Wall clock time and date at job start Mon Mar 30 2020 04:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86806 * 119.99976 * 2 1 4 4 H 1.48500 * 109.46836 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47108 * 299.99727 * 3 2 1 6 6 H 1.48503 * 109.46977 * 59.99837 * 3 2 1 7 7 C 1.37873 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99748 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99922 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47151 * 60.00125 * 9 7 2 11 11 N 1.46896 * 109.46819 * 180.02562 * 9 7 2 12 12 C 1.46847 * 111.00466 * 48.95465 * 11 9 7 13 13 C 1.53035 * 109.52644 * 174.15995 * 12 11 9 14 14 C 1.53120 * 109.27566 * 59.17819 * 13 12 11 15 15 C 1.53002 * 109.52220 * 182.44059 * 14 13 12 16 16 O 1.42898 * 109.47395 * 185.00362 * 15 14 13 17 17 C 1.53112 * 109.16528 * 302.34543 * 14 13 12 18 18 C 1.46847 * 111.00026 * 284.74274 * 11 9 7 19 19 C 1.53001 * 109.47163 * 299.99841 * 9 7 2 20 20 F 1.39900 * 109.47257 * 306.81017 * 19 9 7 21 21 F 1.39905 * 109.46949 * 66.80645 * 19 9 7 22 22 F 1.39893 * 109.46961 * 186.80745 * 19 9 7 23 23 H 0.97006 * 119.99678 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.45952 * 54.14788 * 12 11 9 25 25 H 1.08992 * 109.45406 * 294.17248 * 12 11 9 26 26 H 1.09007 * 109.50102 * 299.24433 * 13 12 11 27 27 H 1.08998 * 109.50514 * 179.12218 * 13 12 11 28 28 H 1.08997 * 109.52422 * 62.25956 * 14 13 12 29 29 H 1.09004 * 109.47487 * 305.00430 * 15 14 13 30 30 H 1.09000 * 109.46984 * 65.00131 * 15 14 13 31 31 H 0.96696 * 113.99950 * 180.02562 * 16 15 14 32 32 H 1.08995 * 109.50826 * 177.59500 * 17 14 13 33 33 H 1.08999 * 109.50841 * 297.71505 * 17 14 13 34 34 H 1.08998 * 109.46561 * 305.86057 * 18 11 9 35 35 H 1.09007 * 109.46098 * 65.82590 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8906 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8897 11 7 2.2056 -3.6157 0.0018 12 6 3.2311 -3.4303 1.0364 13 6 4.1182 -4.6753 1.1063 14 6 4.7772 -4.9036 -0.2569 15 6 5.6176 -6.1813 -0.2110 16 8 6.3240 -6.3315 -1.4440 17 6 3.6885 -5.0453 -1.3241 18 6 2.8138 -3.7895 -1.3235 19 6 0.3709 -2.5799 1.2495 20 9 1.1529 -2.3506 2.3866 21 9 -0.6365 -1.6121 1.1734 22 9 -0.2083 -3.8507 1.3303 23 1 -0.4850 0.8401 -0.0004 24 1 2.7491 -3.2732 2.0014 25 1 3.8424 -2.5622 0.7902 26 1 3.5096 -5.5417 1.3658 27 1 4.8888 -4.5311 1.8635 28 1 5.4165 -4.0547 -0.4991 29 1 6.3308 -6.1179 0.6109 30 1 4.9643 -7.0406 -0.0595 31 1 6.8783 -7.1227 -1.4859 32 1 4.1520 -5.1654 -2.3032 33 1 3.0732 -5.9174 -1.1028 34 1 2.0288 -3.8933 -2.0726 35 1 3.4272 -2.9196 -1.5585 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261154380.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:29 Heat of formation + Delta-G solvation = -212.214533 kcal Electronic energy + Delta-G solvation = -22341.602026 eV Core-core repulsion = 18538.006199 eV Total energy + Delta-G solvation = -3803.595827 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.38289 -48.00520 -47.68130 -40.16494 -37.77458 -35.65177 -33.95244 -31.69434 -30.22070 -27.16184 -26.45197 -24.00563 -23.36725 -22.18657 -20.65970 -19.24695 -18.79569 -18.52980 -18.12398 -17.27239 -16.80765 -16.11740 -15.92738 -15.60962 -15.23094 -14.89321 -14.82413 -14.65558 -14.39600 -14.21393 -14.12208 -14.02532 -13.85879 -13.66887 -13.00124 -12.88887 -12.73505 -12.58566 -12.29926 -12.17061 -11.94510 -11.69330 -11.50115 -11.20072 -10.97771 -10.72841 -10.66327 -9.11760 -8.15647 -6.47021 1.36499 1.39649 1.50044 2.32879 2.51946 2.96537 3.08068 3.40688 3.82633 3.89597 3.94134 3.97364 4.24107 4.28162 4.45447 4.55343 4.57537 4.68148 4.74543 4.80855 4.91523 4.99522 5.03619 5.16299 5.21405 5.26874 5.34792 5.52043 5.63052 5.79395 6.08784 6.39382 6.63511 7.01446 7.25073 8.73011 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.022107 B = 0.007311 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.290121 B = 3829.068411 C = 4523.633152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.022 3.978 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.280 1.280 7 C -0.566 4.566 8 H 0.071 0.929 9 C 0.183 3.817 10 H 0.050 0.950 11 N -0.531 5.531 12 C 0.044 3.956 13 C -0.099 4.099 14 C -0.088 4.088 15 C 0.089 3.911 16 O -0.592 6.592 17 C -0.093 4.093 18 C 0.066 3.934 19 C 0.441 3.559 20 F -0.201 7.201 21 F -0.159 7.159 22 F -0.212 7.212 23 H 0.266 0.734 24 H 0.073 0.927 25 H 0.026 0.974 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.395 0.605 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.798 -10.115 0.346 13.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.183 4.183 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.206 1.206 7 C -0.604 4.604 8 H 0.089 0.911 9 C 0.073 3.927 10 H 0.068 0.932 11 N -0.255 5.255 12 C -0.084 4.084 13 C -0.137 4.137 14 C -0.107 4.107 15 C 0.011 3.989 16 O -0.401 6.401 17 C -0.131 4.131 18 C -0.062 4.062 19 C 0.386 3.614 20 F -0.183 7.183 21 F -0.141 7.141 22 F -0.194 7.194 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.044 0.956 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.245 0.755 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 8.034 -9.884 0.340 12.742 hybrid contribution 0.438 1.438 0.208 1.518 sum 8.473 -8.445 0.548 11.975 Atomic orbital electron populations 1.70458 1.06876 1.27662 1.46041 1.25842 0.95772 1.02918 0.93744 0.85464 0.78974 0.79233 0.77812 1.19210 1.20074 1.20612 1.21559 0.93857 0.90489 1.54479 0.91115 1.20092 0.91769 0.90718 0.90165 0.93204 1.62180 1.16901 1.40425 1.06019 1.22323 0.93260 0.96953 0.95884 1.21539 0.98113 0.97607 0.96431 1.21166 0.96016 0.97862 0.95643 1.22148 0.94246 0.96564 0.85914 1.86449 1.64989 1.50527 1.38117 1.21485 0.95696 0.96706 0.99198 1.21952 0.97053 0.97371 0.89858 1.22229 0.80453 0.71807 0.86909 1.92888 1.74924 1.94518 1.55924 1.93313 1.62545 1.62132 1.96088 1.93022 1.86290 1.43090 1.96978 0.92396 0.90891 0.95560 0.90846 0.89920 0.92442 0.92255 0.92427 0.75493 0.90855 0.91196 0.91841 0.96040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.78 9.61 21.45 0.21 -48.57 16 2 C 0.02 1.18 5.28 84.65 0.45 1.63 16 3 Si 0.96 42.49 29.54 68.60 2.03 44.51 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.57 -29.61 6.92 25.60 0.18 -29.44 16 8 H 0.07 3.70 5.84 -2.91 -0.02 3.68 16 9 C 0.18 9.05 1.98 44.17 0.09 9.14 16 10 H 0.05 2.68 7.88 -2.39 -0.02 2.66 16 11 N -0.53 -22.28 4.37 -875.51 -3.83 -26.11 16 12 C 0.04 1.69 4.61 86.33 0.40 2.09 16 13 C -0.10 -2.85 5.38 30.65 0.16 -2.68 16 14 C -0.09 -2.40 2.49 -10.72 -0.03 -2.43 16 15 C 0.09 1.80 6.43 71.98 0.46 2.26 16 16 O -0.59 -12.23 13.26 -148.98 -1.98 -14.21 16 17 C -0.09 -2.77 5.25 30.65 0.16 -2.61 16 18 C 0.07 2.45 5.24 86.33 0.45 2.91 16 19 C 0.44 22.32 2.72 71.98 0.20 22.52 16 20 F -0.20 -9.96 13.94 44.97 0.63 -9.34 16 21 F -0.16 -8.81 13.28 44.97 0.60 -8.21 16 22 F -0.21 -10.08 17.11 44.97 0.77 -9.31 16 23 H 0.27 14.12 8.31 -92.70 -0.77 13.35 16 24 H 0.07 3.05 5.22 -2.38 -0.01 3.03 16 25 H 0.03 1.11 6.15 -2.39 -0.01 1.09 16 26 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 29 H 0.06 1.00 8.14 -2.38 -0.02 0.99 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.40 4.09 9.12 -74.06 -0.68 3.41 16 32 H 0.07 2.08 7.91 -2.39 -0.02 2.06 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.06 2.37 7.96 -2.39 -0.02 2.36 16 35 H 0.02 0.87 7.68 -2.38 -0.02 0.85 16 Total: -1.00 -60.65 283.64 1.38 -59.27 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 0.44 Total: 8.57 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 2.52 Total: 3.39 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -3.62 Total: -74.68 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -1.98 Total: -14.21 kcal Atomic # 9 Polarization: -28.85 SS G_CDS: 1.99 Total: -26.86 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -60.65 1.38 -59.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261154380.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.942 kcal (2) G-P(sol) polarization free energy of solvation -60.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds