Wall clock time and date at job start Mon Mar 30 2020 05:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.33325 * 122.71538 * 2 1 4 4 S 1.76162 * 108.10267 * 179.97438 * 3 2 1 5 5 C 1.70971 * 90.35418 * 0.02562 * 4 3 2 6 6 N 1.38611 * 124.95002 * 179.97438 * 5 4 3 7 7 C 1.46495 * 119.99961 * 0.02644 * 6 5 4 8 8 C 1.53777 * 113.61701 * 204.99739 * 7 6 5 9 9 C 1.53776 * 87.08399 * 220.01671 * 8 7 6 10 10 N 1.46504 * 113.61255 * 139.97856 * 9 8 7 11 11 C 1.46501 * 119.99968 * 301.52910 * 10 9 8 12 12 C 1.36937 * 119.99952 * 121.53470 * 10 9 8 13 13 H 1.07999 * 120.00238 * 334.53532 * 12 10 9 14 14 C 1.38818 * 120.00014 * 154.53754 * 12 10 9 15 15 N 1.31618 * 119.99903 * 3.71865 * 14 12 10 16 16 Si 1.86800 * 119.99547 * 183.71599 * 14 12 10 17 17 H 1.48496 * 109.47372 * 90.00305 * 16 14 12 18 18 H 1.48506 * 109.46573 * 209.99724 * 16 14 12 19 19 H 1.48498 * 109.47266 * 329.99623 * 16 14 12 20 20 C 1.53781 * 87.17249 * 25.39253 * 9 8 7 21 21 N 1.29686 * 110.10168 * 0.24204 * 5 4 3 22 22 H 1.09003 * 109.47357 * 90.00270 * 1 2 3 23 23 H 1.09001 * 109.47431 * 209.99846 * 1 2 3 24 24 H 1.09001 * 109.47398 * 330.00608 * 1 2 3 25 25 H 1.08007 * 125.94635 * 359.97438 * 3 2 1 26 26 H 0.97000 * 120.00032 * 180.02562 * 6 5 4 27 27 H 1.09008 * 112.85084 * 336.19817 * 7 6 5 28 28 H 1.09004 * 113.61566 * 105.46662 * 8 7 6 29 29 H 1.09000 * 113.61739 * 334.57097 * 8 7 6 30 30 H 1.08992 * 113.61938 * 270.80006 * 9 8 7 31 31 H 1.08996 * 109.47197 * 264.44331 * 11 10 9 32 32 H 1.09008 * 109.46719 * 144.44488 * 11 10 9 33 33 H 1.08996 * 109.47330 * 24.45003 * 11 10 9 34 34 H 0.96996 * 119.99876 * 180.02562 * 15 14 12 35 35 H 1.09003 * 113.62098 * 89.15566 * 20 9 8 36 36 H 1.09005 * 113.61524 * 220.06352 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2275 1.1218 0.0000 4 16 3.9321 0.6773 0.0007 5 6 3.5110 -0.9797 0.0002 6 7 4.4166 -2.0291 0.0000 7 6 5.8556 -1.7548 0.0007 8 6 6.7001 -2.8935 -0.5950 9 6 7.7135 -2.6249 0.5300 10 7 8.2903 -3.8434 1.1035 11 6 7.4168 -4.8557 1.7022 12 6 9.6458 -4.0359 1.0801 13 1 10.2470 -3.5526 0.3243 14 6 10.2473 -4.8525 2.0280 15 7 9.5078 -5.4996 2.9036 16 14 12.1063 -5.0330 2.0605 17 1 12.6890 -3.9947 2.9479 18 1 12.4638 -6.3800 2.5736 19 1 12.6438 -4.8681 0.6861 20 6 6.5413 -2.0550 1.3461 21 7 2.2209 -1.1117 -0.0056 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 1.8345 2.1278 -0.0004 26 1 4.0974 -2.9451 -0.0007 27 1 6.0995 -0.7725 -0.4040 28 1 7.0857 -2.6761 -1.5911 29 1 6.2233 -3.8715 -0.5289 30 1 8.4671 -1.8814 0.2705 31 1 7.3615 -4.6970 2.7791 32 1 7.8203 -5.8483 1.5014 33 1 6.4188 -4.7753 1.2713 34 1 9.9281 -6.0699 3.5662 35 1 6.0209 -2.8032 1.9440 36 1 6.7988 -1.1615 1.9149 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309615744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:13 Heat of formation + Delta-G solvation = 76.060987 kcal Electronic energy + Delta-G solvation = -17739.493298 eV Core-core repulsion = 14965.300397 eV Total energy + Delta-G solvation = -2774.192900 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.84885 -40.16773 -36.80917 -35.01461 -32.52669 -31.36098 -28.31081 -28.07564 -26.55277 -26.17334 -24.42007 -23.12911 -20.98499 -19.73345 -19.18698 -18.69676 -17.39189 -17.33007 -16.21411 -16.16425 -15.94020 -15.15954 -14.95093 -14.68347 -14.36827 -13.93888 -13.82832 -13.37704 -13.31954 -13.14417 -13.02419 -12.71783 -12.36817 -12.36697 -12.18449 -12.04203 -11.80791 -11.63929 -11.41553 -10.90805 -10.58887 -10.55462 -10.07473 -8.74547 -8.58330 -7.83616 -5.32391 0.10754 0.28111 0.95158 1.47942 1.48907 1.57491 1.99666 2.03660 2.51523 3.30238 3.57080 3.66793 3.75407 3.85237 4.02796 4.25997 4.42299 4.52671 4.59366 4.76483 4.83533 4.87091 4.92311 4.95163 4.98081 5.13207 5.13934 5.31472 5.41803 5.50410 5.65323 5.76544 5.82566 6.34841 6.38096 7.05153 7.17404 7.88494 8.33814 9.19701 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.053225 B = 0.003609 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.943801 B = 7756.167325 C = 7993.477283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.089 3.911 3 C -0.312 4.312 4 S 0.104 5.896 5 C 0.308 3.692 6 N -0.677 5.677 7 C 0.145 3.855 8 C -0.153 4.153 9 C 0.152 3.848 10 N -0.604 5.604 11 C 0.186 3.814 12 C -0.267 4.267 13 H 0.077 0.923 14 C -0.052 4.052 15 N -0.940 5.940 16 Si 0.970 3.030 17 H -0.285 1.285 18 H -0.297 1.297 19 H -0.267 1.267 20 C -0.166 4.166 21 N -0.589 5.589 22 H 0.084 0.916 23 H 0.066 0.934 24 H 0.096 0.904 25 H 0.198 0.802 26 H 0.410 0.590 27 H 0.120 0.880 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.094 0.906 31 H -0.004 1.004 32 H 0.020 0.980 33 H 0.023 0.977 34 H 0.247 0.753 35 H 0.069 0.931 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.842 13.493 -7.333 20.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.042 4.042 3 C -0.452 4.452 4 S 0.351 5.649 5 C -0.063 4.063 6 N -0.315 5.315 7 C 0.039 3.961 8 C -0.194 4.194 9 C 0.044 3.956 10 N -0.325 5.325 11 C 0.042 3.958 12 C -0.397 4.397 13 H 0.094 0.906 14 C -0.247 4.247 15 N -0.587 5.587 16 Si 0.798 3.202 17 H -0.212 1.212 18 H -0.224 1.224 19 H -0.192 1.192 20 C -0.208 4.208 21 N -0.317 5.317 22 H 0.102 0.898 23 H 0.085 0.915 24 H 0.115 0.885 25 H 0.215 0.785 26 H 0.248 0.752 27 H 0.138 0.862 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.015 0.985 32 H 0.039 0.961 33 H 0.041 0.959 34 H 0.056 0.944 35 H 0.088 0.912 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.848 13.423 -7.222 19.935 hybrid contribution 0.041 -1.060 0.510 1.177 sum -12.807 12.364 -6.713 19.025 Atomic orbital electron populations 1.20428 0.85486 1.03870 1.03600 1.20396 0.99016 0.85951 0.98819 1.26545 0.93284 1.04360 1.21055 1.83802 1.09035 0.98193 1.73831 1.23858 0.90487 0.94290 0.97633 1.44192 1.03195 1.05558 1.78579 1.22458 0.76306 1.00054 0.97254 1.23915 0.97314 0.97699 1.00429 1.21790 0.92495 0.88404 0.92957 1.44059 1.02953 1.17218 1.68285 1.20457 0.89851 0.91327 0.94193 1.19640 0.84236 1.26797 1.09025 0.90558 1.25949 1.02100 1.00221 0.96417 1.70273 1.34733 1.32861 1.20848 0.85223 0.80503 0.76381 0.78068 1.21204 1.22387 1.19158 1.24111 0.98289 1.01078 0.97304 1.66314 1.03101 1.33231 1.29033 0.89770 0.91513 0.88528 0.78505 0.75181 0.86220 0.89787 0.90484 0.88766 0.98517 0.96101 0.95907 0.94379 0.91237 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.30 71.23 0.73 -0.48 16 2 C 0.09 2.10 6.74 41.40 0.28 2.38 16 3 C -0.31 -6.42 11.10 66.71 0.74 -5.68 16 4 S 0.10 2.36 21.69 -56.49 -1.23 1.14 16 5 C 0.31 8.54 8.24 179.32 1.48 10.02 16 6 N -0.68 -18.24 5.51 -327.61 -1.81 -20.05 16 7 C 0.14 3.84 4.23 45.58 0.19 4.03 16 8 C -0.15 -4.56 7.34 31.12 0.23 -4.33 16 9 C 0.15 5.65 4.35 45.52 0.20 5.85 16 10 N -0.60 -29.35 3.14 -699.84 -2.20 -31.55 16 11 C 0.19 9.21 7.65 127.77 0.98 10.19 16 12 C -0.27 -14.31 9.67 84.03 0.81 -13.49 16 13 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 14 C -0.05 -2.89 5.38 84.86 0.46 -2.44 16 15 N -0.94 -55.42 10.14 21.65 0.22 -55.20 16 16 Si 0.97 44.46 29.56 68.60 2.03 46.49 16 17 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 18 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 C -0.17 -5.43 7.31 31.18 0.23 -5.20 16 21 N -0.59 -17.20 10.59 -189.86 -2.01 -19.21 16 22 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.10 1.07 8.12 -2.39 -0.02 1.05 16 25 H 0.20 2.76 8.06 -2.91 -0.02 2.74 16 26 H 0.41 11.05 8.85 -92.71 -0.82 10.22 16 27 H 0.12 2.76 7.06 -2.38 -0.02 2.75 16 28 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 29 H 0.08 2.47 6.87 -2.39 -0.02 2.45 16 30 H 0.09 3.35 8.05 -2.39 -0.02 3.33 16 31 H 0.00 -0.19 7.43 -2.39 -0.02 -0.21 16 32 H 0.02 1.12 7.05 -2.38 -0.02 1.11 16 33 H 0.02 0.96 6.12 -2.39 -0.01 0.94 16 34 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 35 H 0.07 2.55 6.69 -2.39 -0.02 2.53 16 36 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -64.39 307.26 1.60 -62.79 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.27 Total: 14.76 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 6.32 Total: 0.84 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -5.80 Total: -126.02 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -1.23 Total: 1.14 kcal Total: -64.39 1.60 -62.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309615744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.854 kcal (2) G-P(sol) polarization free energy of solvation -64.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds