Wall clock time and date at job start Mon Mar 30 2020 04:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00094 * 2 1 4 4 H 1.48496 * 109.46762 * 239.72400 * 3 2 1 5 5 H 1.48503 * 109.46876 * 359.72240 * 3 2 1 6 6 H 1.48497 * 109.47339 * 119.72001 * 3 2 1 7 7 C 1.37878 * 120.00086 * 179.72192 * 2 1 3 8 8 H 1.07998 * 120.00114 * 165.37622 * 7 2 1 9 9 C 1.50699 * 119.99973 * 345.37374 * 7 2 1 10 10 H 1.09005 * 109.47081 * 54.37311 * 9 7 2 11 11 N 1.46898 * 109.47297 * 174.36941 * 9 7 2 12 12 C 1.46847 * 110.99759 * 70.93731 * 11 9 7 13 13 C 1.53036 * 109.52250 * 185.83883 * 12 11 9 14 14 C 1.53112 * 109.28094 * 300.82040 * 13 12 11 15 15 C 1.53125 * 109.15979 * 57.65413 * 14 13 12 16 16 C 1.46842 * 111.00015 * 195.14419 * 11 9 7 17 17 H 1.08992 * 109.46640 * 294.17739 * 16 11 9 18 18 C 1.53002 * 109.46032 * 54.15132 * 16 11 9 19 19 O 1.42898 * 109.47466 * 62.92611 * 18 16 11 20 20 C 1.52995 * 109.47262 * 294.37343 * 9 7 2 21 21 F 1.39902 * 109.47168 * 66.05585 * 20 9 7 22 22 F 1.39904 * 109.47325 * 186.05398 * 20 9 7 23 23 F 1.39902 * 109.47476 * 306.05479 * 20 9 7 24 24 H 0.96997 * 119.99802 * 180.97645 * 1 2 3 25 25 H 1.08997 * 109.46470 * 305.85480 * 12 11 9 26 26 H 1.09001 * 109.46312 * 65.82265 * 12 11 9 27 27 H 1.09007 * 109.50131 * 60.76500 * 13 12 11 28 28 H 1.09008 * 109.50346 * 180.87654 * 13 12 11 29 29 H 1.08999 * 109.52660 * 177.55832 * 14 13 12 30 30 H 1.09001 * 109.52330 * 297.75263 * 14 13 12 31 31 H 1.08997 * 109.50344 * 62.28779 * 15 14 13 32 32 H 1.08998 * 109.50467 * 182.36678 * 15 14 13 33 33 H 1.09002 * 109.46720 * 182.92538 * 18 16 11 34 34 H 1.08997 * 109.46680 * 302.92205 * 18 16 11 35 35 H 0.96700 * 114.00119 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1079 1.6934 -1.2091 5 1 1.2842 2.7465 -0.0068 6 1 3.0978 1.6994 1.2159 7 6 2.0046 -1.1940 0.0058 8 1 3.0583 -1.2103 -0.2303 9 6 1.2877 -2.4764 0.3416 10 1 0.4221 -2.5904 -0.3111 11 7 2.1993 -3.6120 0.1487 12 6 3.2404 -3.6329 1.1842 13 6 4.2523 -4.7371 0.8699 14 6 3.5294 -6.0858 0.8193 15 6 2.4188 -6.0217 -0.2329 16 6 1.4600 -4.8802 0.1135 17 1 1.0113 -5.0663 1.0891 18 6 0.3596 -4.7995 -0.9466 19 8 0.9515 -4.6231 -2.2352 20 6 0.8252 -2.4355 1.7994 21 9 -0.1472 -1.4414 1.9525 22 9 0.2832 -3.6762 2.1517 23 9 1.9167 -2.1515 2.6272 24 1 -0.4850 -0.8399 0.0143 25 1 3.7495 -2.6694 1.2068 26 1 2.7832 -3.8247 2.1549 27 1 4.7199 -4.5384 -0.0946 28 1 5.0163 -4.7625 1.6470 29 1 4.2386 -6.8695 0.5530 30 1 3.0946 -6.3029 1.7950 31 1 2.8575 -5.8433 -1.2146 32 1 1.8732 -6.9652 -0.2442 33 1 -0.2222 -5.7212 -0.9371 34 1 -0.2939 -3.9550 -0.7282 35 1 0.3112 -4.5633 -2.9573 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261154366.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:20 Heat of formation + Delta-G solvation = -211.759398 kcal Electronic energy + Delta-G solvation = -23270.468325 eV Core-core repulsion = 19466.892234 eV Total energy + Delta-G solvation = -3803.576091 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.98626 -48.47427 -48.36556 -40.38907 -37.23744 -36.09311 -33.88556 -32.38927 -29.59430 -27.14777 -26.45084 -24.97017 -23.20457 -22.22138 -20.88225 -19.59852 -19.24352 -18.93147 -18.31888 -17.68981 -17.05412 -16.11172 -15.73999 -15.62672 -15.37495 -15.23709 -15.01392 -14.91816 -14.71208 -14.58263 -14.32515 -14.14000 -13.95143 -13.80470 -13.30762 -12.93629 -12.89255 -12.49675 -12.44583 -11.94905 -11.92202 -11.64508 -11.38509 -11.13818 -11.05643 -10.71508 -10.40223 -9.13045 -8.71406 -6.44329 1.54258 1.60170 1.80947 2.10532 2.50487 2.83561 2.96336 3.43277 3.45890 3.54659 3.64141 3.87218 3.91958 4.02419 4.21663 4.38379 4.41682 4.46070 4.64047 4.70471 4.73962 4.93128 4.96062 5.05422 5.08679 5.26460 5.29473 5.51040 5.64504 5.96343 6.25516 6.39171 6.52743 6.96675 7.29419 8.64095 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.021272 B = 0.008976 C = 0.008853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.965095 B = 3118.515293 C = 3161.990498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.014 4.014 3 Si 1.109 2.891 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.600 4.600 8 H 0.061 0.939 9 C 0.176 3.824 10 H 0.063 0.937 11 N -0.500 5.500 12 C 0.047 3.953 13 C -0.111 4.111 14 C -0.116 4.116 15 C -0.096 4.096 16 C 0.052 3.948 17 H 0.060 0.940 18 C 0.084 3.916 19 O -0.567 6.567 20 C 0.393 3.607 21 F -0.193 7.193 22 F -0.206 7.206 23 F -0.192 7.192 24 H 0.264 0.736 25 H 0.063 0.937 26 H 0.025 0.975 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.023 0.977 35 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.167 -10.942 0.439 11.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.218 4.218 3 Si 0.930 3.070 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.637 4.637 8 H 0.079 0.921 9 C 0.065 3.935 10 H 0.080 0.920 11 N -0.223 5.223 12 C -0.081 4.081 13 C -0.149 4.149 14 C -0.154 4.154 15 C -0.134 4.134 16 C -0.056 4.056 17 H 0.078 0.922 18 C 0.006 3.994 19 O -0.373 6.373 20 C 0.336 3.664 21 F -0.175 7.175 22 F -0.188 7.188 23 F -0.173 7.173 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.043 0.957 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.041 0.959 35 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 3.734 -9.308 0.338 10.034 hybrid contribution -1.283 -1.404 0.959 2.130 sum 2.451 -10.712 1.297 11.065 Atomic orbital electron populations 1.70877 1.07762 1.31043 1.43488 1.27194 0.96312 1.06140 0.92127 0.83033 0.74409 0.71536 0.77988 1.19132 1.20731 1.20046 1.21768 0.98059 0.91125 1.52756 0.92084 1.20671 0.95457 0.93663 0.83664 0.91982 1.62065 1.12374 1.01057 1.46790 1.22421 0.93788 1.00182 0.91712 1.21601 0.97110 0.93943 1.02205 1.21596 0.97881 0.97083 0.98818 1.21454 0.96247 0.96010 0.99701 1.22303 0.94928 0.91052 0.97309 0.92229 1.22253 0.93985 0.99193 0.83999 1.86567 1.37993 1.96475 1.16310 1.24439 0.74405 0.71713 0.95823 1.93121 1.64887 1.62827 1.96638 1.92964 1.87204 1.44285 1.94330 1.93006 1.54952 1.93476 1.75891 0.92504 0.91868 0.95661 0.91882 0.90042 0.89438 0.92287 0.91625 0.89887 0.90704 0.95869 0.76589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.34 12.29 21.45 0.26 -52.08 16 2 C -0.01 -0.75 4.92 84.65 0.42 -0.33 16 3 Si 1.11 49.45 29.93 68.60 2.05 51.51 16 4 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.60 -32.73 7.53 25.60 0.19 -32.54 16 8 H 0.06 3.39 7.32 -2.91 -0.02 3.37 16 9 C 0.18 8.69 1.61 44.17 0.07 8.76 16 10 H 0.06 3.25 4.51 -2.38 -0.01 3.24 16 11 N -0.50 -21.25 4.31 -850.42 -3.66 -24.92 16 12 C 0.05 1.84 3.88 86.33 0.33 2.17 16 13 C -0.11 -3.35 6.09 30.64 0.19 -3.17 16 14 C -0.12 -3.00 6.00 30.67 0.18 -2.81 16 15 C -0.10 -2.76 5.21 30.65 0.16 -2.60 16 16 C 0.05 1.84 1.78 44.94 0.08 1.92 16 17 H 0.06 2.18 5.49 -2.39 -0.01 2.16 16 18 C 0.08 2.77 6.28 71.98 0.45 3.22 16 19 O -0.57 -18.88 12.77 -148.98 -1.90 -20.78 16 20 C 0.39 19.17 2.35 71.98 0.17 19.34 16 21 F -0.19 -10.34 13.75 44.97 0.62 -9.72 16 22 F -0.21 -8.96 13.88 44.97 0.62 -8.34 16 23 F -0.19 -9.33 13.50 44.97 0.61 -8.72 16 24 H 0.26 15.49 5.66 -92.71 -0.52 14.96 16 25 H 0.06 2.78 6.72 -2.39 -0.02 2.76 16 26 H 0.03 1.03 5.74 -2.39 -0.01 1.01 16 27 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 2.08 7.59 -2.39 -0.02 2.06 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.02 0.88 5.85 -2.39 -0.01 0.87 16 35 H 0.39 9.19 9.12 -74.06 -0.68 8.52 16 Total: -1.00 -63.77 274.24 1.54 -62.23 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.70 Total: 16.88 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 2.25 Total: -6.05 kcal Atomic # 7 Polarization: -73.59 SS G_CDS: -3.40 Total: -76.99 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -1.90 Total: -20.78 kcal Atomic # 9 Polarization: -28.63 SS G_CDS: 1.85 Total: -26.78 kcal Atomic # 14 Polarization: 49.45 SS G_CDS: 2.05 Total: 51.51 kcal Total: -63.77 1.54 -62.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261154366.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.530 kcal (2) G-P(sol) polarization free energy of solvation -63.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds