Wall clock time and date at job start Mon Mar 30 2020 04:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99888 * 2 1 4 4 H 1.48499 * 109.46892 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47110 * 299.99829 * 3 2 1 6 6 H 1.48494 * 109.47039 * 60.00176 * 3 2 1 7 7 C 1.37870 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00033 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00062 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47267 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47438 * 179.97438 * 10 9 7 12 12 C 1.46900 * 111.00436 * 185.79410 * 11 10 9 13 13 C 1.52997 * 109.54205 * 294.91748 * 12 11 10 14 14 F 1.39899 * 109.47051 * 305.95234 * 13 12 11 15 15 F 1.39901 * 109.47513 * 65.95252 * 13 12 11 16 16 F 1.39903 * 109.47011 * 185.95613 * 13 12 11 17 17 C 1.53207 * 109.53848 * 55.17439 * 12 11 10 18 18 C 1.53089 * 109.14636 * 62.89638 * 17 12 11 19 19 O 1.42901 * 109.42753 * 57.60560 * 18 17 12 20 20 C 1.42905 * 114.09697 * 298.83298 * 19 18 17 21 21 C 1.53097 * 109.41331 * 61.15609 * 20 19 18 22 22 H 0.97001 * 120.00010 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47544 * 59.99978 * 9 7 2 24 24 H 1.09001 * 109.47361 * 299.99824 * 9 7 2 25 25 H 1.09009 * 109.46982 * 60.00213 * 10 9 7 26 26 H 1.08995 * 109.47532 * 299.99984 * 10 9 7 27 27 H 1.00905 * 110.99631 * 61.84072 * 11 10 9 28 28 H 1.08998 * 109.53908 * 302.99374 * 17 12 11 29 29 H 1.08999 * 109.51911 * 182.79251 * 17 12 11 30 30 H 1.09001 * 109.48444 * 297.61513 * 18 17 12 31 31 H 1.09007 * 109.48081 * 177.59024 * 18 17 12 32 32 H 1.08998 * 109.47935 * 181.13950 * 20 19 18 33 33 H 1.08996 * 109.48162 * 301.16442 * 20 19 18 34 34 H 1.09000 * 109.52287 * 62.29673 * 21 20 19 35 35 H 1.09001 * 109.51820 * 182.42487 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0027 11 7 1.5108 -4.9342 -0.0033 12 6 2.4292 -6.0725 0.1342 13 6 3.3342 -6.1514 -1.0969 14 9 2.5470 -6.1856 -2.2529 15 9 4.1694 -5.0297 -1.1345 16 9 4.1136 -7.3112 -1.0291 17 6 3.2858 -5.8908 1.3913 18 6 2.3765 -5.8911 2.6229 19 8 1.6331 -7.1108 2.6646 20 6 0.7783 -7.3118 1.5371 21 6 1.6232 -7.3688 0.2617 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5563 -0.8919 24 1 0.6240 -2.5575 0.8880 25 1 2.8719 -3.6051 0.8874 26 1 2.8719 -3.6036 -0.8926 27 1 0.9447 -5.0246 -0.8337 28 1 3.8209 -4.9429 1.3339 29 1 4.0009 -6.7100 1.4663 30 1 1.6883 -5.0477 2.5669 31 1 2.9844 -5.8050 3.5236 32 1 0.2350 -8.2494 1.6555 33 1 0.0691 -6.4871 1.4670 34 1 2.3047 -8.2178 0.3138 35 1 0.9695 -7.4790 -0.6036 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309559773.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:38 Heat of formation + Delta-G solvation = -225.606575 kcal Electronic energy + Delta-G solvation = -22169.219729 eV Core-core repulsion = 18365.043180 eV Total energy + Delta-G solvation = -3804.176550 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.26515 -48.75658 -48.69497 -40.78791 -37.56003 -35.41602 -33.43393 -32.17549 -30.34522 -28.15640 -26.13445 -24.83107 -24.07048 -22.45041 -20.79315 -19.48496 -19.42225 -19.13705 -18.46842 -17.21598 -16.85577 -16.53059 -16.26365 -15.91090 -15.75610 -15.67163 -15.22292 -15.13509 -14.95379 -14.85826 -14.56248 -14.32530 -14.00521 -13.59702 -13.36870 -13.29811 -13.04657 -12.89306 -12.44047 -12.37375 -12.05976 -11.69404 -11.42395 -11.36984 -11.22087 -10.64116 -10.54520 -9.65041 -8.21341 -6.31982 1.39638 1.40388 1.53071 1.63811 2.38333 2.61352 2.76803 2.84996 3.00621 3.12900 3.21610 3.57563 3.65436 4.00099 4.26751 4.31685 4.42664 4.49284 4.55228 4.63291 4.70092 4.79912 4.93949 5.02262 5.08344 5.13869 5.40982 5.60645 5.68137 5.91975 6.08751 6.27287 6.27760 6.84779 7.37365 8.90720 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.023002 B = 0.005969 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.968748 B = 4689.639981 C = 5234.663985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.058 0.942 9 C 0.038 3.962 10 C 0.062 3.938 11 N -0.657 5.657 12 C 0.081 3.919 13 C 0.414 3.586 14 F -0.189 7.189 15 F -0.188 7.188 16 F -0.182 7.182 17 C -0.148 4.148 18 C 0.075 3.925 19 O -0.393 6.393 20 C 0.071 3.929 21 C -0.139 4.139 22 H 0.264 0.736 23 H -0.010 1.010 24 H 0.000 1.000 25 H 0.075 0.925 26 H 0.032 0.968 27 H 0.350 0.650 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.050 0.950 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.231 -16.174 1.419 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.787 3.213 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.077 0.923 9 C 0.000 4.000 10 C -0.066 4.066 11 N -0.287 5.287 12 C -0.014 4.014 13 C 0.358 3.642 14 F -0.170 7.170 15 F -0.170 7.170 16 F -0.163 7.163 17 C -0.186 4.186 18 C -0.001 4.001 19 O -0.312 6.312 20 C -0.005 4.005 21 C -0.177 4.177 22 H 0.072 0.928 23 H 0.008 0.992 24 H 0.019 0.981 25 H 0.093 0.907 26 H 0.050 0.950 27 H 0.170 0.830 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.069 0.931 31 H 0.130 0.870 32 H 0.137 0.863 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.955 -16.155 2.214 17.042 hybrid contribution 0.748 1.366 -1.730 2.328 sum 5.702 -14.789 0.483 15.858 Atomic orbital electron populations 1.70098 1.07673 1.27690 1.51452 1.25897 0.95714 1.03131 0.94691 0.85443 0.79075 0.79003 0.77798 1.18729 1.20513 1.20243 1.21598 0.93463 0.92223 1.50787 0.92338 1.18846 0.94062 0.91769 0.95288 1.22289 0.96224 0.87571 1.00509 1.60712 1.21921 1.00546 1.45555 1.22524 0.92083 0.96001 0.90797 1.22472 0.80938 0.73261 0.87566 1.93138 1.74221 1.96147 1.53533 1.93145 1.74151 1.52811 1.96870 1.93143 1.76827 1.49842 1.96497 1.22395 0.98426 1.04483 0.93305 1.22436 0.93686 0.86975 0.97032 1.87864 1.58874 1.40587 1.43827 1.22567 0.91519 1.03061 0.83397 1.22310 1.00225 0.93537 1.01646 0.92759 0.99189 0.98137 0.90663 0.94964 0.82963 0.89851 0.88482 0.93125 0.86980 0.86287 0.92532 0.88419 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.86 13.29 21.44 0.28 -55.58 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.96 43.95 29.54 68.60 2.03 45.97 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.54 -30.40 9.11 25.60 0.23 -30.16 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.04 1.94 5.28 29.85 0.16 2.10 16 10 C 0.06 2.45 4.47 86.30 0.39 2.84 16 11 N -0.66 -20.93 4.83 -469.54 -2.27 -23.20 16 12 C 0.08 2.10 0.25 3.65 0.00 2.10 16 13 C 0.41 11.60 2.23 71.98 0.16 11.76 16 14 F -0.19 -5.49 16.44 44.97 0.74 -4.75 16 15 F -0.19 -6.09 13.66 44.97 0.61 -5.48 16 16 F -0.18 -4.66 16.19 44.97 0.73 -3.93 16 17 C -0.15 -3.67 4.24 30.69 0.13 -3.54 16 18 C 0.08 1.88 6.68 72.01 0.48 2.36 16 19 O -0.39 -9.75 10.77 -148.98 -1.60 -11.36 16 20 C 0.07 1.50 6.68 72.01 0.48 1.99 16 21 C -0.14 -2.87 4.86 30.68 0.15 -2.72 16 22 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 23 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 24 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 25 H 0.08 2.91 5.84 -2.38 -0.01 2.89 16 26 H 0.03 1.33 5.78 -2.39 -0.01 1.31 16 27 H 0.35 11.02 8.20 -89.69 -0.74 10.29 16 28 H 0.08 2.25 5.70 -2.39 -0.01 2.24 16 29 H 0.10 2.09 7.90 -2.39 -0.02 2.07 16 30 H 0.05 1.50 7.75 -2.39 -0.02 1.49 16 31 H 0.11 2.33 8.14 -2.38 -0.02 2.31 16 32 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.06 1.37 7.75 -2.39 -0.02 1.36 16 34 H 0.10 1.80 7.58 -2.39 -0.02 1.78 16 35 H 0.09 1.75 8.05 -2.39 -0.02 1.73 16 Total: -1.00 -62.65 288.44 3.54 -59.11 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.38 Total: 11.79 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 2.64 Total: -12.59 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -1.98 Total: -78.77 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -1.60 Total: -11.36 kcal Atomic # 9 Polarization: -16.23 SS G_CDS: 2.08 Total: -14.15 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -62.65 3.54 -59.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309559773.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.496 kcal (2) G-P(sol) polarization free energy of solvation -62.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds