Wall clock time and date at job start Mon Mar 30 2020 06:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47575 * 2 1 4 4 C 1.50704 * 109.47437 * 239.99891 * 2 1 3 5 5 H 1.07991 * 120.00485 * 245.37813 * 4 2 1 6 6 C 1.37878 * 119.99530 * 65.37286 * 4 2 1 7 7 N 1.31514 * 119.99926 * 185.16741 * 6 4 2 8 8 Si 1.86804 * 119.99995 * 5.17415 * 6 4 2 9 9 H 1.48504 * 109.46880 * 269.99074 * 8 6 4 10 10 H 1.48498 * 109.47164 * 149.99677 * 8 6 4 11 11 H 1.48492 * 109.47398 * 29.99475 * 8 6 4 12 12 N 1.46908 * 109.47043 * 120.00288 * 2 1 3 13 13 C 1.46898 * 110.99799 * 274.99891 * 12 2 1 14 14 H 1.09001 * 109.54611 * 34.99703 * 13 12 2 15 15 C 1.53174 * 109.54340 * 274.81999 * 13 12 2 16 16 C 1.53091 * 109.16389 * 297.11545 * 15 13 12 17 17 O 1.42902 * 109.41771 * 302.38820 * 16 15 13 18 18 C 1.42906 * 114.09028 * 61.15630 * 17 16 15 19 19 H 1.09004 * 109.48093 * 58.83483 * 18 17 16 20 20 C 1.53002 * 109.47767 * 178.84878 * 18 17 16 21 21 F 1.39896 * 109.47425 * 59.99904 * 20 18 17 22 22 F 1.39895 * 109.47434 * 180.02562 * 20 18 17 23 23 F 1.39902 * 109.47002 * 300.00391 * 20 18 17 24 24 C 1.53180 * 109.54350 * 155.17505 * 13 12 2 25 25 H 1.09007 * 109.46922 * 294.97657 * 1 2 3 26 26 H 1.09006 * 109.46813 * 54.97326 * 1 2 3 27 27 H 1.08994 * 109.47232 * 174.97307 * 1 2 3 28 28 H 0.96993 * 119.99767 * 354.99913 * 7 6 4 29 29 H 1.00901 * 110.99525 * 38.95026 * 12 2 1 30 30 H 1.09004 * 109.52248 * 57.02100 * 15 13 12 31 31 H 1.09001 * 109.52511 * 177.20985 * 15 13 12 32 32 H 1.08998 * 109.47790 * 62.37686 * 16 15 13 33 33 H 1.09005 * 109.48136 * 182.39211 * 16 15 13 34 34 H 1.08997 * 109.52155 * 182.79220 * 24 13 12 35 35 H 1.08995 * 109.52078 * 302.98595 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5798 -1.6363 -1.1338 6 6 1.7931 -0.1783 -2.4797 7 7 2.1413 -0.8472 -3.5571 8 14 0.9743 1.4930 -2.6418 9 1 -0.4989 1.3181 -2.7074 10 1 1.4493 2.1588 -3.8812 11 1 1.3216 2.3305 -1.4658 12 7 2.0197 -0.6926 1.1995 13 6 2.0824 0.2225 2.3469 14 1 1.2581 0.9335 2.2919 15 6 3.4140 0.9793 2.3265 16 6 4.5628 -0.0207 2.4811 17 8 4.3936 -0.7547 3.6955 18 6 3.1877 -1.5195 3.7516 19 1 3.1680 -2.2284 2.9238 20 6 3.1280 -2.2814 5.0771 21 9 3.1529 -1.3717 6.1395 22 9 1.9478 -3.0306 5.1317 23 9 4.2292 -3.1392 5.1719 24 6 1.9814 -0.5796 3.6480 25 1 -0.3633 0.4340 0.9316 26 1 -0.3633 0.5899 -0.8416 27 1 -0.3633 -1.0236 -0.0900 28 1 2.6311 -1.6802 -3.4735 29 1 1.4494 -1.4980 1.4100 30 1 3.5173 1.5092 1.3796 31 1 3.4397 1.6936 3.1494 32 1 4.5611 -0.7098 1.6366 33 1 5.5109 0.5164 2.5100 34 1 1.9781 0.1034 4.4975 35 1 1.0611 -1.1636 3.6453 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309388477.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:02 Heat of formation + Delta-G solvation = -205.850359 kcal Electronic energy + Delta-G solvation = -21806.923026 eV Core-core repulsion = 18003.603170 eV Total energy + Delta-G solvation = -3803.319856 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -50.11379 -47.65117 -47.56783 -39.61439 -36.33118 -33.38301 -32.00370 -31.40514 -28.17680 -26.50644 -24.76256 -23.93967 -22.61019 -20.46190 -19.29633 -18.52879 -18.32881 -17.97763 -17.45155 -15.94671 -15.59540 -15.19426 -14.61414 -14.43799 -14.42507 -14.32235 -14.03024 -13.76364 -13.73947 -13.67982 -13.35206 -12.89763 -12.48612 -12.20646 -12.03559 -11.92366 -11.45491 -11.32722 -11.27287 -10.64640 -10.56024 -10.27614 -10.03964 -9.79429 -9.57335 -8.82009 -8.46452 -7.63927 -6.44156 -4.08767 2.51843 3.30563 3.35852 3.39398 3.51508 3.79961 3.99466 4.42800 4.50540 4.63438 4.85647 4.97779 5.01045 5.20068 5.26743 5.32220 5.57347 5.70898 5.83905 5.98648 6.06499 6.15304 6.16164 6.25057 6.33848 6.48688 6.69116 7.03275 7.05837 7.65133 8.11127 8.18379 8.41239 8.95020 9.60882 10.95496 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.032593 B = 0.005213 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.881691 B = 5369.560146 C = 5406.823970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.182 3.818 3 H 0.035 0.965 4 C -0.575 4.575 5 H 0.063 0.937 6 C 0.024 3.976 7 N -0.916 5.916 8 Si 1.055 2.945 9 H -0.286 1.286 10 H -0.290 1.290 11 H -0.282 1.282 12 N -0.671 5.671 13 C 0.083 3.917 14 H 0.050 0.950 15 C -0.143 4.143 16 C 0.072 3.928 17 O -0.372 6.372 18 C 0.059 3.941 19 H 0.112 0.888 20 C 0.461 3.539 21 F -0.179 7.179 22 F -0.178 7.178 23 F -0.178 7.178 24 C -0.152 4.152 25 H 0.023 0.977 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.267 0.733 29 H 0.330 0.670 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.612 1.151 16.108 16.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.074 3.926 3 H 0.052 0.948 4 C -0.613 4.613 5 H 0.081 0.919 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.886 3.114 9 H -0.213 1.213 10 H -0.216 1.216 11 H -0.209 1.209 12 N -0.302 5.302 13 C -0.027 4.027 14 H 0.068 0.932 15 C -0.181 4.181 16 C -0.003 4.003 17 O -0.291 6.291 18 C -0.001 4.001 19 H 0.129 0.871 20 C 0.407 3.593 21 F -0.160 7.160 22 F -0.159 7.159 23 F -0.160 7.160 24 C -0.190 4.190 25 H 0.042 0.958 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.148 0.852 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.837 2.309 15.006 15.206 hybrid contribution -0.694 -1.128 1.302 1.857 sum 0.143 1.182 16.308 16.352 Atomic orbital electron populations 1.22816 1.01426 1.01122 0.98666 1.19738 0.88749 0.95148 0.89012 0.94756 1.22015 1.38752 1.10355 0.90208 0.91899 1.25685 0.96869 1.03393 0.92069 1.70796 1.37100 1.16937 1.30247 0.83845 0.76159 0.75896 0.75513 1.21333 1.21648 1.20862 1.60839 1.57948 1.08650 1.02742 1.21490 0.97090 0.94670 0.89493 0.93213 1.22163 0.95165 0.98085 1.02671 1.22636 0.97866 0.93926 0.85884 1.87829 1.37266 1.63067 1.40982 1.23009 0.88871 0.95392 0.92792 0.87062 1.20398 0.73460 0.78134 0.87340 1.93171 1.96084 1.66810 1.59974 1.93185 1.48246 1.77695 1.96806 1.93194 1.54202 1.71838 1.96734 1.22438 0.97075 0.99324 1.00197 0.95777 0.93370 0.92919 0.92233 0.85208 0.89869 0.91692 0.90297 0.88833 0.89789 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.65 8.75 37.16 0.33 -3.32 16 2 C 0.18 3.97 1.96 -68.86 -0.13 3.83 16 3 H 0.03 0.78 5.63 -51.93 -0.29 0.49 16 4 C -0.57 -15.31 9.20 -34.44 -0.32 -15.63 16 5 H 0.06 1.84 8.04 -52.49 -0.42 1.42 16 6 C 0.02 0.67 5.43 -17.82 -0.10 0.57 16 7 N -0.92 -27.62 13.70 55.43 0.76 -26.86 16 8 Si 1.06 24.73 25.29 -169.99 -4.30 20.44 16 9 H -0.29 -6.43 6.81 56.52 0.38 -6.04 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.11 6.36 56.52 0.36 -5.75 16 12 N -0.67 -12.12 4.82 -100.76 -0.49 -12.61 16 13 C 0.08 1.24 2.64 -67.53 -0.18 1.07 16 14 H 0.05 0.76 7.10 -51.93 -0.37 0.39 16 15 C -0.14 -2.05 5.73 -26.59 -0.15 -2.20 16 16 C 0.07 1.03 6.68 37.20 0.25 1.28 16 17 O -0.37 -5.46 10.30 -35.23 -0.36 -5.83 16 18 C 0.06 0.80 2.46 -26.58 -0.07 0.73 16 19 H 0.11 1.55 7.75 -51.93 -0.40 1.15 16 20 C 0.46 6.06 2.85 37.16 0.11 6.16 16 21 F -0.18 -2.41 16.70 2.25 0.04 -2.37 16 22 F -0.18 -2.25 16.85 2.25 0.04 -2.21 16 23 F -0.18 -2.50 17.26 2.25 0.04 -2.46 16 24 C -0.15 -1.94 4.57 -26.49 -0.12 -2.06 16 25 H 0.02 0.41 7.38 -51.93 -0.38 0.03 16 26 H 0.05 1.01 4.40 -51.93 -0.23 0.78 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.27 8.07 8.72 -40.82 -0.36 7.71 16 29 H 0.33 5.70 8.07 -39.29 -0.32 5.38 16 30 H 0.08 1.31 7.42 -51.93 -0.39 0.92 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.28 7.75 -51.93 -0.40 0.88 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.08 1.00 7.74 -51.93 -0.40 0.60 16 35 H 0.08 0.97 7.82 -51.93 -0.41 0.57 16 LS Contribution 287.70 15.07 4.34 4.34 Total: -1.00 -28.50 287.70 -4.81 -33.32 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -4.49 Total: 3.80 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -0.39 Total: -9.56 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.27 Total: -39.47 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.36 Total: -5.83 kcal Atomic # 9 Polarization: -7.15 SS G_CDS: 0.11 Total: -7.04 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -4.30 Total: 20.44 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.50 -4.81 -33.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309388477.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.533 kcal (2) G-P(sol) polarization free energy of solvation -28.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds