Wall clock time and date at job start Mon Mar 30 2020 06:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47287 * 2 1 4 4 C 1.50701 * 109.47167 * 240.00046 * 2 1 3 5 5 H 1.08000 * 119.99860 * 239.99990 * 4 2 1 6 6 C 1.37873 * 119.99896 * 59.99766 * 4 2 1 7 7 N 1.31522 * 120.00241 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99899 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47196 * 90.00152 * 8 6 4 10 10 H 1.48501 * 109.46944 * 209.99721 * 8 6 4 11 11 H 1.48495 * 109.47218 * 330.00226 * 8 6 4 12 12 N 1.46899 * 109.47440 * 119.99871 * 2 1 3 13 13 C 1.46901 * 111.00335 * 205.72141 * 12 2 1 14 14 H 1.08998 * 109.61200 * 328.26954 * 13 12 2 15 15 C 1.53187 * 109.59626 * 88.46735 * 13 12 2 16 16 C 1.53090 * 109.21381 * 176.78605 * 15 13 12 17 17 O 1.42902 * 109.41255 * 302.42238 * 16 15 13 18 18 C 1.42903 * 114.09937 * 61.15943 * 17 16 15 19 19 H 1.08993 * 109.48221 * 58.82364 * 18 17 16 20 20 C 1.53001 * 109.49184 * 178.85397 * 18 17 16 21 21 F 1.39903 * 109.47169 * 179.97438 * 20 18 17 22 22 F 1.39898 * 109.47074 * 299.94431 * 20 18 17 23 23 F 1.39899 * 109.47181 * 59.95105 * 20 18 17 24 24 C 1.53101 * 109.41588 * 298.83989 * 18 17 16 25 25 H 1.09000 * 109.47243 * 59.51301 * 1 2 3 26 26 H 1.09000 * 109.46956 * 179.51659 * 1 2 3 27 27 H 1.09004 * 109.46944 * 299.51098 * 1 2 3 28 28 H 0.96998 * 120.00036 * 180.02562 * 7 6 4 29 29 H 1.00902 * 111.00117 * 81.76439 * 12 2 1 30 30 H 1.09000 * 109.46803 * 56.87595 * 15 13 12 31 31 H 1.09004 * 109.52413 * 296.71771 * 15 13 12 32 32 H 1.08995 * 109.47966 * 182.44135 * 16 15 13 33 33 H 1.08997 * 109.49288 * 62.40811 * 16 15 13 34 34 H 1.08999 * 109.52498 * 177.51084 * 24 18 17 35 35 H 1.08997 * 109.52357 * 297.64180 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4864 -0.1414 -5.1123 11 1 3.6292 -1.7584 -3.7122 12 7 2.0198 -0.6924 1.1994 13 6 3.3601 -0.2192 1.5702 14 1 3.9090 0.0653 0.6725 15 6 3.2384 0.9917 2.5004 16 6 4.6368 1.4279 2.9453 17 8 5.2932 0.3340 3.5890 18 6 5.4787 -0.8094 2.7521 19 1 6.0680 -0.5292 1.8791 20 6 6.2124 -1.9008 3.5341 21 9 6.3933 -3.0202 2.7145 22 9 7.4594 -1.4199 3.9475 23 9 5.4561 -2.2601 4.6548 24 6 4.1140 -1.3356 2.2995 25 1 -0.3634 0.5214 -0.8856 26 1 -0.3633 -1.0276 -0.0087 27 1 -0.3633 0.5062 0.8944 28 1 0.7088 1.1614 -3.4844 29 1 2.0131 -1.6928 1.0675 30 1 2.6461 0.7204 3.3743 31 1 2.7528 1.8110 1.9702 32 1 4.5529 2.2622 3.6416 33 1 5.2152 1.7376 2.0749 34 1 4.2547 -2.1806 1.6255 35 1 3.5400 -1.6549 3.1692 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309388471.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:50 Heat of formation + Delta-G solvation = -227.261471 kcal Electronic energy + Delta-G solvation = -21534.082957 eV Core-core repulsion = 17729.834645 eV Total energy + Delta-G solvation = -3804.248311 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 2.90 seconds Orbital eigenvalues (eV) -51.16449 -48.69141 -48.63067 -40.66865 -37.75385 -35.07131 -33.20939 -32.72559 -29.65001 -27.38329 -27.15992 -24.76670 -23.62160 -21.91971 -21.29439 -19.60596 -19.37184 -18.95722 -18.57620 -17.12943 -16.80949 -16.64994 -16.13327 -15.77579 -15.46891 -15.38169 -15.33442 -15.07635 -14.80220 -14.79282 -14.56154 -14.39489 -14.01872 -13.30714 -13.15192 -13.09864 -12.84461 -12.53961 -12.45804 -12.32179 -12.12500 -12.07170 -11.60392 -11.40231 -11.09348 -10.79533 -10.51716 -9.13820 -8.08634 -6.29788 1.38212 1.40758 1.42841 1.48573 2.28135 2.39141 2.68652 2.90821 3.13694 3.43318 3.48042 3.71217 3.84802 3.97887 4.03230 4.33152 4.42274 4.54791 4.70976 4.77154 4.86318 4.98773 5.10383 5.16047 5.24643 5.39366 5.48954 5.67050 5.83174 6.05414 6.14670 6.34618 6.77760 6.97906 7.42436 8.89693 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.023972 B = 0.005380 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.747325 B = 5203.209433 C = 5750.681187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.215 3.785 3 H 0.007 0.993 4 C -0.558 4.558 5 H 0.053 0.947 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.949 3.051 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.680 5.680 13 C 0.095 3.905 14 H 0.033 0.967 15 C -0.140 4.140 16 C 0.069 3.931 17 O -0.375 6.375 18 C 0.056 3.944 19 H 0.115 0.885 20 C 0.470 3.530 21 F -0.175 7.175 22 F -0.180 7.180 23 F -0.179 7.179 24 C -0.146 4.146 25 H 0.056 0.944 26 H 0.025 0.975 27 H 0.027 0.973 28 H 0.262 0.738 29 H 0.333 0.667 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.128 0.872 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.702 -2.044 10.811 14.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.107 3.893 3 H 0.025 0.975 4 C -0.597 4.597 5 H 0.071 0.929 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.775 3.225 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.195 1.195 12 N -0.309 5.309 13 C -0.016 4.016 14 H 0.051 0.949 15 C -0.178 4.178 16 C -0.007 4.007 17 O -0.294 6.294 18 C -0.005 4.005 19 H 0.132 0.868 20 C 0.415 3.585 21 F -0.156 7.156 22 F -0.161 7.161 23 F -0.161 7.161 24 C -0.184 4.184 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.150 0.850 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.146 0.854 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.363 -1.512 11.325 14.772 hybrid contribution 0.550 -0.931 -1.962 2.240 sum 9.912 -2.443 9.363 13.852 Atomic orbital electron populations 1.21542 0.97813 0.98846 0.99280 1.18953 0.92359 0.92790 0.85230 0.97534 1.22135 1.31870 1.12827 0.92913 0.92902 1.25649 0.95052 0.95492 1.01723 1.70002 1.37195 1.23806 1.24102 0.85701 0.78835 0.78430 0.79532 1.20294 1.21010 1.19463 1.60908 1.22540 1.09570 1.37913 1.21332 0.89868 0.94506 0.95887 0.94879 1.22195 0.97956 0.97880 0.99782 1.22857 0.91026 0.87838 0.98937 1.87877 1.79560 1.23490 1.38463 1.23086 0.97492 0.86441 0.93449 0.86755 1.20140 0.77585 0.82561 0.78176 1.93207 1.95401 1.54522 1.72480 1.93189 1.43983 1.87928 1.90993 1.93184 1.75832 1.92701 1.54369 1.22349 0.94388 0.99334 1.02377 0.92497 0.95612 0.95433 0.92843 0.85014 0.90678 0.91568 0.85377 0.91783 0.89507 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 9.29 71.98 0.67 -4.90 16 2 C 0.22 10.32 2.40 44.17 0.11 10.43 16 3 H 0.01 0.35 7.42 -2.39 -0.02 0.34 16 4 C -0.56 -28.98 8.32 25.60 0.21 -28.76 16 5 H 0.05 2.69 7.73 -2.91 -0.02 2.67 16 6 C 0.02 1.12 5.30 84.65 0.45 1.57 16 7 N -0.91 -50.74 11.33 21.45 0.24 -50.50 16 8 Si 0.95 42.01 29.54 68.60 2.03 44.04 16 9 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 12 N -0.68 -26.70 6.07 -472.68 -2.87 -29.57 16 13 C 0.09 3.15 2.36 45.04 0.11 3.25 16 14 H 0.03 1.25 7.65 -2.39 -0.02 1.24 16 15 C -0.14 -4.05 5.66 30.69 0.17 -3.88 16 16 C 0.07 1.59 6.84 72.01 0.49 2.08 16 17 O -0.37 -9.51 10.30 -148.98 -1.53 -11.04 16 18 C 0.06 1.36 2.62 30.63 0.08 1.44 16 19 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 20 C 0.47 11.43 2.85 71.98 0.21 11.64 16 21 F -0.17 -4.23 16.85 44.97 0.76 -3.48 16 22 F -0.18 -4.43 17.26 44.97 0.78 -3.66 16 23 F -0.18 -4.68 16.70 44.97 0.75 -3.93 16 24 C -0.15 -4.01 4.41 30.69 0.14 -3.87 16 25 H 0.06 3.00 6.08 -2.39 -0.01 2.99 16 26 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 29 H 0.33 12.83 7.99 -89.69 -0.72 12.12 16 30 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.07 2.10 7.75 -2.38 -0.02 2.08 16 32 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 34 H 0.09 2.33 7.88 -2.39 -0.02 2.31 16 35 H 0.09 2.46 7.74 -2.39 -0.02 2.44 16 Total: -1.00 -56.38 296.82 3.17 -53.22 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.39 Total: 15.92 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 2.63 Total: -11.01 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -2.63 Total: -80.06 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -1.53 Total: -11.04 kcal Atomic # 9 Polarization: -13.35 SS G_CDS: 2.28 Total: -11.06 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -56.38 3.17 -53.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309388471.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.046 kcal (2) G-P(sol) polarization free energy of solvation -56.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.90 seconds