Wall clock time and date at job start Mon Mar 30 2020 05:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.33325 * 122.71538 * 2 1 4 4 S 1.76162 * 108.10267 * 179.97438 * 3 2 1 5 5 C 1.70971 * 90.35418 * 0.02562 * 4 3 2 6 6 N 1.38611 * 124.95002 * 179.97438 * 5 4 3 7 7 C 1.46495 * 119.99961 * 0.02644 * 6 5 4 8 8 C 1.53777 * 113.61701 * 204.99739 * 7 6 5 9 9 C 1.53776 * 87.08399 * 220.01671 * 8 7 6 10 10 N 1.46504 * 113.61255 * 139.97856 * 9 8 7 11 11 C 1.46501 * 119.99968 * 301.52910 * 10 9 8 12 12 C 1.36937 * 119.99952 * 121.53470 * 10 9 8 13 13 H 1.07999 * 120.00238 * 334.53532 * 12 10 9 14 14 C 1.38818 * 120.00014 * 154.53754 * 12 10 9 15 15 N 1.31618 * 119.99903 * 3.71865 * 14 12 10 16 16 Si 1.86800 * 119.99547 * 183.71599 * 14 12 10 17 17 H 1.48496 * 109.47372 * 90.00305 * 16 14 12 18 18 H 1.48506 * 109.46573 * 209.99724 * 16 14 12 19 19 H 1.48498 * 109.47266 * 329.99623 * 16 14 12 20 20 C 1.53781 * 87.17249 * 25.39253 * 9 8 7 21 21 N 1.29686 * 110.10168 * 0.24204 * 5 4 3 22 22 H 1.09003 * 109.47357 * 90.00270 * 1 2 3 23 23 H 1.09001 * 109.47431 * 209.99846 * 1 2 3 24 24 H 1.09001 * 109.47398 * 330.00608 * 1 2 3 25 25 H 1.08007 * 125.94635 * 359.97438 * 3 2 1 26 26 H 0.97000 * 120.00032 * 180.02562 * 6 5 4 27 27 H 1.09008 * 112.85084 * 336.19817 * 7 6 5 28 28 H 1.09004 * 113.61566 * 105.46662 * 8 7 6 29 29 H 1.09000 * 113.61739 * 334.57097 * 8 7 6 30 30 H 1.08992 * 113.61938 * 270.80006 * 9 8 7 31 31 H 1.08996 * 109.47197 * 264.44331 * 11 10 9 32 32 H 1.09008 * 109.46719 * 144.44488 * 11 10 9 33 33 H 1.08996 * 109.47330 * 24.45003 * 11 10 9 34 34 H 0.96996 * 119.99876 * 180.02562 * 15 14 12 35 35 H 1.09003 * 113.62098 * 89.15566 * 20 9 8 36 36 H 1.09005 * 113.61524 * 220.06352 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2275 1.1218 0.0000 4 16 3.9321 0.6773 0.0007 5 6 3.5110 -0.9797 0.0002 6 7 4.4166 -2.0291 0.0000 7 6 5.8556 -1.7548 0.0007 8 6 6.7001 -2.8935 -0.5950 9 6 7.7135 -2.6249 0.5300 10 7 8.2903 -3.8434 1.1035 11 6 7.4168 -4.8557 1.7022 12 6 9.6458 -4.0359 1.0801 13 1 10.2470 -3.5526 0.3243 14 6 10.2473 -4.8525 2.0280 15 7 9.5078 -5.4996 2.9036 16 14 12.1063 -5.0330 2.0605 17 1 12.6890 -3.9947 2.9479 18 1 12.4638 -6.3800 2.5736 19 1 12.6438 -4.8681 0.6861 20 6 6.5413 -2.0550 1.3461 21 7 2.2209 -1.1117 -0.0056 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 1.8345 2.1278 -0.0004 26 1 4.0974 -2.9451 -0.0007 27 1 6.0995 -0.7725 -0.4040 28 1 7.0857 -2.6761 -1.5911 29 1 6.2233 -3.8715 -0.5289 30 1 8.4671 -1.8814 0.2705 31 1 7.3615 -4.6970 2.7791 32 1 7.8203 -5.8483 1.5014 33 1 6.4188 -4.7753 1.2713 34 1 9.9281 -6.0699 3.5662 35 1 6.0209 -2.8032 1.9440 36 1 6.7988 -1.1615 1.9149 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309615744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:14 Heat of formation + Delta-G solvation = 93.825564 kcal Electronic energy + Delta-G solvation = -17738.722968 eV Core-core repulsion = 14965.300397 eV Total energy + Delta-G solvation = -2773.422570 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.75154 -38.88159 -35.27164 -33.54431 -30.97734 -30.03648 -27.44662 -26.10079 -25.20814 -24.64355 -23.19129 -21.68099 -19.79806 -18.42420 -17.99227 -16.90834 -16.34896 -15.71073 -15.07397 -14.69352 -14.48838 -14.03258 -13.52857 -13.23743 -12.95395 -12.72566 -12.66576 -12.44911 -11.99871 -11.68382 -11.46813 -11.14796 -10.85865 -10.61493 -10.49851 -10.40032 -10.29691 -9.93703 -9.78383 -9.76239 -9.51659 -9.06503 -8.54807 -7.58427 -6.77042 -5.78717 -3.26357 1.10259 1.28244 1.91102 2.99652 3.11362 3.35226 3.41588 3.42594 4.44650 4.63599 4.89439 5.05710 5.13109 5.20046 5.34376 5.35797 5.49750 5.58682 5.68555 5.74715 5.82417 5.91481 6.18952 6.23287 6.28021 6.44924 6.51207 6.71721 6.76186 7.03849 7.43617 7.47284 7.72469 7.80563 8.05808 8.36660 9.20397 9.81217 10.31305 11.25638 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.053225 B = 0.003609 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.943801 B = 7756.167325 C = 7993.477283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.115 3.885 3 C -0.321 4.321 4 S 0.086 5.914 5 C 0.333 3.667 6 N -0.674 5.674 7 C 0.119 3.881 8 C -0.166 4.166 9 C 0.172 3.828 10 N -0.586 5.586 11 C 0.166 3.834 12 C -0.262 4.262 13 H 0.070 0.930 14 C 0.007 3.993 15 N -0.908 5.908 16 Si 0.906 3.094 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.279 1.279 20 C -0.171 4.171 21 N -0.565 5.565 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.168 0.832 26 H 0.411 0.589 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.026 0.974 32 H 0.052 0.948 33 H -0.007 1.007 34 H 0.253 0.747 35 H 0.087 0.913 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.146 11.335 -6.073 18.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.017 4.017 3 C -0.462 4.462 4 S 0.333 5.667 5 C -0.039 4.039 6 N -0.311 5.311 7 C 0.014 3.986 8 C -0.208 4.208 9 C 0.060 3.940 10 N -0.305 5.305 11 C 0.022 3.978 12 C -0.391 4.391 13 H 0.088 0.912 14 C -0.192 4.192 15 N -0.552 5.552 16 Si 0.736 3.264 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.205 1.205 20 C -0.212 4.212 21 N -0.292 5.292 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.186 0.814 26 H 0.250 0.750 27 H 0.118 0.882 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.011 0.989 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.115 11.214 -5.927 17.540 hybrid contribution -0.075 -0.501 0.159 0.531 sum -12.190 10.713 -5.768 17.223 Atomic orbital electron populations 1.20335 0.87701 1.03023 1.02634 1.19841 0.97414 0.86212 0.98237 1.26115 0.93907 1.03235 1.22983 1.83917 1.08335 0.99874 1.74529 1.23663 0.90315 0.93388 0.96566 1.44325 1.03441 1.05449 1.77918 1.22743 0.76241 0.99879 0.99781 1.24141 0.98475 0.97392 1.00771 1.21445 0.91391 0.89794 0.91357 1.43858 1.03521 1.15375 1.67741 1.20840 0.88568 0.92666 0.95730 1.19249 0.82803 1.27696 1.09358 0.91205 1.25189 0.98015 0.99751 0.96215 1.70083 1.33396 1.31794 1.19968 0.86235 0.85361 0.77089 0.77750 1.21305 1.21678 1.20469 1.24259 0.99155 1.01540 0.96278 1.66298 1.02479 1.31528 1.28900 0.90859 0.90803 0.90914 0.81407 0.75044 0.88172 0.91523 0.89619 0.89402 0.95517 0.92946 0.98872 0.93635 0.89415 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.30 36.00 0.37 -0.35 16 2 C 0.11 1.48 6.74 -84.18 -0.57 0.92 16 3 C -0.32 -3.79 11.10 29.02 0.32 -3.47 16 4 S 0.09 1.09 21.69 -107.50 -2.33 -1.25 16 5 C 0.33 4.87 8.24 -87.68 -0.72 4.15 16 6 N -0.67 -9.54 5.51 -54.90 -0.30 -9.85 16 7 C 0.12 1.69 4.23 -67.03 -0.28 1.41 16 8 C -0.17 -2.63 7.34 -25.92 -0.19 -2.82 16 9 C 0.17 3.27 4.35 -67.12 -0.29 2.97 16 10 N -0.59 -14.14 3.14 -172.55 -0.54 -14.68 16 11 C 0.17 4.00 7.65 59.85 0.46 4.45 16 12 C -0.26 -6.99 9.67 -15.06 -0.15 -7.14 16 13 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 14 C 0.01 0.18 5.38 -17.43 -0.09 0.09 16 15 N -0.91 -25.95 10.14 55.49 0.56 -25.39 16 16 Si 0.91 21.40 29.56 -169.99 -5.02 16.38 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C -0.17 -2.87 7.31 -25.83 -0.19 -3.06 16 21 N -0.56 -8.63 10.59 -11.36 -0.12 -8.75 16 22 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 25 H 0.17 1.52 8.06 -52.48 -0.42 1.10 16 26 H 0.41 5.70 8.85 -40.82 -0.36 5.34 16 27 H 0.10 1.31 7.06 -51.92 -0.37 0.94 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.09 1.43 6.87 -51.93 -0.36 1.07 16 30 H 0.09 1.63 8.05 -51.93 -0.42 1.21 16 31 H 0.03 0.70 7.43 -51.93 -0.39 0.31 16 32 H 0.05 1.38 7.05 -51.92 -0.37 1.02 16 33 H -0.01 -0.15 6.12 -51.93 -0.32 -0.47 16 34 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.09 1.61 6.69 -51.93 -0.35 1.27 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 307.26 15.07 4.63 4.63 Total: -1.00 -29.61 307.26 -9.46 -39.07 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.00 Total: 2.68 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -1.33 Total: -2.85 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.40 Total: -58.67 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.33 Total: -1.25 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.61 -9.46 -39.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309615744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.896 kcal (2) G-P(sol) polarization free energy of solvation -29.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds