Wall clock time and date at job start Mon Mar 30 2020 04:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99888 * 2 1 4 4 H 1.48499 * 109.46892 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47110 * 299.99829 * 3 2 1 6 6 H 1.48494 * 109.47039 * 60.00176 * 3 2 1 7 7 C 1.37870 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00033 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00062 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47267 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47438 * 179.97438 * 10 9 7 12 12 C 1.46900 * 111.00436 * 185.79410 * 11 10 9 13 13 C 1.52997 * 109.54205 * 294.91748 * 12 11 10 14 14 F 1.39899 * 109.47051 * 305.95234 * 13 12 11 15 15 F 1.39901 * 109.47513 * 65.95252 * 13 12 11 16 16 F 1.39903 * 109.47011 * 185.95613 * 13 12 11 17 17 C 1.53207 * 109.53848 * 55.17439 * 12 11 10 18 18 C 1.53089 * 109.14636 * 62.89638 * 17 12 11 19 19 O 1.42901 * 109.42753 * 57.60560 * 18 17 12 20 20 C 1.42905 * 114.09697 * 298.83298 * 19 18 17 21 21 C 1.53097 * 109.41331 * 61.15609 * 20 19 18 22 22 H 0.97001 * 120.00010 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47544 * 59.99978 * 9 7 2 24 24 H 1.09001 * 109.47361 * 299.99824 * 9 7 2 25 25 H 1.09009 * 109.46982 * 60.00213 * 10 9 7 26 26 H 1.08995 * 109.47532 * 299.99984 * 10 9 7 27 27 H 1.00905 * 110.99631 * 61.84072 * 11 10 9 28 28 H 1.08998 * 109.53908 * 302.99374 * 17 12 11 29 29 H 1.08999 * 109.51911 * 182.79251 * 17 12 11 30 30 H 1.09001 * 109.48444 * 297.61513 * 18 17 12 31 31 H 1.09007 * 109.48081 * 177.59024 * 18 17 12 32 32 H 1.08998 * 109.47935 * 181.13950 * 20 19 18 33 33 H 1.08996 * 109.48162 * 301.16442 * 20 19 18 34 34 H 1.09000 * 109.52287 * 62.29673 * 21 20 19 35 35 H 1.09001 * 109.51820 * 182.42487 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0027 11 7 1.5108 -4.9342 -0.0033 12 6 2.4292 -6.0725 0.1342 13 6 3.3342 -6.1514 -1.0969 14 9 2.5470 -6.1856 -2.2529 15 9 4.1694 -5.0297 -1.1345 16 9 4.1136 -7.3112 -1.0291 17 6 3.2858 -5.8908 1.3913 18 6 2.3765 -5.8911 2.6229 19 8 1.6331 -7.1108 2.6646 20 6 0.7783 -7.3118 1.5371 21 6 1.6232 -7.3688 0.2617 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5563 -0.8919 24 1 0.6240 -2.5575 0.8880 25 1 2.8719 -3.6051 0.8874 26 1 2.8719 -3.6036 -0.8926 27 1 0.9447 -5.0246 -0.8337 28 1 3.8209 -4.9429 1.3339 29 1 4.0009 -6.7100 1.4663 30 1 1.6883 -5.0477 2.5669 31 1 2.9844 -5.8050 3.5236 32 1 0.2350 -8.2494 1.6555 33 1 0.0691 -6.4871 1.4670 34 1 2.3047 -8.2178 0.3138 35 1 0.9695 -7.4790 -0.6036 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309559773.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:39 Heat of formation + Delta-G solvation = -206.264097 kcal Electronic energy + Delta-G solvation = -22168.380977 eV Core-core repulsion = 18365.043180 eV Total energy + Delta-G solvation = -3803.337797 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.06272 -47.52725 -47.51442 -39.69855 -36.28778 -33.53915 -31.82814 -31.13147 -28.68685 -26.90754 -24.39368 -23.64678 -22.94639 -20.68051 -19.65416 -18.29303 -18.22122 -17.94619 -16.43490 -15.98476 -15.82481 -15.07449 -14.75357 -14.62676 -14.54699 -14.35684 -14.00204 -13.92200 -13.68999 -13.65225 -13.06582 -12.81770 -12.56018 -12.32936 -12.24899 -11.94379 -11.42349 -11.17205 -11.02552 -10.68173 -10.58104 -10.38919 -10.09716 -9.56375 -9.48878 -9.19903 -8.43445 -8.23284 -6.05097 -4.07907 2.81223 3.28451 3.36155 3.40046 3.78908 3.92639 3.96581 4.05276 4.34527 4.47405 4.68926 4.74340 4.99461 5.28915 5.31468 5.33452 5.46449 5.57374 5.69261 5.73018 5.94405 5.95558 6.07512 6.19837 6.23443 6.83807 7.06899 7.26593 7.41789 7.64324 7.77316 7.97387 8.35280 8.99027 9.56540 11.06240 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.023002 B = 0.005969 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.968748 B = 4689.639981 C = 5234.663985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.030 3.970 10 C 0.040 3.960 11 N -0.659 5.659 12 C 0.080 3.920 13 C 0.415 3.585 14 F -0.186 7.186 15 F -0.176 7.176 16 F -0.190 7.190 17 C -0.149 4.149 18 C 0.073 3.927 19 O -0.385 6.385 20 C 0.074 3.926 21 C -0.145 4.145 22 H 0.260 0.740 23 H 0.014 0.986 24 H 0.025 0.975 25 H 0.070 0.930 26 H 0.039 0.961 27 H 0.349 0.651 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.221 -15.318 1.185 15.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.007 4.007 10 C -0.087 4.087 11 N -0.290 5.290 12 C -0.015 4.015 13 C 0.358 3.642 14 F -0.167 7.167 15 F -0.157 7.157 16 F -0.171 7.171 17 C -0.187 4.187 18 C -0.004 4.004 19 O -0.304 6.304 20 C -0.003 4.003 21 C -0.183 4.183 22 H 0.070 0.930 23 H 0.033 0.967 24 H 0.044 0.956 25 H 0.088 0.912 26 H 0.057 0.943 27 H 0.169 0.831 28 H 0.112 0.888 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.939 -15.278 1.982 15.901 hybrid contribution 1.089 1.168 -1.648 2.294 sum 5.027 -14.110 0.334 14.983 Atomic orbital electron populations 1.69975 1.06026 1.26575 1.50548 1.24986 0.94836 0.99239 0.95193 0.86534 0.80112 0.83732 0.77623 1.19734 1.20999 1.20938 1.21168 0.93050 0.90829 1.51027 0.92636 1.19026 0.93792 0.90095 0.97819 1.22734 0.97801 0.87559 1.00606 1.60859 1.21671 1.01077 1.45380 1.22373 0.92192 0.95995 0.90944 1.22380 0.80959 0.73416 0.87454 1.93142 1.74179 1.96150 1.53268 1.93170 1.73737 1.51975 1.96813 1.93130 1.77016 1.50440 1.96532 1.22375 0.98311 1.04339 0.93689 1.22461 0.94004 0.87722 0.96207 1.87867 1.58689 1.40843 1.43010 1.22427 0.91880 1.02221 0.83803 1.22273 1.00086 0.94750 1.01169 0.92990 0.96725 0.95615 0.91175 0.94305 0.83141 0.88819 0.90213 0.90730 0.88850 0.89029 0.91070 0.89869 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.03 0.75 5.28 -27.88 -0.15 0.60 16 10 C 0.04 0.79 4.47 -3.82 -0.02 0.77 16 11 N -0.66 -10.57 4.83 -99.76 -0.48 -11.05 16 12 C 0.08 1.10 0.25 -131.41 -0.03 1.07 16 13 C 0.41 6.12 2.23 37.16 0.08 6.21 16 14 F -0.19 -2.82 16.44 2.25 0.04 -2.79 16 15 F -0.18 -2.92 13.66 2.25 0.03 -2.89 16 16 F -0.19 -2.65 16.19 2.25 0.04 -2.61 16 17 C -0.15 -1.97 4.24 -26.58 -0.11 -2.08 16 18 C 0.07 0.95 6.68 37.20 0.25 1.20 16 19 O -0.39 -5.17 10.77 -35.23 -0.38 -5.55 16 20 C 0.07 0.85 6.68 37.21 0.25 1.10 16 21 C -0.14 -1.67 4.86 -26.59 -0.13 -1.79 16 22 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 23 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 1.35 5.84 -51.92 -0.30 1.05 16 26 H 0.04 0.80 5.78 -51.93 -0.30 0.50 16 27 H 0.35 5.51 8.20 -39.29 -0.32 5.18 16 28 H 0.09 1.31 5.70 -51.93 -0.30 1.02 16 29 H 0.08 0.96 7.90 -51.93 -0.41 0.55 16 30 H 0.07 1.11 7.75 -51.93 -0.40 0.71 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.90 7.75 -51.93 -0.40 0.50 16 34 H 0.08 0.91 7.58 -51.93 -0.39 0.51 16 35 H 0.08 0.87 8.05 -51.93 -0.42 0.45 16 LS Contribution 288.44 15.07 4.35 4.35 Total: -1.00 -29.40 288.44 -5.44 -34.85 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -4.48 Total: 1.06 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -0.27 Total: -6.12 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.25 Total: -36.71 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.38 Total: -5.55 kcal Atomic # 9 Polarization: -8.39 SS G_CDS: 0.10 Total: -8.29 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.40 -5.44 -34.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309559773.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.418 kcal (2) G-P(sol) polarization free energy of solvation -29.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds