Wall clock time and date at job start Mon Mar 30 2020 04:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99614 * 2 1 4 4 H 1.48500 * 109.46651 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47221 * 299.99487 * 3 2 1 6 6 H 1.48501 * 109.47361 * 60.00003 * 3 2 1 7 7 C 1.37877 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00006 * 187.28967 * 7 2 1 9 9 C 1.50706 * 119.99849 * 7.29258 * 7 2 1 10 10 H 1.08992 * 109.47219 * 329.42533 * 9 7 2 11 11 N 1.46901 * 109.46948 * 209.41869 * 9 7 2 12 12 C 1.46845 * 110.99660 * 44.69086 * 11 9 7 13 13 C 1.53039 * 109.52019 * 185.83858 * 12 11 9 14 14 C 1.53120 * 109.27732 * 300.82016 * 13 12 11 15 15 C 1.53006 * 109.52292 * 177.55843 * 14 13 12 16 16 O 1.42905 * 109.46757 * 65.32175 * 15 14 13 17 17 C 1.53117 * 109.15995 * 57.65751 * 14 13 12 18 18 C 1.46844 * 110.99840 * 168.90150 * 11 9 7 19 19 C 1.53001 * 109.46887 * 89.42157 * 9 7 2 20 20 F 1.39907 * 109.47122 * 66.38878 * 19 9 7 21 21 F 1.39900 * 109.47275 * 186.38902 * 19 9 7 22 22 F 1.39895 * 109.47412 * 306.39053 * 19 9 7 23 23 H 0.96998 * 119.99557 * 183.65243 * 1 2 3 24 24 H 1.08994 * 109.46705 * 305.85532 * 12 11 9 25 25 H 1.08997 * 109.46093 * 65.82914 * 12 11 9 26 26 H 1.09001 * 109.50533 * 180.88217 * 13 12 11 27 27 H 1.08994 * 109.50441 * 60.76372 * 13 12 11 28 28 H 1.08997 * 109.52688 * 297.75201 * 14 13 12 29 29 H 1.08996 * 109.47299 * 185.31516 * 15 14 13 30 30 H 1.09003 * 109.47224 * 305.32118 * 15 14 13 31 31 H 0.96698 * 113.99497 * 180.02562 * 16 15 14 32 32 H 1.08998 * 109.50350 * 182.40408 * 17 14 13 33 33 H 1.09004 * 109.50701 * 62.28812 * 17 14 13 34 34 H 1.09004 * 109.46487 * 294.17734 * 18 11 9 35 35 H 1.08997 * 109.46111 * 54.14689 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0781 -1.1978 0.1192 9 6 1.2602 -2.4940 -0.1646 10 1 0.2602 -2.3962 0.2578 11 7 1.9841 -3.5648 0.5335 12 6 2.4230 -3.1231 1.8633 13 6 3.2949 -4.2075 2.5005 14 6 2.4876 -5.5037 2.6133 15 6 3.3728 -6.6085 3.1936 16 8 3.7305 -6.2761 4.5366 17 6 2.0016 -5.9158 1.2210 18 6 1.1672 -4.7819 0.6210 19 6 1.1543 -2.8356 -1.6522 20 9 2.4297 -3.1040 -2.1609 21 9 0.3407 -3.9619 -1.8153 22 9 0.5960 -1.7534 -2.3407 23 1 -0.4849 -0.8384 0.0535 24 1 2.9994 -2.2029 1.7685 25 1 1.5512 -2.9422 2.4920 26 1 3.6077 -3.8860 3.4939 27 1 4.1740 -4.3792 1.8794 28 1 1.6295 -5.3428 3.2658 29 1 2.8278 -7.5524 3.1859 30 1 4.2756 -6.7052 2.5904 31 1 4.2932 -6.9337 4.9679 32 1 1.3903 -6.8148 1.3003 33 1 2.8604 -6.1145 0.5797 34 1 0.3012 -4.5932 1.2555 35 1 0.8316 -5.0664 -0.3762 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261154381.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:33 Heat of formation + Delta-G solvation = -235.863130 kcal Electronic energy + Delta-G solvation = -22192.931308 eV Core-core repulsion = 18388.310001 eV Total energy + Delta-G solvation = -3804.621307 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.82553 -48.41170 -48.20920 -40.24955 -37.86013 -35.99016 -33.97695 -31.81570 -30.27933 -27.00973 -26.63516 -23.94249 -23.58650 -22.45185 -20.70329 -19.55951 -19.32019 -18.91774 -18.16209 -17.77745 -16.85308 -16.04184 -15.97028 -15.68031 -15.43964 -15.23156 -15.12426 -14.91232 -14.74389 -14.55661 -14.45575 -14.17227 -14.03520 -13.80730 -13.14850 -13.00632 -12.78408 -12.69725 -12.42033 -12.12309 -11.92746 -11.63650 -11.40211 -11.16930 -10.90000 -10.71409 -10.67391 -9.30206 -8.79230 -6.57334 1.54067 1.59573 1.79249 2.08855 2.47479 2.80698 2.95656 3.34159 3.47620 3.63853 3.75658 3.84794 3.94183 4.16144 4.30396 4.41932 4.46411 4.51197 4.61685 4.64538 4.71240 4.86623 4.96443 5.04691 5.06811 5.20385 5.27646 5.45588 5.48467 5.84153 6.18461 6.31865 6.44353 6.98363 7.23702 8.56515 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.020784 B = 0.007346 C = 0.005926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.876065 B = 3810.494471 C = 4724.008676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.006 4.006 3 Si 1.116 2.884 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.603 4.603 8 H 0.067 0.933 9 C 0.166 3.834 10 H 0.021 0.979 11 N -0.529 5.529 12 C 0.077 3.923 13 C -0.095 4.095 14 C -0.089 4.089 15 C 0.089 3.911 16 O -0.593 6.593 17 C -0.095 4.095 18 C 0.027 3.973 19 C 0.443 3.557 20 F -0.185 7.185 21 F -0.203 7.203 22 F -0.194 7.194 23 H 0.258 0.742 24 H 0.075 0.925 25 H 0.006 0.994 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.396 0.604 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.018 0.982 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.913 -11.983 4.653 14.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.210 4.210 3 Si 0.937 3.063 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.640 4.640 8 H 0.085 0.915 9 C 0.056 3.944 10 H 0.039 0.961 11 N -0.254 5.254 12 C -0.051 4.051 13 C -0.133 4.133 14 C -0.108 4.108 15 C 0.011 3.989 16 O -0.402 6.402 17 C -0.132 4.132 18 C -0.101 4.101 19 C 0.387 3.613 20 F -0.167 7.167 21 F -0.184 7.184 22 F -0.175 7.175 23 H 0.069 0.931 24 H 0.093 0.907 25 H 0.024 0.976 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.246 0.754 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.036 0.964 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.757 -9.977 4.175 12.253 hybrid contribution -0.784 -1.832 0.050 1.994 sum 4.973 -11.810 4.225 13.493 Atomic orbital electron populations 1.70886 1.07937 1.30271 1.45052 1.27316 0.96239 1.06366 0.91032 0.82950 0.74639 0.71069 0.77638 1.19152 1.20586 1.20059 1.21840 0.95747 0.90147 1.56217 0.91453 1.20231 0.96023 0.93080 0.85021 0.96142 1.61696 1.40107 1.03846 1.19736 1.21913 0.97454 0.99024 0.86684 1.21528 0.97912 0.93927 0.99947 1.21198 0.98143 0.95285 0.96164 1.22144 0.97778 0.96261 0.82679 1.86455 1.73485 1.52357 1.27860 1.21474 1.00124 0.96711 0.94927 1.22612 0.94584 0.91367 1.01541 1.22034 0.72362 0.72282 0.94587 1.93040 1.40527 1.93762 1.89341 1.92952 1.74542 1.54225 1.96709 1.93086 1.85682 1.56503 1.82269 0.93140 0.90688 0.97606 0.91037 0.91421 0.92246 0.91867 0.92549 0.75425 0.89109 0.90677 0.96359 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.60 13.48 21.45 0.29 -52.31 16 2 C -0.01 -0.35 5.02 84.65 0.42 0.08 16 3 Si 1.12 48.32 29.91 68.60 2.05 50.38 16 4 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.60 -31.98 6.37 25.60 0.16 -31.82 16 8 H 0.07 3.61 7.05 -2.91 -0.02 3.59 16 9 C 0.17 8.24 1.65 44.17 0.07 8.31 16 10 H 0.02 1.14 6.17 -2.39 -0.01 1.12 16 11 N -0.53 -22.40 4.33 -875.53 -3.79 -26.19 16 12 C 0.08 3.07 5.07 86.33 0.44 3.51 16 13 C -0.10 -3.00 5.25 30.65 0.16 -2.84 16 14 C -0.09 -2.39 2.49 -10.71 -0.03 -2.42 16 15 C 0.09 1.77 6.43 71.98 0.46 2.23 16 16 O -0.59 -12.31 13.26 -148.98 -1.98 -14.29 16 17 C -0.09 -2.54 5.38 30.65 0.16 -2.38 16 18 C 0.03 0.96 5.18 86.33 0.45 1.41 16 19 C 0.44 21.43 2.77 71.98 0.20 21.63 16 20 F -0.19 -8.83 16.98 44.97 0.76 -8.07 16 21 F -0.20 -8.87 14.39 44.97 0.65 -8.22 16 22 F -0.19 -10.17 16.35 44.97 0.74 -9.43 16 23 H 0.26 15.21 6.50 -92.71 -0.60 14.60 16 24 H 0.07 3.30 6.03 -2.39 -0.01 3.29 16 25 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 26 H 0.07 2.19 7.91 -2.39 -0.02 2.17 16 27 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.40 4.11 9.12 -74.06 -0.68 3.44 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.92 16 33 H 0.07 1.98 8.14 -2.38 -0.02 1.97 16 34 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.08 3.03 5.20 -2.39 -0.01 3.02 16 Total: -1.00 -62.52 288.74 1.83 -60.69 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.61 Total: 9.73 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 2.51 Total: -2.29 kcal Atomic # 7 Polarization: -75.00 SS G_CDS: -3.50 Total: -78.50 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -1.98 Total: -14.29 kcal Atomic # 9 Polarization: -27.87 SS G_CDS: 2.15 Total: -25.72 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.05 Total: 50.38 kcal Total: -62.52 1.83 -60.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261154381.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.177 kcal (2) G-P(sol) polarization free energy of solvation -62.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds