Wall clock time and date at job start Mon Mar 30 2020 04:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99614 * 2 1 4 4 H 1.48500 * 109.46651 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47221 * 299.99487 * 3 2 1 6 6 H 1.48501 * 109.47361 * 60.00003 * 3 2 1 7 7 C 1.37877 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00006 * 187.28967 * 7 2 1 9 9 C 1.50706 * 119.99849 * 7.29258 * 7 2 1 10 10 H 1.08992 * 109.47219 * 329.42533 * 9 7 2 11 11 N 1.46901 * 109.46948 * 209.41869 * 9 7 2 12 12 C 1.46845 * 110.99660 * 44.69086 * 11 9 7 13 13 C 1.53039 * 109.52019 * 185.83858 * 12 11 9 14 14 C 1.53120 * 109.27732 * 300.82016 * 13 12 11 15 15 C 1.53006 * 109.52292 * 177.55843 * 14 13 12 16 16 O 1.42905 * 109.46757 * 65.32175 * 15 14 13 17 17 C 1.53117 * 109.15995 * 57.65751 * 14 13 12 18 18 C 1.46844 * 110.99840 * 168.90150 * 11 9 7 19 19 C 1.53001 * 109.46887 * 89.42157 * 9 7 2 20 20 F 1.39907 * 109.47122 * 66.38878 * 19 9 7 21 21 F 1.39900 * 109.47275 * 186.38902 * 19 9 7 22 22 F 1.39895 * 109.47412 * 306.39053 * 19 9 7 23 23 H 0.96998 * 119.99557 * 183.65243 * 1 2 3 24 24 H 1.08994 * 109.46705 * 305.85532 * 12 11 9 25 25 H 1.08997 * 109.46093 * 65.82914 * 12 11 9 26 26 H 1.09001 * 109.50533 * 180.88217 * 13 12 11 27 27 H 1.08994 * 109.50441 * 60.76372 * 13 12 11 28 28 H 1.08997 * 109.52688 * 297.75201 * 14 13 12 29 29 H 1.08996 * 109.47299 * 185.31516 * 15 14 13 30 30 H 1.09003 * 109.47224 * 305.32118 * 15 14 13 31 31 H 0.96698 * 113.99497 * 180.02562 * 16 15 14 32 32 H 1.08998 * 109.50350 * 182.40408 * 17 14 13 33 33 H 1.09004 * 109.50701 * 62.28812 * 17 14 13 34 34 H 1.09004 * 109.46487 * 294.17734 * 18 11 9 35 35 H 1.08997 * 109.46111 * 54.14689 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0781 -1.1978 0.1192 9 6 1.2602 -2.4940 -0.1646 10 1 0.2602 -2.3962 0.2578 11 7 1.9841 -3.5648 0.5335 12 6 2.4230 -3.1231 1.8633 13 6 3.2949 -4.2075 2.5005 14 6 2.4876 -5.5037 2.6133 15 6 3.3728 -6.6085 3.1936 16 8 3.7305 -6.2761 4.5366 17 6 2.0016 -5.9158 1.2210 18 6 1.1672 -4.7819 0.6210 19 6 1.1543 -2.8356 -1.6522 20 9 2.4297 -3.1040 -2.1609 21 9 0.3407 -3.9619 -1.8153 22 9 0.5960 -1.7534 -2.3407 23 1 -0.4849 -0.8384 0.0535 24 1 2.9994 -2.2029 1.7685 25 1 1.5512 -2.9422 2.4920 26 1 3.6077 -3.8860 3.4939 27 1 4.1740 -4.3792 1.8794 28 1 1.6295 -5.3428 3.2658 29 1 2.8278 -7.5524 3.1859 30 1 4.2756 -6.7052 2.5904 31 1 4.2932 -6.9337 4.9679 32 1 1.3903 -6.8148 1.3003 33 1 2.8604 -6.1145 0.5797 34 1 0.3012 -4.5932 1.2555 35 1 0.8316 -5.0664 -0.3762 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261154381.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:33 Heat of formation + Delta-G solvation = -215.213420 kcal Electronic energy + Delta-G solvation = -22192.035870 eV Core-core repulsion = 18388.310001 eV Total energy + Delta-G solvation = -3803.725869 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.86082 -46.46813 -46.20121 -38.82999 -36.72890 -34.36234 -32.27959 -30.37643 -28.59035 -25.63309 -24.65883 -22.45344 -21.97042 -20.84134 -19.36408 -17.60471 -17.40770 -17.24250 -16.92896 -15.92541 -15.20384 -14.92788 -14.36321 -14.00636 -13.83248 -13.56649 -13.41186 -13.26340 -12.78836 -12.71117 -12.59743 -12.54827 -12.45696 -12.26965 -11.67523 -11.48017 -11.03873 -10.95626 -10.80158 -10.63583 -10.34711 -10.19840 -10.13279 -9.76978 -9.71866 -8.90369 -8.65590 -7.54684 -6.66628 -4.44336 3.35594 3.38672 3.53811 4.02877 4.22095 4.33033 4.54673 4.96185 4.98356 5.07241 5.22831 5.42900 5.51728 5.53493 5.65894 5.66675 5.81251 5.83195 5.90758 6.03930 6.17329 6.27147 6.35879 6.38718 6.51542 6.58802 6.81503 6.87887 7.38685 7.58870 7.69351 8.03661 8.28878 8.52383 9.30053 10.69560 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.020784 B = 0.007346 C = 0.005926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.876065 B = 3810.494471 C = 4724.008676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.036 3.964 3 Si 1.077 2.923 4 H -0.284 1.284 5 H -0.282 1.282 6 H -0.285 1.285 7 C -0.601 4.601 8 H 0.073 0.927 9 C 0.166 3.834 10 H 0.045 0.955 11 N -0.527 5.527 12 C 0.074 3.926 13 C -0.106 4.106 14 C -0.089 4.089 15 C 0.082 3.918 16 O -0.572 6.572 17 C -0.104 4.104 18 C 0.031 3.969 19 C 0.439 3.561 20 F -0.187 7.187 21 F -0.216 7.216 22 F -0.181 7.181 23 H 0.270 0.730 24 H 0.097 0.903 25 H 0.022 0.978 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.045 0.955 31 H 0.374 0.626 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.026 0.974 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.616 -10.533 4.099 12.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.173 4.173 3 Si 0.904 3.096 4 H -0.209 1.209 5 H -0.208 1.208 6 H -0.211 1.211 7 C -0.637 4.637 8 H 0.092 0.908 9 C 0.056 3.944 10 H 0.062 0.938 11 N -0.252 5.252 12 C -0.053 4.053 13 C -0.144 4.144 14 C -0.108 4.108 15 C 0.005 3.995 16 O -0.377 6.377 17 C -0.142 4.142 18 C -0.097 4.097 19 C 0.384 3.616 20 F -0.169 7.169 21 F -0.198 7.198 22 F -0.163 7.163 23 H 0.082 0.918 24 H 0.115 0.885 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.220 0.780 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.443 -8.484 3.607 10.234 hybrid contribution -0.373 -2.208 0.205 2.248 sum 4.069 -10.692 3.812 12.058 Atomic orbital electron populations 1.70774 1.07059 1.31013 1.42654 1.26054 0.96221 1.03144 0.91868 0.83430 0.74753 0.74171 0.77279 1.20914 1.20807 1.21103 1.21693 0.96023 0.89179 1.56843 0.90837 1.20370 0.97094 0.92245 0.84658 0.93770 1.61634 1.40239 1.03969 1.19351 1.21941 0.97868 0.98272 0.87241 1.21631 0.98447 0.94068 1.00258 1.21231 0.98173 0.95197 0.96209 1.22271 0.97689 0.96979 0.82601 1.86519 1.72674 1.50772 1.27725 1.21518 1.00133 0.97398 0.95136 1.22498 0.94241 0.91395 1.01561 1.22235 0.72202 0.72154 0.94982 1.93043 1.40616 1.93791 1.89404 1.92929 1.74950 1.55141 1.96763 1.93110 1.85463 1.55703 1.82013 0.91800 0.88450 0.95930 0.91491 0.91723 0.91111 0.94160 0.93655 0.78043 0.92156 0.91178 0.95624 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.03 13.48 55.43 0.75 -24.29 16 2 C 0.04 0.97 5.02 -17.82 -0.09 0.88 16 3 Si 1.08 24.09 29.91 -169.99 -5.08 19.00 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.60 -15.71 6.37 -34.44 -0.22 -15.93 16 8 H 0.07 1.95 7.05 -52.49 -0.37 1.58 16 9 C 0.17 4.02 1.65 -68.86 -0.11 3.91 16 10 H 0.04 1.16 6.17 -51.93 -0.32 0.84 16 11 N -0.53 -11.16 4.33 -228.09 -0.99 -12.15 16 12 C 0.07 1.47 5.07 -3.83 -0.02 1.45 16 13 C -0.11 -1.74 5.25 -26.65 -0.14 -1.88 16 14 C -0.09 -1.30 2.49 -90.49 -0.23 -1.53 16 15 C 0.08 0.97 6.43 37.16 0.24 1.21 16 16 O -0.57 -6.84 13.26 -35.23 -0.47 -7.31 16 17 C -0.10 -1.54 5.38 -26.65 -0.14 -1.68 16 18 C 0.03 0.57 5.18 -3.84 -0.02 0.55 16 19 C 0.44 10.60 2.77 37.16 0.10 10.71 16 20 F -0.19 -4.51 16.98 2.25 0.04 -4.47 16 21 F -0.22 -4.76 14.39 2.25 0.03 -4.73 16 22 F -0.18 -4.71 16.35 2.25 0.04 -4.67 16 23 H 0.27 7.69 6.50 -40.82 -0.27 7.42 16 24 H 0.10 2.10 6.03 -51.93 -0.31 1.79 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 1.07 7.91 -51.93 -0.41 0.66 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.37 2.58 9.12 45.56 0.42 2.99 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.09 1.66 5.20 -51.93 -0.27 1.39 16 LS Contribution 288.74 15.07 4.35 4.35 Total: -1.00 -29.12 288.74 -5.67 -34.79 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -3.71 Total: 1.77 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -0.63 Total: -2.30 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: -0.24 Total: -36.43 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.47 Total: -7.31 kcal Atomic # 9 Polarization: -13.98 SS G_CDS: 0.11 Total: -13.87 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -5.08 Total: 19.00 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.12 -5.67 -34.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261154381.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.421 kcal (2) G-P(sol) polarization free energy of solvation -29.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds