Wall clock time and date at job start Mon Mar 30 2020 06:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47575 * 2 1 4 4 C 1.50704 * 109.47437 * 239.99891 * 2 1 3 5 5 H 1.07991 * 120.00485 * 245.37813 * 4 2 1 6 6 C 1.37878 * 119.99530 * 65.37286 * 4 2 1 7 7 N 1.31514 * 119.99926 * 185.16741 * 6 4 2 8 8 Si 1.86804 * 119.99995 * 5.17415 * 6 4 2 9 9 H 1.48504 * 109.46880 * 269.99074 * 8 6 4 10 10 H 1.48498 * 109.47164 * 149.99677 * 8 6 4 11 11 H 1.48492 * 109.47398 * 29.99475 * 8 6 4 12 12 N 1.46908 * 109.47043 * 120.00288 * 2 1 3 13 13 C 1.46898 * 110.99799 * 274.99891 * 12 2 1 14 14 H 1.09001 * 109.54611 * 34.99703 * 13 12 2 15 15 C 1.53174 * 109.54340 * 274.81999 * 13 12 2 16 16 C 1.53091 * 109.16389 * 297.11545 * 15 13 12 17 17 O 1.42902 * 109.41771 * 302.38820 * 16 15 13 18 18 C 1.42906 * 114.09028 * 61.15630 * 17 16 15 19 19 H 1.09004 * 109.48093 * 58.83483 * 18 17 16 20 20 C 1.53002 * 109.47767 * 178.84878 * 18 17 16 21 21 F 1.39896 * 109.47425 * 59.99904 * 20 18 17 22 22 F 1.39895 * 109.47434 * 180.02562 * 20 18 17 23 23 F 1.39902 * 109.47002 * 300.00391 * 20 18 17 24 24 C 1.53180 * 109.54350 * 155.17505 * 13 12 2 25 25 H 1.09007 * 109.46922 * 294.97657 * 1 2 3 26 26 H 1.09006 * 109.46813 * 54.97326 * 1 2 3 27 27 H 1.08994 * 109.47232 * 174.97307 * 1 2 3 28 28 H 0.96993 * 119.99767 * 354.99913 * 7 6 4 29 29 H 1.00901 * 110.99525 * 38.95026 * 12 2 1 30 30 H 1.09004 * 109.52248 * 57.02100 * 15 13 12 31 31 H 1.09001 * 109.52511 * 177.20985 * 15 13 12 32 32 H 1.08998 * 109.47790 * 62.37686 * 16 15 13 33 33 H 1.09005 * 109.48136 * 182.39211 * 16 15 13 34 34 H 1.08997 * 109.52155 * 182.79220 * 24 13 12 35 35 H 1.08995 * 109.52078 * 302.98595 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5798 -1.6363 -1.1338 6 6 1.7931 -0.1783 -2.4797 7 7 2.1413 -0.8472 -3.5571 8 14 0.9743 1.4930 -2.6418 9 1 -0.4989 1.3181 -2.7074 10 1 1.4493 2.1588 -3.8812 11 1 1.3216 2.3305 -1.4658 12 7 2.0197 -0.6926 1.1995 13 6 2.0824 0.2225 2.3469 14 1 1.2581 0.9335 2.2919 15 6 3.4140 0.9793 2.3265 16 6 4.5628 -0.0207 2.4811 17 8 4.3936 -0.7547 3.6955 18 6 3.1877 -1.5195 3.7516 19 1 3.1680 -2.2284 2.9238 20 6 3.1280 -2.2814 5.0771 21 9 3.1529 -1.3717 6.1395 22 9 1.9478 -3.0306 5.1317 23 9 4.2292 -3.1392 5.1719 24 6 1.9814 -0.5796 3.6480 25 1 -0.3633 0.4340 0.9316 26 1 -0.3633 0.5899 -0.8416 27 1 -0.3633 -1.0236 -0.0900 28 1 2.6311 -1.6802 -3.4735 29 1 1.4494 -1.4980 1.4100 30 1 3.5173 1.5092 1.3796 31 1 3.4397 1.6936 3.1494 32 1 4.5611 -0.7098 1.6366 33 1 5.5109 0.5164 2.5100 34 1 1.9781 0.1034 4.4975 35 1 1.0611 -1.1636 3.6453 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309388477.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:56 Heat of formation + Delta-G solvation = -225.441642 kcal Electronic energy + Delta-G solvation = -21807.772568 eV Core-core repulsion = 18003.603170 eV Total energy + Delta-G solvation = -3804.169398 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -51.16721 -48.69391 -48.63593 -40.78194 -37.80323 -35.08711 -33.32862 -32.92206 -29.63209 -27.66481 -26.68204 -25.10527 -23.72149 -22.12225 -20.59713 -19.71391 -19.58702 -19.23073 -19.01864 -17.06901 -16.71986 -16.60635 -16.17690 -15.63353 -15.49996 -15.47237 -15.23757 -15.08535 -14.89505 -14.80065 -14.76813 -14.29496 -13.99472 -13.66512 -13.56616 -13.18812 -13.07186 -12.75736 -12.40655 -12.30747 -11.90463 -11.65694 -11.57099 -11.41870 -10.88497 -10.71906 -10.56628 -9.12172 -8.62388 -6.30263 1.43384 1.45188 1.53062 1.68592 2.32186 2.50117 2.73856 2.93650 3.15241 3.34035 3.49848 3.68822 3.89052 3.90868 4.08999 4.17394 4.51119 4.54497 4.58525 4.67271 4.69249 4.77447 4.85184 4.96391 5.04952 5.06285 5.21301 5.45198 5.86606 5.92152 6.11127 6.40190 6.69567 6.77776 7.49744 8.73148 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.032593 B = 0.005213 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.881691 B = 5369.560146 C = 5406.823970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.187 3.813 3 H 0.035 0.965 4 C -0.569 4.569 5 H 0.021 0.979 6 C -0.032 4.032 7 N -0.954 5.954 8 Si 1.093 2.907 9 H -0.268 1.268 10 H -0.297 1.297 11 H -0.249 1.249 12 N -0.680 5.680 13 C 0.082 3.918 14 H 0.059 0.941 15 C -0.142 4.142 16 C 0.075 3.925 17 O -0.379 6.379 18 C 0.057 3.943 19 H 0.103 0.897 20 C 0.467 3.533 21 F -0.178 7.178 22 F -0.173 7.173 23 F -0.185 7.185 24 C -0.144 4.144 25 H 0.060 0.940 26 H 0.041 0.959 27 H 0.045 0.955 28 H 0.250 0.750 29 H 0.335 0.665 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.550 2.858 18.295 18.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.077 3.923 3 H 0.053 0.947 4 C -0.608 4.608 5 H 0.039 0.961 6 C -0.228 4.228 7 N -0.592 5.592 8 Si 0.917 3.083 9 H -0.194 1.194 10 H -0.225 1.225 11 H -0.174 1.174 12 N -0.311 5.311 13 C -0.028 4.028 14 H 0.077 0.923 15 C -0.180 4.180 16 C -0.001 4.001 17 O -0.298 6.298 18 C -0.003 4.003 19 H 0.121 0.879 20 C 0.413 3.587 21 F -0.159 7.159 22 F -0.155 7.155 23 F -0.166 7.166 24 C -0.182 4.182 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.153 0.847 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.131 0.869 34 H 0.119 0.881 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.326 3.999 17.240 17.701 hybrid contribution -0.257 -1.759 0.698 1.909 sum -0.582 2.241 17.938 18.087 Atomic orbital electron populations 1.22679 0.99518 1.01058 1.00305 1.19484 0.89984 0.94411 0.88390 0.94719 1.22271 1.37039 1.08767 0.92697 0.96110 1.27108 0.97308 1.06366 0.91988 1.70935 1.39539 1.17093 1.31623 0.83405 0.76357 0.72186 0.76399 1.19364 1.22481 1.17367 1.60631 1.58043 1.09332 1.03087 1.21572 0.97691 0.94477 0.89037 0.92299 1.22173 0.94748 0.98249 1.02827 1.22605 0.99081 0.93467 0.84897 1.87824 1.37936 1.63195 1.40857 1.23049 0.89049 0.95468 0.92744 0.87944 1.20273 0.73389 0.77983 0.87100 1.93174 1.96083 1.66767 1.59920 1.93196 1.47917 1.77594 1.96776 1.93184 1.54637 1.72063 1.96748 1.22395 0.97100 0.99283 0.99382 0.92119 0.94047 0.93548 0.94149 0.84722 0.91371 0.89261 0.93052 0.86923 0.88118 0.88491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.58 8.75 71.98 0.63 -5.95 16 2 C 0.19 7.83 1.96 44.17 0.09 7.92 16 3 H 0.03 1.48 5.63 -2.39 -0.01 1.47 16 4 C -0.57 -30.79 9.20 25.60 0.24 -30.56 16 5 H 0.02 1.26 8.04 -2.92 -0.02 1.24 16 6 C -0.03 -1.79 5.43 84.65 0.46 -1.33 16 7 N -0.95 -59.51 13.70 21.45 0.29 -59.22 16 8 Si 1.09 48.78 25.29 68.60 1.73 50.51 16 9 H -0.27 -11.11 6.81 99.48 0.68 -10.43 16 10 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.25 -9.72 6.36 99.48 0.63 -9.09 16 12 N -0.68 -23.56 4.82 -472.69 -2.28 -25.84 16 13 C 0.08 2.21 2.64 45.03 0.12 2.33 16 14 H 0.06 1.53 7.10 -2.39 -0.02 1.51 16 15 C -0.14 -3.71 5.73 30.68 0.18 -3.53 16 16 C 0.08 2.03 6.68 72.01 0.48 2.51 16 17 O -0.38 -10.42 10.30 -148.98 -1.53 -11.95 16 18 C 0.06 1.42 2.46 30.69 0.08 1.50 16 19 H 0.10 2.76 7.75 -2.39 -0.02 2.74 16 20 C 0.47 11.32 2.85 71.98 0.21 11.53 16 21 F -0.18 -4.33 16.70 44.97 0.75 -3.58 16 22 F -0.17 -4.01 16.85 44.97 0.76 -3.25 16 23 F -0.18 -4.93 17.26 44.97 0.78 -4.16 16 24 C -0.14 -3.19 4.57 30.75 0.14 -3.05 16 25 H 0.06 1.82 7.38 -2.38 -0.02 1.80 16 26 H 0.04 1.60 4.40 -2.38 -0.01 1.58 16 27 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.25 15.89 8.72 -92.71 -0.81 15.08 16 29 H 0.33 11.06 8.07 -89.69 -0.72 10.33 16 30 H 0.07 2.00 7.42 -2.38 -0.02 1.99 16 31 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.05 1.67 7.75 -2.39 -0.02 1.65 16 33 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 34 H 0.10 1.97 7.74 -2.39 -0.02 1.95 16 35 H 0.10 1.91 7.82 -2.39 -0.02 1.89 16 Total: -1.00 -62.43 287.70 3.36 -59.06 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.25 Total: 17.04 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 2.61 Total: -18.63 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -1.99 Total: -85.05 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -1.53 Total: -11.95 kcal Atomic # 9 Polarization: -13.27 SS G_CDS: 2.29 Total: -10.98 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 1.73 Total: 50.51 kcal Total: -62.43 3.36 -59.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309388477.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.377 kcal (2) G-P(sol) polarization free energy of solvation -62.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds