Wall clock time and date at job start Mon Mar 30 2020 06:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 5 5 H 1.07994 * 120.00496 * 239.99942 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00100 * 4 2 1 7 7 N 1.31518 * 120.00216 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00016 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47172 * 0.02562 * 8 6 4 10 10 H 1.48493 * 109.47304 * 120.00302 * 8 6 4 11 11 H 1.48502 * 109.47432 * 240.00422 * 8 6 4 12 12 N 1.46902 * 109.46626 * 119.99824 * 2 1 3 13 13 C 1.46901 * 111.00221 * 274.99771 * 12 2 1 14 14 H 1.09003 * 109.54006 * 35.00445 * 13 12 2 15 15 C 1.53173 * 109.54663 * 274.82742 * 13 12 2 16 16 C 1.53092 * 109.16705 * 183.15203 * 15 13 12 17 17 O 1.42903 * 109.41424 * 57.60702 * 16 15 13 18 18 C 1.42907 * 114.09810 * 298.84339 * 17 16 15 19 19 H 1.08995 * 109.48156 * 301.17938 * 18 17 16 20 20 C 1.52997 * 109.48193 * 181.14129 * 18 17 16 21 21 F 1.39899 * 109.47295 * 59.99733 * 20 18 17 22 22 F 1.39894 * 109.47024 * 180.02562 * 20 18 17 23 23 F 1.39908 * 109.46909 * 299.99989 * 20 18 17 24 24 C 1.53109 * 109.48571 * 61.10905 * 18 17 16 25 25 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 26 26 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 29 29 H 1.00903 * 111.00184 * 38.95769 * 12 2 1 30 30 H 1.09002 * 109.51905 * 303.05863 * 15 13 12 31 31 H 1.09001 * 109.52335 * 63.18276 * 15 13 12 32 32 H 1.08999 * 109.48207 * 177.58971 * 16 15 13 33 33 H 1.08999 * 109.47725 * 297.61398 * 16 15 13 34 34 H 1.08995 * 109.59858 * 182.57350 * 24 18 17 35 35 H 1.09006 * 109.45110 * 62.39075 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 3.1475 -2.2864 -3.6037 10 1 1.1679 -1.5866 -4.8164 11 1 3.1474 -0.1859 -4.8160 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3470 14 1 1.2580 0.9335 2.2919 15 6 3.4139 0.9795 2.3265 16 6 3.5040 1.8717 3.5674 17 8 3.3742 1.0672 4.7413 18 6 2.1289 0.3728 4.8380 19 1 1.3100 1.0921 4.8298 20 6 2.0914 -0.4287 6.1406 21 9 2.2256 0.4416 7.2277 22 9 0.8725 -1.1088 6.2347 23 9 3.1422 -1.3523 6.1503 24 6 1.9813 -0.5793 3.6481 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7090 1.1614 -3.4844 29 1 1.4495 -1.4979 1.4101 30 1 4.2383 0.2664 2.3300 31 1 3.4690 1.5956 1.4290 32 1 4.4680 2.3804 3.5801 33 1 2.7033 2.6107 3.5425 34 1 1.0124 -1.0763 3.6954 35 1 2.7759 -1.3250 3.6791 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309388463.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:43 Heat of formation + Delta-G solvation = -207.401970 kcal Electronic energy + Delta-G solvation = -21409.726098 eV Core-core repulsion = 17606.338959 eV Total energy + Delta-G solvation = -3803.387139 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.16937 -47.71233 -47.61409 -39.58095 -36.28853 -33.37000 -32.08829 -31.11458 -27.95964 -26.21547 -25.16978 -23.64312 -22.54993 -20.45989 -19.91407 -18.60193 -18.35972 -17.92400 -16.34266 -16.09879 -15.55927 -15.08259 -14.71909 -14.57834 -14.47446 -14.29406 -14.08431 -13.88811 -13.79193 -13.74303 -13.22414 -12.77516 -12.29178 -12.06361 -11.83760 -11.53814 -11.37183 -11.03487 -10.90319 -10.69453 -10.48016 -10.39567 -10.16655 -10.00130 -9.63930 -9.03241 -8.41432 -7.37652 -6.03877 -4.07073 2.41713 3.27736 3.28630 3.36789 3.42057 3.69728 3.90203 4.39547 4.42202 4.64359 4.78826 4.91635 5.09450 5.15382 5.28339 5.39060 5.44880 5.73164 5.82606 5.93548 6.09030 6.30932 6.59441 6.61088 6.75125 6.85268 7.02070 7.27180 7.67110 7.83103 8.19926 8.43206 8.53302 9.00685 9.58767 11.03259 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.037257 B = 0.004378 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.358240 B = 6393.996783 C = 6556.642067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.035 0.965 4 C -0.494 4.494 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.677 5.677 13 C 0.093 3.907 14 H 0.040 0.960 15 C -0.145 4.145 16 C 0.065 3.935 17 O -0.368 6.368 18 C 0.054 3.946 19 H 0.099 0.901 20 C 0.465 3.535 21 F -0.179 7.179 22 F -0.176 7.176 23 F -0.174 7.174 24 C -0.155 4.155 25 H 0.004 0.996 26 H 0.089 0.911 27 H 0.028 0.972 28 H 0.259 0.741 29 H 0.328 0.672 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.217 0.863 15.155 15.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.104 3.896 3 H 0.053 0.947 4 C -0.533 4.533 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.307 5.307 13 C -0.018 4.018 14 H 0.058 0.942 15 C -0.183 4.183 16 C -0.011 4.011 17 O -0.287 6.287 18 C -0.007 4.007 19 H 0.117 0.883 20 C 0.410 3.590 21 F -0.161 7.161 22 F -0.158 7.158 23 F -0.155 7.155 24 C -0.193 4.193 25 H 0.023 0.977 26 H 0.108 0.892 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.146 0.854 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.957 1.020 14.998 15.160 hybrid contribution -0.985 -0.374 -0.694 1.262 sum 0.972 0.646 14.305 14.352 Atomic orbital electron populations 1.22453 1.00733 0.99289 1.00483 1.19227 0.89527 0.94450 0.86417 0.94741 1.21177 1.30175 1.12463 0.89514 0.91853 1.24949 0.95302 0.95191 0.99085 1.69887 1.37373 1.23219 1.23301 0.86452 0.78528 0.79680 0.82816 1.19717 1.21210 1.21127 1.60860 1.58263 1.08676 1.02879 1.21349 0.96375 0.94503 0.89584 0.94176 1.22250 0.98976 0.99501 0.97587 1.22803 1.02519 0.92176 0.83640 1.87890 1.33688 1.63071 1.44026 1.23062 0.90898 0.95437 0.91255 0.88340 1.20219 0.73650 0.78753 0.86354 1.93190 1.95522 1.69286 1.58082 1.93194 1.44951 1.81057 1.96587 1.93201 1.57771 1.67768 1.96778 1.22465 1.04350 0.98789 0.93728 0.97721 0.89190 0.95253 0.93098 0.85447 0.90164 0.89835 0.87841 0.92771 0.89944 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.92 8.92 37.16 0.33 -3.59 16 2 C 0.21 5.03 2.39 -68.86 -0.16 4.86 16 3 H 0.03 0.90 7.16 -51.93 -0.37 0.53 16 4 C -0.49 -13.25 8.84 -34.44 -0.30 -13.55 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 6 C 0.06 1.49 5.30 -17.82 -0.09 1.40 16 7 N -0.90 -25.04 11.32 55.43 0.63 -24.41 16 8 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 12 N -0.68 -13.38 6.04 -100.76 -0.61 -13.99 16 13 C 0.09 1.50 2.38 -67.53 -0.16 1.34 16 14 H 0.04 0.68 7.12 -51.93 -0.37 0.31 16 15 C -0.14 -2.20 5.62 -26.59 -0.15 -2.34 16 16 C 0.06 0.79 6.84 37.20 0.25 1.05 16 17 O -0.37 -4.94 10.30 -35.23 -0.36 -5.30 16 18 C 0.05 0.67 2.62 -26.68 -0.07 0.60 16 19 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 20 C 0.46 5.78 2.85 37.16 0.11 5.89 16 21 F -0.18 -2.29 17.26 2.25 0.04 -2.25 16 22 F -0.18 -2.13 16.85 2.25 0.04 -2.09 16 23 F -0.17 -2.35 16.70 2.25 0.04 -2.32 16 24 C -0.16 -2.10 4.45 -26.59 -0.12 -2.22 16 25 H 0.00 0.08 7.43 -51.93 -0.39 -0.31 16 26 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 27 H 0.03 0.65 8.13 -51.93 -0.42 0.22 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.33 6.19 8.11 -39.29 -0.32 5.87 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.08 1.39 7.49 -51.93 -0.39 1.00 16 32 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.03 7.88 -51.93 -0.41 0.62 16 35 H 0.09 1.32 7.74 -51.93 -0.40 0.92 16 LS Contribution 295.36 15.07 4.45 4.45 Total: -1.00 -27.76 295.36 -5.79 -33.55 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -4.62 Total: 2.86 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -0.37 Total: -6.57 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.02 Total: -38.41 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.36 Total: -5.30 kcal Atomic # 9 Polarization: -6.77 SS G_CDS: 0.11 Total: -6.66 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.76 -5.79 -33.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309388463.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.852 kcal (2) G-P(sol) polarization free energy of solvation -27.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds