Wall clock time and date at job start Mon Mar 30 2020 06:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47287 * 2 1 4 4 C 1.50701 * 109.47167 * 240.00046 * 2 1 3 5 5 H 1.08000 * 119.99860 * 239.99990 * 4 2 1 6 6 C 1.37873 * 119.99896 * 59.99766 * 4 2 1 7 7 N 1.31522 * 120.00241 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99899 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47196 * 90.00152 * 8 6 4 10 10 H 1.48501 * 109.46944 * 209.99721 * 8 6 4 11 11 H 1.48495 * 109.47218 * 330.00226 * 8 6 4 12 12 N 1.46899 * 109.47440 * 119.99871 * 2 1 3 13 13 C 1.46901 * 111.00335 * 205.72141 * 12 2 1 14 14 H 1.08998 * 109.61200 * 328.26954 * 13 12 2 15 15 C 1.53187 * 109.59626 * 88.46735 * 13 12 2 16 16 C 1.53090 * 109.21381 * 176.78605 * 15 13 12 17 17 O 1.42902 * 109.41255 * 302.42238 * 16 15 13 18 18 C 1.42903 * 114.09937 * 61.15943 * 17 16 15 19 19 H 1.08993 * 109.48221 * 58.82364 * 18 17 16 20 20 C 1.53001 * 109.49184 * 178.85397 * 18 17 16 21 21 F 1.39903 * 109.47169 * 179.97438 * 20 18 17 22 22 F 1.39898 * 109.47074 * 299.94431 * 20 18 17 23 23 F 1.39899 * 109.47181 * 59.95105 * 20 18 17 24 24 C 1.53101 * 109.41588 * 298.83989 * 18 17 16 25 25 H 1.09000 * 109.47243 * 59.51301 * 1 2 3 26 26 H 1.09000 * 109.46956 * 179.51659 * 1 2 3 27 27 H 1.09004 * 109.46944 * 299.51098 * 1 2 3 28 28 H 0.96998 * 120.00036 * 180.02562 * 7 6 4 29 29 H 1.00902 * 111.00117 * 81.76439 * 12 2 1 30 30 H 1.09000 * 109.46803 * 56.87595 * 15 13 12 31 31 H 1.09004 * 109.52413 * 296.71771 * 15 13 12 32 32 H 1.08995 * 109.47966 * 182.44135 * 16 15 13 33 33 H 1.08997 * 109.49288 * 62.40811 * 16 15 13 34 34 H 1.08999 * 109.52498 * 177.51084 * 24 18 17 35 35 H 1.08997 * 109.52357 * 297.64180 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4864 -0.1414 -5.1123 11 1 3.6292 -1.7584 -3.7122 12 7 2.0198 -0.6924 1.1994 13 6 3.3601 -0.2192 1.5702 14 1 3.9090 0.0653 0.6725 15 6 3.2384 0.9917 2.5004 16 6 4.6368 1.4279 2.9453 17 8 5.2932 0.3340 3.5890 18 6 5.4787 -0.8094 2.7521 19 1 6.0680 -0.5292 1.8791 20 6 6.2124 -1.9008 3.5341 21 9 6.3933 -3.0202 2.7145 22 9 7.4594 -1.4199 3.9475 23 9 5.4561 -2.2601 4.6548 24 6 4.1140 -1.3356 2.2995 25 1 -0.3634 0.5214 -0.8856 26 1 -0.3633 -1.0276 -0.0087 27 1 -0.3633 0.5062 0.8944 28 1 0.7088 1.1614 -3.4844 29 1 2.0131 -1.6928 1.0675 30 1 2.6461 0.7204 3.3743 31 1 2.7528 1.8110 1.9702 32 1 4.5529 2.2622 3.6416 33 1 5.2152 1.7376 2.0749 34 1 4.2547 -2.1806 1.6255 35 1 3.5400 -1.6549 3.1692 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309388471.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:52 Heat of formation + Delta-G solvation = -210.420493 kcal Electronic energy + Delta-G solvation = -21533.352677 eV Core-core repulsion = 17729.834645 eV Total energy + Delta-G solvation = -3803.518032 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -50.11021 -47.64569 -47.56469 -39.50288 -36.16148 -33.36092 -32.03128 -31.07953 -28.08119 -26.12915 -25.13394 -23.59056 -22.43667 -20.12382 -20.01533 -18.54811 -18.26959 -17.85665 -16.63057 -16.03185 -15.52243 -15.00918 -14.64227 -14.55216 -14.41322 -14.23765 -14.02489 -13.85933 -13.73591 -13.69805 -13.15547 -12.83873 -12.35011 -12.01285 -11.55476 -11.41842 -11.31849 -11.06310 -10.92041 -10.61072 -10.53835 -10.24298 -10.09694 -10.00503 -9.55090 -9.17032 -8.48326 -7.43390 -6.08404 -4.21313 2.48241 3.21475 3.29099 3.31011 3.33139 3.76747 3.97366 4.32610 4.48742 4.71705 4.87666 4.97066 5.14282 5.19508 5.24419 5.46336 5.54241 5.86942 5.90153 5.98932 6.17139 6.38568 6.64063 6.81616 6.89974 7.08366 7.22969 7.41827 7.66548 7.98384 8.06145 8.21407 8.53307 8.90558 9.47226 10.92874 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.023972 B = 0.005380 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.747325 B = 5203.209433 C = 5750.681187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.208 3.792 3 H 0.033 0.967 4 C -0.548 4.548 5 H 0.053 0.947 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.889 3.111 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.684 5.684 13 C 0.097 3.903 14 H 0.055 0.945 15 C -0.145 4.145 16 C 0.065 3.935 17 O -0.369 6.369 18 C 0.054 3.946 19 H 0.101 0.899 20 C 0.465 3.535 21 F -0.176 7.176 22 F -0.180 7.180 23 F -0.175 7.175 24 C -0.155 4.155 25 H 0.081 0.919 26 H 0.024 0.976 27 H 0.013 0.987 28 H 0.262 0.738 29 H 0.331 0.669 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.660 -1.572 10.367 13.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.101 3.899 3 H 0.051 0.949 4 C -0.587 4.587 5 H 0.071 0.929 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.717 3.283 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.314 5.314 13 C -0.014 4.014 14 H 0.073 0.927 15 C -0.183 4.183 16 C -0.011 4.011 17 O -0.288 6.288 18 C -0.006 4.006 19 H 0.118 0.882 20 C 0.410 3.590 21 F -0.157 7.157 22 F -0.161 7.161 23 F -0.156 7.156 24 C -0.193 4.193 25 H 0.100 0.900 26 H 0.044 0.956 27 H 0.032 0.968 28 H 0.072 0.928 29 H 0.148 0.852 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.310 -1.033 10.864 13.717 hybrid contribution 0.880 -1.087 -1.860 2.327 sum 9.191 -2.120 9.004 13.040 Atomic orbital electron populations 1.21683 0.97692 0.99126 0.99844 1.19192 0.92455 0.94004 0.84274 0.94949 1.21835 1.32096 1.12857 0.91928 0.92856 1.24930 0.94765 0.94802 0.98973 1.69882 1.36225 1.22630 1.23575 0.86649 0.79258 0.79547 0.82865 1.20563 1.21143 1.20041 1.60974 1.20530 1.09751 1.40170 1.21277 0.91371 0.92763 0.95987 0.92743 1.22258 0.96151 0.99277 1.00615 1.22776 0.92848 0.87639 0.97850 1.87871 1.79624 1.23225 1.38081 1.23081 0.98143 0.86471 0.92950 0.88159 1.20235 0.77678 0.82678 0.78387 1.93201 1.95413 1.54557 1.72546 1.93187 1.44027 1.87923 1.91003 1.93190 1.75699 1.92658 1.54079 1.22480 0.93891 1.00289 1.02684 0.90046 0.95649 0.96789 0.92807 0.85166 0.90565 0.90228 0.88004 0.92619 0.89802 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.29 37.16 0.35 -2.63 16 2 C 0.21 4.96 2.40 -68.86 -0.17 4.79 16 3 H 0.03 0.84 7.42 -51.93 -0.39 0.46 16 4 C -0.55 -14.23 8.32 -34.44 -0.29 -14.51 16 5 H 0.05 1.37 7.73 -52.49 -0.41 0.96 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.89 -24.39 11.33 55.43 0.63 -23.77 16 8 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.68 -13.56 6.07 -100.75 -0.61 -14.18 16 13 C 0.10 1.64 2.36 -67.52 -0.16 1.48 16 14 H 0.05 1.04 7.65 -51.93 -0.40 0.64 16 15 C -0.14 -2.17 5.66 -26.59 -0.15 -2.32 16 16 C 0.07 0.82 6.84 37.20 0.25 1.07 16 17 O -0.37 -5.12 10.30 -35.23 -0.36 -5.48 16 18 C 0.05 0.72 2.62 -26.68 -0.07 0.65 16 19 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 20 C 0.46 6.12 2.85 37.16 0.11 6.23 16 21 F -0.18 -2.30 16.85 2.25 0.04 -2.26 16 22 F -0.18 -2.41 17.26 2.25 0.04 -2.37 16 23 F -0.17 -2.44 16.70 2.25 0.04 -2.40 16 24 C -0.16 -2.24 4.41 -26.59 -0.12 -2.36 16 25 H 0.08 2.12 6.08 -51.93 -0.32 1.80 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.33 6.50 7.99 -39.29 -0.31 6.18 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.08 1.27 7.75 -51.93 -0.40 0.87 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.19 7.88 -51.93 -0.41 0.78 16 35 H 0.09 1.30 7.74 -51.93 -0.40 0.89 16 LS Contribution 296.82 15.07 4.47 4.47 Total: -1.00 -27.08 296.82 -5.82 -32.90 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.70 Total: 3.39 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -0.34 Total: -5.89 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.02 Total: -37.94 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.36 Total: -5.48 kcal Atomic # 9 Polarization: -7.15 SS G_CDS: 0.11 Total: -7.04 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.08 -5.82 -32.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309388471.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.517 kcal (2) G-P(sol) polarization free energy of solvation -27.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds