Wall clock time and date at job start Mon Mar 30 2020 06:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 5 5 H 1.07994 * 120.00496 * 239.99942 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00100 * 4 2 1 7 7 N 1.31518 * 120.00216 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00016 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47172 * 0.02562 * 8 6 4 10 10 H 1.48493 * 109.47304 * 120.00302 * 8 6 4 11 11 H 1.48502 * 109.47432 * 240.00422 * 8 6 4 12 12 N 1.46902 * 109.46626 * 119.99824 * 2 1 3 13 13 C 1.46901 * 111.00221 * 274.99771 * 12 2 1 14 14 H 1.09003 * 109.54006 * 35.00445 * 13 12 2 15 15 C 1.53173 * 109.54663 * 274.82742 * 13 12 2 16 16 C 1.53092 * 109.16705 * 183.15203 * 15 13 12 17 17 O 1.42903 * 109.41424 * 57.60702 * 16 15 13 18 18 C 1.42907 * 114.09810 * 298.84339 * 17 16 15 19 19 H 1.08995 * 109.48156 * 301.17938 * 18 17 16 20 20 C 1.52997 * 109.48193 * 181.14129 * 18 17 16 21 21 F 1.39899 * 109.47295 * 59.99733 * 20 18 17 22 22 F 1.39894 * 109.47024 * 180.02562 * 20 18 17 23 23 F 1.39908 * 109.46909 * 299.99989 * 20 18 17 24 24 C 1.53109 * 109.48571 * 61.10905 * 18 17 16 25 25 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 26 26 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 29 29 H 1.00903 * 111.00184 * 38.95769 * 12 2 1 30 30 H 1.09002 * 109.51905 * 303.05863 * 15 13 12 31 31 H 1.09001 * 109.52335 * 63.18276 * 15 13 12 32 32 H 1.08999 * 109.48207 * 177.58971 * 16 15 13 33 33 H 1.08999 * 109.47725 * 297.61398 * 16 15 13 34 34 H 1.08995 * 109.59858 * 182.57350 * 24 18 17 35 35 H 1.09006 * 109.45110 * 62.39075 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 3.1475 -2.2864 -3.6037 10 1 1.1679 -1.5866 -4.8164 11 1 3.1474 -0.1859 -4.8160 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3470 14 1 1.2580 0.9335 2.2919 15 6 3.4139 0.9795 2.3265 16 6 3.5040 1.8717 3.5674 17 8 3.3742 1.0672 4.7413 18 6 2.1289 0.3728 4.8380 19 1 1.3100 1.0921 4.8298 20 6 2.0914 -0.4287 6.1406 21 9 2.2256 0.4416 7.2277 22 9 0.8725 -1.1088 6.2347 23 9 3.1422 -1.3523 6.1503 24 6 1.9813 -0.5793 3.6481 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7090 1.1614 -3.4844 29 1 1.4495 -1.4979 1.4101 30 1 4.2383 0.2664 2.3300 31 1 3.4690 1.5956 1.4290 32 1 4.4680 2.3804 3.5801 33 1 2.7033 2.6107 3.5425 34 1 1.0124 -1.0763 3.6954 35 1 2.7759 -1.3250 3.6791 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309388463.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:43 Heat of formation + Delta-G solvation = -225.092434 kcal Electronic energy + Delta-G solvation = -21410.493214 eV Core-core repulsion = 17606.338959 eV Total energy + Delta-G solvation = -3804.154255 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.15670 -48.68414 -48.62444 -40.70127 -37.83522 -35.08623 -33.21567 -32.73411 -29.49755 -27.46604 -27.15330 -24.78512 -23.70696 -22.06640 -21.28004 -19.59367 -19.40736 -18.97482 -18.27711 -17.12989 -16.79714 -16.64230 -16.25492 -15.76837 -15.47138 -15.37180 -15.29877 -15.06843 -14.79077 -14.77793 -14.67052 -14.37431 -13.83916 -13.52560 -13.14320 -13.10246 -12.89424 -12.62648 -12.45834 -12.33453 -12.12772 -12.07765 -11.63953 -11.42961 -11.02703 -10.78882 -10.47564 -9.00008 -8.09528 -6.19589 1.41868 1.43110 1.44803 1.56105 2.28735 2.44319 2.69172 2.91062 3.19616 3.42809 3.46962 3.69630 3.83225 3.95311 4.01290 4.27088 4.39033 4.49368 4.66071 4.74058 4.77128 4.89015 4.97624 5.00726 5.17957 5.31806 5.46117 5.71126 5.82531 5.85734 6.29036 6.64462 6.82703 6.95675 7.50580 8.96036 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.037257 B = 0.004378 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.358240 B = 6393.996783 C = 6556.642067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.218 3.782 3 H 0.008 0.992 4 C -0.512 4.512 5 H 0.053 0.947 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.956 3.044 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.682 5.682 13 C 0.091 3.909 14 H 0.038 0.962 15 C -0.142 4.142 16 C 0.071 3.929 17 O -0.376 6.376 18 C 0.055 3.945 19 H 0.121 0.879 20 C 0.469 3.531 21 F -0.180 7.180 22 F -0.173 7.173 23 F -0.182 7.182 24 C -0.146 4.146 25 H 0.027 0.973 26 H 0.060 0.940 27 H 0.031 0.969 28 H 0.260 0.740 29 H 0.333 0.667 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.124 0.876 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 0.790 16.047 16.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.110 3.890 3 H 0.026 0.974 4 C -0.551 4.551 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.783 3.217 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.208 1.208 12 N -0.313 5.313 13 C -0.019 4.019 14 H 0.056 0.944 15 C -0.181 4.181 16 C -0.005 4.005 17 O -0.296 6.296 18 C -0.005 4.005 19 H 0.139 0.861 20 C 0.414 3.586 21 F -0.161 7.161 22 F -0.155 7.155 23 F -0.163 7.163 24 C -0.184 4.184 25 H 0.046 0.954 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.151 0.849 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.142 0.858 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.922 0.942 15.910 16.054 hybrid contribution -0.966 -0.351 -0.934 1.389 sum 0.956 0.591 14.976 15.018 Atomic orbital electron populations 1.22267 1.00092 0.99279 1.00151 1.18943 0.89840 0.92924 0.87294 0.97389 1.21476 1.30176 1.12347 0.91119 0.92921 1.25655 0.95516 0.95860 1.01730 1.70001 1.38132 1.24229 1.23862 0.85526 0.78033 0.78627 0.79524 1.19487 1.20747 1.20835 1.60712 1.58058 1.09314 1.03175 1.21415 0.96791 0.94233 0.89491 0.94366 1.22198 0.97992 0.99401 0.98490 1.22836 1.04394 0.91514 0.81708 1.87890 1.34258 1.63287 1.44131 1.23119 0.91371 0.95507 0.90502 0.86127 1.20167 0.73526 0.78541 0.86318 1.93192 1.95529 1.69287 1.58100 1.93204 1.44682 1.80997 1.96576 1.93190 1.58220 1.68090 1.96810 1.22342 1.04848 0.98526 0.92723 0.95382 0.92078 0.94978 0.93062 0.84862 0.91357 0.91857 0.85791 0.91189 0.88661 0.89657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.24 8.92 71.98 0.64 -6.60 16 2 C 0.22 10.47 2.39 44.17 0.11 10.57 16 3 H 0.01 0.43 7.16 -2.39 -0.02 0.42 16 4 C -0.51 -27.68 8.84 25.60 0.23 -27.45 16 5 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 6 C 0.01 0.57 5.30 84.65 0.45 1.02 16 7 N -0.92 -51.86 11.32 21.45 0.24 -51.61 16 8 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 12 N -0.68 -26.75 6.04 -472.70 -2.86 -29.61 16 13 C 0.09 2.84 2.38 45.03 0.11 2.95 16 14 H 0.04 1.23 7.12 -2.39 -0.02 1.21 16 15 C -0.14 -4.23 5.62 30.68 0.17 -4.05 16 16 C 0.07 1.60 6.84 72.01 0.49 2.09 16 17 O -0.38 -9.21 10.30 -148.98 -1.53 -10.75 16 18 C 0.06 1.23 2.62 30.63 0.08 1.31 16 19 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 20 C 0.47 10.63 2.85 71.98 0.21 10.83 16 21 F -0.18 -4.17 17.26 44.97 0.78 -3.40 16 22 F -0.17 -3.78 16.85 44.97 0.76 -3.02 16 23 F -0.18 -4.62 16.70 44.97 0.75 -3.86 16 24 C -0.15 -3.68 4.45 30.69 0.14 -3.54 16 25 H 0.03 1.10 7.43 -2.39 -0.02 1.09 16 26 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 27 H 0.03 1.40 8.13 -2.39 -0.02 1.38 16 28 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 29 H 0.33 12.31 8.11 -89.69 -0.73 11.59 16 30 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.06 2.13 7.49 -2.39 -0.02 2.11 16 32 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.09 2.16 7.88 -2.39 -0.02 2.14 16 35 H 0.08 2.30 7.74 -2.38 -0.02 2.28 16 Total: -1.00 -58.58 295.36 3.16 -55.41 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.38 Total: 14.37 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 2.62 Total: -12.88 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -2.61 Total: -81.22 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -1.53 Total: -10.75 kcal Atomic # 9 Polarization: -12.57 SS G_CDS: 2.28 Total: -10.29 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -58.58 3.16 -55.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309388463.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.678 kcal (2) G-P(sol) polarization free energy of solvation -58.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds