.00114 * 165.37622 * 7 2 1 9 9 C 1.50699 * 119.99973 * 345.37374 * 7 2 1 10 10 H 1.09005 * 109.47081 * 54.37311 * 9 7 2 11 11 N 1.46898 * 109.47297 * 174.36941 * 9 7 2 12 12 C 1.46847 * 110.99759 * 70.93731 * 11 9 7 13 13 C 1.53036 * 109.52250 * 185.83883 * 12 11 9 14 14 C 1.53112 * 109.28094 * 300.82040 * 13 12 11 15 15 C 1.53125 * 109.15979 * 57.65413 * 14 13 12 16 16 C 1.46842 * 111.00015 * 195.14419 * 11 9 7 17 17 H 1.08992 * 109.46640 * 294.17739 * 16 11 9 18 18 C 1.53002 * 109.46032 * 54.15132 * 16 11 9 19 19 O 1.42898 * 109.47466 * 62.92611 * 18 16 11 20 20 C 1.52995 * 109.47262 * 294.37343 * 9 7 2 21 21 F 1.39902 * 109.47168 * 66.05585 * 20 9 7 22 22 F 1.39904 * 109.47325 * 186.05398 * 20 9 7 23 23 F 1.39902 * 109.47476 * 306.05479 * 20 9 7 24 24 H 0.96997 * 119.99802 * 180.97645 * 1 2 3 25 25 H 1.08997 * 109.46470 * 305.85480 * 12 11 9 26 26 H 1.09001 * 109.46312 * 65.82265 * 12 11 9 27 27 H 1.09007 * 109.50131 * 60.76500 * 13 12 11 28 28 H 1.09008 * 109.50346 * 180.87654 * 13 12 11 29 29 H 1.08999 * 109.52660 * 177.55832 * 14 13 12 30 30 H 1.09001 * 109.52330 * 297.75263 * 14 13 12 31 31 H 1.08997 * 109.50344 * 62.28779 * 15 14 13 32 32 H 1.08998 * 109.50467 * 182.36678 * 15 14 13 33 33 H 1.09002 * 109.46720 * 182.92538 * 18 16 11 34 34 H 1.08997 * 109.46680 * 302.92205 * 18 16 11 35 35 H 0.96700 * 114.00119 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1079 1.6934 -1.2091 5 1 1.2842 2.7465 -0.0068 6 1 3.0978 1.6994 1.2159 7 6 2.0046 -1.1940 0.0058 8 1 3.0583 -1.2103 -0.2303 9 6 1.2877 -2.4764 0.3416 10 1 0.4221 -2.5904 -0.3111 11 7 2.1993 -3.6120 0.1487 12 6 3.2404 -3.6329 1.1842 13 6 4.2523 -4.7371 0.8699 14 6 3.5294 -6.0858 0.8193 15 6 2.4188 -6.0217 -0.2329 16 6 1.4600 -4.8802 0.1135 17 1 1.0113 -5.0663 1.0891 18 6 0.3596 -4.7995 -0.9466 19 8 0.9515 -4.6231 -2.2352 20 6 0.8252 -2.4355 1.7994 21 9 -0.1472 -1.4414 1.9525 22 9 0.2832 -3.6762 2.1517 23 9 1.9167 -2.1515 2.6272 24 1 -0.4850 -0.8399 0.0143 25 1 3.7495 -2.6694 1.2068 26 1 2.7832 -3.8247 2.1549 27 1 4.7199 -4.5384 -0.0946 28 1 5.0163 -4.7625 1.6470 29 1 4.2386 -6.8695 0.5530 30 1 3.0946 -6.3029 1.7950 31 1 2.8575 -5.8433 -1.2146 32 1 1.8732 -6.9652 -0.2442 33 1 -0.2222 -5.7212 -0.9371 34 1 -0.2939 -3.9550 -0.7282 35 1 0.3112 -4.5633 -2.9573 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261154366.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:20 Heat of formation + Delta-G solvation = -190.284051 kcal Electronic energy + Delta-G solvation = -23269.537084 eV Core-core repulsion = 19466.892234 eV Total energy + Delta-G solvation = -3802.644850 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.03715 -46.55836 -46.34860 -38.89347 -35.87148 -34.31800 -32.13119 -30.97067 -27.82553 -25.74846 -24.39767 -23.38169 -21.50100 -20.72766 -19.41319 -17.65648 -17.32133 -17.00708 -16.89542 -15.92513 -15.44227 -14.56318 -14.06946 -13.91334 -13.77919 -13.47627 -13.31302 -13.19229 -12.91557 -12.70931 -12.65236 -12.46056 -12.35416 -12.18407 -11.66605 -11.15494 -11.05274 -11.03104 -10.68841 -10.48748 -10.36793 -10.13022 -9.92738 -9.80407 -9.32458 -9.12446 -8.36027 -7.44421 -6.56427 -4.29102 3.39825 3.43177 3.61274 4.04922 4.35717 4.50349 4.73498 4.97308 5.14290 5.19329 5.30611 5.36389 5.51456 5.59499 5.65448 5.69080 5.73586 5.89876 6.00696 6.08038 6.19876 6.23629 6.30185 6.37530 6.55540 6.63190 6.79487 6.82446 7.52505 7.78586 7.98445 8.10503 8.41883 8.64012 9.38324 10.78733 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.021272 B = 0.008976 C = 0.008853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.965095 B = 3118.515293 C = 3161.990498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.028 3.972 3 Si 1.071 2.929 4 H -0.284 1.284 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.591 4.591 8 H 0.072 0.928 9 C 0.173 3.827 10 H 0.076 0.924 11 N -0.492 5.492 12 C 0.047 3.953 13 C -0.117 4.117 14 C -0.120 4.120 15 C -0.103 4.103 16 C 0.061 3.939 17 H 0.066 0.934 18 C 0.082 3.918 19 O -0.550 6.550 20 C 0.390 3.610 21 F -0.179 7.179 22 F -0.221 7.221 23 F -0.191 7.191 24 H 0.274 0.726 25 H 0.089 0.911 26 H 0.034 0.966 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.048 0.952 35 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.215 -9.439 0.481 9.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.181 4.181 3 Si 0.897 3.103 4 H -0.210 1.210 5 H -0.207 1.207 6 H -0.211 1.211 7 C -0.627 4.627 8 H 0.090 0.910 9 C 0.062 3.938 10 H 0.093 0.907 11 N -0.215 5.215 12 C -0.081 4.081 13 C -0.154 4.154 14 C -0.158 4.158 15 C -0.141 4.141 16 C -0.048 4.048 17 H 0.083 0.917 18 C 0.004 3.996 19 O -0.353 6.353 20 C 0.333 3.667 21 F -0.160 7.160 22 F -0.203 7.203 23 F -0.172 7.172 24 H 0.086 0.914 25 H 0.107 0.893 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 2.781 -7.774 0.394 8.266 hybrid contribution -0.978 -1.789 0.954 2.251 sum 1.803 -9.563 1.348 9.824 Atomic orbital electron populations 1.70777 1.07037 1.31614 1.41312 1.25980 0.96204 1.03035 0.92896 0.83514 0.75051 0.74770 0.76919 1.21025 1.20651 1.21065 1.21576 0.98495 0.89737 1.52915 0.90992 1.20878 0.95581 0.93123 0.84189 0.90668 1.62046 1.12415 1.00537 1.46453 1.22435 0.93452 0.99838 0.92326 1.21622 0.97640 0.94372 1.01806 1.21587 0.97821 0.97490 0.98870 1.21473 0.96294 0.96184 1.00119 1.22103 0.93989 0.91655 0.97022 0.91674 1.22276 0.94568 0.98542 0.84183 1.86630 1.36578 1.96388 1.15674 1.24606 0.74683 0.71560 0.95815 1.93149 1.64285 1.62011 1.96571 1.92943 1.87423 1.45454 1.94431 1.93009 1.54946 1.93385 1.75884 0.91433 0.89254 0.94842 0.91283 0.92297 0.92411 0.92833 0.90346 0.92644 0.94262 0.93363 0.78808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.06 12.29 55.43 0.68 -24.38 16 2 C 0.03 0.77 4.92 -17.82 -0.09 0.68 16 3 Si 1.07 24.56 29.93 -169.99 -5.09 19.48 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.59 -15.86 7.53 -34.44 -0.26 -16.12 16 8 H 0.07 1.97 7.32 -52.49 -0.38 1.58 16 9 C 0.17 4.19 1.61 -68.87 -0.11 4.08 16 10 H 0.08 1.91 4.51 -51.93 -0.23 1.68 16 11 N -0.49 -10.52 4.31 -220.15 -0.95 -11.47 16 12 C 0.05 0.94 3.88 -3.83 -0.01 0.93 16 13 C -0.12 -1.89 6.09 -26.65 -0.16 -2.05 16 14 C -0.12 -1.76 6.00 -26.61 -0.16 -1.92 16 15 C -0.10 -1.63 5.21 -26.65 -0.14 -1.76 16 16 C 0.06 1.12 1.78 -67.72 -0.12 1.00 16 17 H 0.07 1.24 5.49 -51.93 -0.28 0.96 16 18 C 0.08 1.41 6.28 37.16 0.23 1.65 16 19 O -0.55 -9.47 12.77 -35.23 -0.45 -9.92 16 20 C 0.39 9.43 2.35 37.15 0.09 9.51 16 21 F -0.18 -4.70 13.75 2.25 0.03 -4.67 16 22 F -0.22 -4.83 13.88 2.25 0.03 -4.80 16 23 F -0.19 -4.61 13.50 2.25 0.03 -4.58 16 24 H 0.27 7.81 5.66 -40.82 -0.23 7.58 16 25 H 0.09 1.94 6.72 -51.93 -0.35 1.59 16 26 H 0.03 0.69 5.74 -51.93 -0.30 0.39 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.34 7.59 -51.93 -0.39 0.95 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.91 5.85 -51.93 -0.30 0.60 16 35 H 0.37 4.59 9.12 45.56 0.42 5.00 16 LS Contribution 274.24 15.07 4.13 4.13 Total: -1.00 -29.71 274.24 -5.71 -35.42 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -3.40 Total: 4.79 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -0.73 Total: -4.00 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.27 Total: -35.85 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.45 Total: -9.92 kcal Atomic # 9 Polarization: -14.14 SS G_CDS: 0.09 Total: -14.05 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.09 Total: 19.48 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.71 -5.71 -35.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261154366.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.861 kcal (2) G-P(sol) polarization free energy of solvation -29.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds