Wall clock time and date at job start Mon Mar 30 2020 06:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50699 * 109.47265 * 120.00252 * 2 1 3 5 5 H 1.08003 * 119.99963 * 119.99543 * 4 2 1 6 6 C 1.37874 * 120.00270 * 299.99763 * 4 2 1 7 7 N 1.31513 * 120.00302 * 179.97438 * 6 4 2 8 8 Si 1.86805 * 119.99832 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47310 * 89.99428 * 8 6 4 10 10 H 1.48491 * 109.47296 * 209.99911 * 8 6 4 11 11 H 1.48502 * 109.46905 * 329.99956 * 8 6 4 12 12 N 1.46906 * 109.46907 * 240.00230 * 2 1 3 13 13 C 1.46853 * 110.99832 * 184.21088 * 12 2 1 14 14 C 1.53033 * 109.52262 * 174.16246 * 13 12 2 15 15 C 1.53112 * 109.27992 * 59.17361 * 14 13 12 16 16 C 1.53120 * 109.16707 * 302.34582 * 15 14 13 17 17 O 1.42893 * 109.50334 * 297.71773 * 16 15 14 18 18 C 1.53001 * 109.53910 * 177.61333 * 16 15 14 19 19 F 1.39902 * 109.47047 * 300.18010 * 18 16 15 20 20 F 1.39891 * 109.47001 * 60.17707 * 18 16 15 21 21 F 1.39897 * 109.46724 * 180.18090 * 18 16 15 22 22 C 1.46844 * 110.99887 * 59.99965 * 12 2 1 23 23 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47230 * 299.99144 * 1 2 3 25 25 H 1.09001 * 109.47375 * 59.99983 * 1 2 3 26 26 H 0.97002 * 119.99998 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.46125 * 294.17808 * 13 12 2 28 28 H 1.09003 * 109.46462 * 54.14202 * 13 12 2 29 29 H 1.09007 * 109.50330 * 299.23709 * 14 13 12 30 30 H 1.08999 * 109.53502 * 179.13924 * 14 13 12 31 31 H 1.09001 * 109.52454 * 182.44025 * 15 14 13 32 32 H 1.08999 * 109.57341 * 62.28839 * 15 14 13 33 33 H 0.96704 * 113.99704 * 299.79555 * 17 16 15 34 34 H 1.09000 * 109.46299 * 305.85220 * 22 12 2 35 35 H 1.08997 * 109.46352 * 65.82665 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2395 2.4827 7 7 2.1373 -0.8598 3.5565 8 14 0.6248 1.2789 2.6542 9 1 -0.8028 0.8726 2.6998 10 1 0.9760 1.9949 3.9068 11 1 0.8471 2.1764 1.4921 12 7 2.0196 -0.6925 -1.1995 13 6 3.4841 -0.7999 -1.1842 14 6 3.9470 -1.6500 -2.3695 15 6 3.4779 -0.9979 -3.6730 16 6 1.9538 -0.8537 -3.6429 17 8 1.3536 -2.1480 -3.5633 18 6 1.4813 -0.1489 -4.9161 19 9 2.0707 1.1175 -4.9942 20 9 1.8520 -0.9054 -6.0328 21 9 0.0892 -0.0142 -4.8851 22 6 1.5487 -0.0265 -2.4206 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 1.9033 -0.5282 4.4375 27 1 3.9220 0.1955 -1.2582 28 1 3.8042 -1.2690 -0.2538 29 1 3.5205 -2.6499 -2.2888 30 1 5.0349 -1.7171 -2.3671 31 1 3.7680 -1.6227 -4.5178 32 1 3.9351 -0.0136 -3.7741 33 1 1.5679 -2.7273 -4.3073 34 1 0.4631 0.0659 -2.3883 35 1 1.9957 0.9652 -2.4889 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354395462.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:43 Heat of formation + Delta-G solvation = -190.284206 kcal Electronic energy + Delta-G solvation = -22340.971250 eV Core-core repulsion = 18538.326394 eV Total energy + Delta-G solvation = -3802.644857 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.19473 -47.73000 -47.62163 -39.38673 -36.40034 -33.77823 -32.03851 -30.73840 -29.43001 -26.25491 -24.89359 -23.95809 -21.92989 -20.33754 -19.66457 -18.42491 -18.30797 -18.24144 -16.81839 -16.29513 -15.38914 -14.78815 -14.58261 -14.45774 -14.18866 -14.09092 -13.95847 -13.81832 -13.79352 -13.58312 -13.19199 -12.91548 -12.70476 -12.29762 -12.20855 -11.90705 -11.54477 -10.93982 -10.84703 -10.67145 -10.56078 -10.21781 -10.05761 -9.93093 -9.51140 -9.03590 -8.58957 -7.43229 -6.09926 -4.09074 2.59713 3.25529 3.34833 3.36947 3.61629 3.69597 3.86902 4.32750 4.37073 4.62515 4.66202 4.86648 5.20567 5.25693 5.34124 5.62152 5.72853 5.83980 5.92256 6.00407 6.04119 6.34007 6.43830 6.48456 6.60945 6.75238 6.85073 7.24526 7.38497 7.54503 7.84976 8.00431 8.59563 8.95596 9.51516 11.02481 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.030860 B = 0.006337 C = 0.005772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.093267 B = 4417.260611 C = 4849.953190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.183 3.817 3 H -0.001 1.001 4 C -0.507 4.507 5 H 0.085 0.915 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.506 5.506 13 C 0.057 3.943 14 C -0.109 4.109 15 C -0.148 4.148 16 C 0.108 3.892 17 O -0.503 6.503 18 C 0.421 3.579 19 F -0.181 7.181 20 F -0.187 7.187 21 F -0.176 7.176 22 C 0.059 3.941 23 H 0.064 0.936 24 H 0.042 0.958 25 H 0.028 0.972 26 H 0.264 0.736 27 H 0.022 0.978 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.373 0.627 34 H 0.092 0.908 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.288 0.892 -16.835 16.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.077 3.923 3 H 0.016 0.984 4 C -0.545 4.545 5 H 0.103 0.897 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.716 3.284 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.195 1.195 12 N -0.230 5.230 13 C -0.071 4.071 14 C -0.146 4.146 15 C -0.186 4.186 16 C 0.064 3.936 17 O -0.307 6.307 18 C 0.366 3.634 19 F -0.162 7.162 20 F -0.169 7.169 21 F -0.157 7.157 22 C -0.070 4.070 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.119 0.881 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.220 0.780 34 H 0.110 0.890 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.843 0.674 -16.078 16.114 hybrid contribution -0.258 1.602 -0.712 1.772 sum 0.585 2.276 -16.790 16.954 Atomic orbital electron populations 1.22218 0.98344 1.01667 0.98197 1.19704 0.91646 0.92565 0.88429 0.98375 1.20942 1.32132 1.13651 0.87745 0.89714 1.24905 0.95743 0.96594 0.95790 1.69871 1.45610 1.40178 0.97895 0.86899 0.80894 0.83789 0.76851 1.20458 1.22455 1.19457 1.61772 1.09627 1.51472 1.00142 1.22114 0.87944 0.97755 0.99304 1.21540 0.99866 1.00741 0.92481 1.22319 0.92418 1.03047 1.00783 1.22465 0.94634 0.85921 0.90590 1.86908 1.73291 1.21903 1.48593 1.21840 0.75934 0.78100 0.87530 1.93168 1.83894 1.42422 1.96729 1.93140 1.91362 1.75923 1.56439 1.93193 1.30057 1.95788 1.96686 1.22079 1.02456 0.93286 0.89142 0.91710 0.93948 0.95283 0.92560 0.95952 0.88065 0.90219 0.91294 0.90795 0.90283 0.77977 0.88993 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.45 37.16 0.31 -2.94 16 2 C 0.18 4.29 1.66 -68.86 -0.11 4.17 16 3 H 0.00 -0.03 7.20 -51.93 -0.37 -0.40 16 4 C -0.51 -13.82 8.44 -34.44 -0.29 -14.11 16 5 H 0.08 2.49 6.64 -52.48 -0.35 2.14 16 6 C 0.07 2.02 5.45 -17.82 -0.10 1.93 16 7 N -0.90 -26.88 13.96 55.43 0.77 -26.11 16 8 Si 0.89 21.71 24.37 -169.99 -4.14 17.57 16 9 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 10 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.27 -6.36 6.53 56.52 0.37 -5.99 16 12 N -0.51 -10.20 4.40 -228.07 -1.00 -11.20 16 13 C 0.06 1.03 5.21 -3.83 -0.02 1.01 16 14 C -0.11 -1.52 5.94 -26.66 -0.16 -1.68 16 15 C -0.15 -1.82 4.74 -26.61 -0.13 -1.94 16 16 C 0.11 1.51 0.51 -90.53 -0.05 1.47 16 17 O -0.50 -7.10 12.26 -35.23 -0.43 -7.53 16 18 C 0.42 5.55 2.38 37.16 0.09 5.64 16 19 F -0.18 -2.42 16.23 2.25 0.04 -2.39 16 20 F -0.19 -2.23 16.48 2.25 0.04 -2.19 16 21 F -0.18 -2.53 16.76 2.25 0.04 -2.49 16 22 C 0.06 1.02 3.95 -3.83 -0.02 1.00 16 23 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 24 H 0.04 0.97 3.27 -51.93 -0.17 0.80 16 25 H 0.03 0.56 6.28 -51.93 -0.33 0.23 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.10 2.10 6.02 -51.93 -0.31 1.78 16 29 H 0.08 1.17 7.80 -51.93 -0.40 0.77 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.74 7.89 -51.93 -0.41 0.33 16 32 H 0.08 0.94 7.74 -51.93 -0.40 0.54 16 33 H 0.37 3.60 8.69 45.56 0.40 4.00 16 34 H 0.09 1.63 5.69 -51.93 -0.30 1.33 16 35 H 0.05 0.79 7.78 -51.93 -0.40 0.39 16 LS Contribution 279.41 15.07 4.21 4.21 Total: -1.00 -29.85 279.41 -4.45 -34.30 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -3.50 Total: 1.27 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -0.46 Total: -5.44 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: -0.23 Total: -37.31 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.43 Total: -7.53 kcal Atomic # 9 Polarization: -7.18 SS G_CDS: 0.11 Total: -7.07 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.14 Total: 17.57 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.85 -4.45 -34.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354395462.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.984 kcal (2) G-P(sol) polarization free energy of solvation -29.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds