Wall clock time and date at job start Mon Mar 30 2020 06:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50699 * 109.47265 * 120.00252 * 2 1 3 5 5 H 1.08003 * 119.99963 * 119.99543 * 4 2 1 6 6 C 1.37874 * 120.00270 * 299.99763 * 4 2 1 7 7 N 1.31513 * 120.00302 * 179.97438 * 6 4 2 8 8 Si 1.86805 * 119.99832 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47310 * 89.99428 * 8 6 4 10 10 H 1.48491 * 109.47296 * 209.99911 * 8 6 4 11 11 H 1.48502 * 109.46905 * 329.99956 * 8 6 4 12 12 N 1.46906 * 109.46907 * 240.00230 * 2 1 3 13 13 C 1.46853 * 110.99832 * 184.21088 * 12 2 1 14 14 C 1.53033 * 109.52262 * 174.16246 * 13 12 2 15 15 C 1.53112 * 109.27992 * 59.17361 * 14 13 12 16 16 C 1.53120 * 109.16707 * 302.34582 * 15 14 13 17 17 O 1.42893 * 109.50334 * 297.71773 * 16 15 14 18 18 C 1.53001 * 109.53910 * 177.61333 * 16 15 14 19 19 F 1.39902 * 109.47047 * 300.18010 * 18 16 15 20 20 F 1.39891 * 109.47001 * 60.17707 * 18 16 15 21 21 F 1.39897 * 109.46724 * 180.18090 * 18 16 15 22 22 C 1.46844 * 110.99887 * 59.99965 * 12 2 1 23 23 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47230 * 299.99144 * 1 2 3 25 25 H 1.09001 * 109.47375 * 59.99983 * 1 2 3 26 26 H 0.97002 * 119.99998 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.46125 * 294.17808 * 13 12 2 28 28 H 1.09003 * 109.46462 * 54.14202 * 13 12 2 29 29 H 1.09007 * 109.50330 * 299.23709 * 14 13 12 30 30 H 1.08999 * 109.53502 * 179.13924 * 14 13 12 31 31 H 1.09001 * 109.52454 * 182.44025 * 15 14 13 32 32 H 1.08999 * 109.57341 * 62.28839 * 15 14 13 33 33 H 0.96704 * 113.99704 * 299.79555 * 17 16 15 34 34 H 1.09000 * 109.46299 * 305.85220 * 22 12 2 35 35 H 1.08997 * 109.46352 * 65.82665 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2395 2.4827 7 7 2.1373 -0.8598 3.5565 8 14 0.6248 1.2789 2.6542 9 1 -0.8028 0.8726 2.6998 10 1 0.9760 1.9949 3.9068 11 1 0.8471 2.1764 1.4921 12 7 2.0196 -0.6925 -1.1995 13 6 3.4841 -0.7999 -1.1842 14 6 3.9470 -1.6500 -2.3695 15 6 3.4779 -0.9979 -3.6730 16 6 1.9538 -0.8537 -3.6429 17 8 1.3536 -2.1480 -3.5633 18 6 1.4813 -0.1489 -4.9161 19 9 2.0707 1.1175 -4.9942 20 9 1.8520 -0.9054 -6.0328 21 9 0.0892 -0.0142 -4.8851 22 6 1.5487 -0.0265 -2.4206 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 1.9033 -0.5282 4.4375 27 1 3.9220 0.1955 -1.2582 28 1 3.8042 -1.2690 -0.2538 29 1 3.5205 -2.6499 -2.2888 30 1 5.0349 -1.7171 -2.3671 31 1 3.7680 -1.6227 -4.5178 32 1 3.9351 -0.0136 -3.7741 33 1 1.5679 -2.7273 -4.3073 34 1 0.4631 0.0659 -2.3883 35 1 1.9957 0.9652 -2.4889 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354395462.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:43 Heat of formation + Delta-G solvation = -213.422183 kcal Electronic energy + Delta-G solvation = -22341.974588 eV Core-core repulsion = 18538.326394 eV Total energy + Delta-G solvation = -3803.648195 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.21764 -48.71992 -48.67643 -40.66842 -37.81473 -35.33299 -33.88196 -31.96724 -31.06870 -27.76188 -26.43896 -25.44615 -23.16556 -21.91513 -21.00588 -19.49853 -19.39601 -19.32924 -18.84015 -17.61806 -16.74511 -16.28176 -15.96711 -15.57229 -15.53828 -15.30444 -15.11457 -14.92811 -14.86037 -14.83363 -14.70905 -14.53911 -14.14623 -13.87994 -13.49276 -13.35616 -13.00949 -12.61702 -12.48793 -12.30374 -12.07223 -11.75338 -11.47824 -11.35435 -11.19157 -10.92128 -10.71370 -9.02456 -8.27963 -6.30981 1.30489 1.34476 1.44260 1.53456 2.31307 2.54907 2.67119 2.77235 3.05361 3.23259 3.32423 3.58284 3.72398 4.11592 4.17422 4.33913 4.48528 4.54347 4.56519 4.61148 4.67894 4.77750 4.91009 4.96843 4.98267 5.27179 5.36634 5.46275 5.63051 5.98228 6.35292 6.55368 6.66394 6.75589 7.33488 8.87882 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.030860 B = 0.006337 C = 0.005772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.093267 B = 4417.260611 C = 4849.953190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.185 3.815 3 H -0.007 1.007 4 C -0.505 4.505 5 H 0.048 0.952 6 C 0.016 3.984 7 N -0.945 5.945 8 Si 0.944 3.056 9 H -0.267 1.267 10 H -0.297 1.297 11 H -0.252 1.252 12 N -0.518 5.518 13 C 0.054 3.946 14 C -0.099 4.099 15 C -0.142 4.142 16 C 0.113 3.887 17 O -0.521 6.521 18 C 0.430 3.570 19 F -0.181 7.181 20 F -0.176 7.176 21 F -0.184 7.184 22 C 0.055 3.945 23 H 0.054 0.946 24 H 0.036 0.964 25 H 0.059 0.941 26 H 0.266 0.734 27 H 0.024 0.976 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.393 0.607 34 H 0.085 0.915 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.971 1.789 -19.307 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.077 3.923 3 H 0.010 0.990 4 C -0.543 4.543 5 H 0.066 0.934 6 C -0.182 4.182 7 N -0.586 5.586 8 Si 0.771 3.229 9 H -0.193 1.193 10 H -0.225 1.225 11 H -0.176 1.176 12 N -0.243 5.243 13 C -0.073 4.073 14 C -0.136 4.136 15 C -0.180 4.180 16 C 0.069 3.931 17 O -0.328 6.328 18 C 0.375 3.625 19 F -0.162 7.162 20 F -0.157 7.157 21 F -0.165 7.165 22 C -0.074 4.074 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.043 0.957 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.125 0.875 32 H 0.106 0.894 33 H 0.243 0.757 34 H 0.104 0.896 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.530 1.559 -18.598 18.671 hybrid contribution -0.096 1.230 0.012 1.234 sum 0.434 2.790 -18.586 18.799 Atomic orbital electron populations 1.22122 0.97092 1.01447 0.99350 1.19529 0.92584 0.91747 0.88425 0.98997 1.21179 1.30969 1.12458 0.89714 0.93425 1.25707 0.97290 0.99761 0.95437 1.70016 1.47692 1.42337 0.98514 0.85932 0.79424 0.80302 0.77214 1.19327 1.22517 1.17628 1.61681 1.10713 1.51623 1.00256 1.22110 0.87088 0.98374 0.99772 1.21447 1.01279 0.99371 0.91533 1.22324 0.90939 1.04060 1.00641 1.22276 0.95711 0.85652 0.89485 1.86864 1.73637 1.22214 1.50122 1.21577 0.75502 0.78008 0.87441 1.93174 1.83833 1.42468 1.96732 1.93166 1.91203 1.75614 1.55731 1.93184 1.30759 1.95827 1.96731 1.22122 1.02071 0.94201 0.88997 0.92677 0.94575 0.92222 0.92518 0.95749 0.91840 0.91029 0.88845 0.87505 0.89406 0.75651 0.89636 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.13 8.45 71.98 0.61 -5.52 16 2 C 0.18 8.61 1.66 44.17 0.07 8.68 16 3 H -0.01 -0.35 7.20 -2.39 -0.02 -0.37 16 4 C -0.50 -28.39 8.44 25.60 0.22 -28.17 16 5 H 0.05 2.97 6.64 -2.91 -0.02 2.95 16 6 C 0.02 0.90 5.45 84.65 0.46 1.36 16 7 N -0.95 -58.50 13.96 21.45 0.30 -58.20 16 8 Si 0.94 44.74 24.37 68.60 1.67 46.41 16 9 H -0.27 -12.14 6.87 99.48 0.68 -11.46 16 10 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 11 H -0.25 -11.15 6.53 99.48 0.65 -10.50 16 12 N -0.52 -20.65 4.40 -875.49 -3.85 -24.50 16 13 C 0.05 1.98 5.21 86.32 0.45 2.43 16 14 C -0.10 -2.57 5.94 30.64 0.18 -2.39 16 15 C -0.14 -2.99 4.74 30.67 0.15 -2.84 16 16 C 0.11 2.84 0.51 -10.74 -0.01 2.84 16 17 O -0.52 -13.40 12.26 -148.98 -1.83 -15.22 16 18 C 0.43 9.96 2.38 71.98 0.17 10.13 16 19 F -0.18 -4.27 16.23 44.97 0.73 -3.54 16 20 F -0.18 -3.53 16.48 44.97 0.74 -2.79 16 21 F -0.18 -4.80 16.76 44.97 0.75 -4.05 16 22 C 0.05 1.77 3.95 86.33 0.34 2.11 16 23 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.04 1.58 3.27 -2.39 -0.01 1.57 16 25 H 0.06 2.17 6.28 -2.39 -0.01 2.15 16 26 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 27 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 2.76 6.02 -2.39 -0.01 2.75 16 29 H 0.07 2.00 7.80 -2.38 -0.02 1.98 16 30 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.11 1.62 7.89 -2.39 -0.02 1.60 16 32 H 0.09 1.75 7.74 -2.39 -0.02 1.73 16 33 H 0.39 6.34 8.69 -74.05 -0.64 5.70 16 34 H 0.09 2.85 5.69 -2.39 -0.01 2.83 16 35 H 0.06 1.70 7.78 -2.39 -0.02 1.68 16 Total: -1.00 -65.62 279.41 1.56 -64.06 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.41 Total: 9.20 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 2.64 Total: -11.37 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -3.55 Total: -82.70 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -1.83 Total: -15.22 kcal Atomic # 9 Polarization: -12.59 SS G_CDS: 2.22 Total: -10.37 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.67 Total: 46.41 kcal Total: -65.62 1.56 -64.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354395462.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.367 kcal (2) G-P(sol) polarization free energy of solvation -65.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds