Wall clock time and date at job start Mon Mar 30 2020 04:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99852 * 2 1 4 4 H 1.48500 * 109.47265 * 274.97153 * 3 2 1 5 5 H 1.48498 * 109.47319 * 34.97598 * 3 2 1 6 6 H 1.48501 * 109.47120 * 154.97268 * 3 2 1 7 7 C 1.37873 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99758 * 188.91801 * 7 2 1 9 9 C 1.50703 * 120.00210 * 8.91609 * 7 2 1 10 10 H 1.08996 * 110.01753 * 306.69469 * 9 7 2 11 11 C 1.54269 * 110.02792 * 68.13366 * 9 7 2 12 12 C 1.54891 * 104.19128 * 142.89511 * 11 9 7 13 13 C 1.54883 * 102.75139 * 322.05481 * 12 11 9 14 14 H 1.08999 * 110.49100 * 279.26625 * 13 12 11 15 15 N 1.46897 * 110.48973 * 156.62151 * 13 12 11 16 16 C 1.46901 * 111.00195 * 90.22756 * 15 13 12 17 17 C 1.50697 * 109.47431 * 180.02562 * 16 15 13 18 18 C 1.31056 * 125.02017 * 89.99662 * 17 16 15 19 19 N 1.36583 * 115.98657 * 179.97438 * 18 17 16 20 20 H 0.96999 * 122.73398 * 180.02562 * 19 18 17 21 21 C 1.35696 * 114.52556 * 0.02562 * 19 18 17 22 22 N 1.31023 * 125.59822 * 179.97438 * 21 19 18 23 23 S 1.75902 * 125.01359 * 269.69833 * 17 16 15 24 24 C 1.53870 * 110.03272 * 185.29800 * 9 7 2 25 25 H 0.97005 * 119.99884 * 359.97438 * 1 2 3 26 26 H 1.08992 * 110.48739 * 261.57243 * 11 9 7 27 27 H 1.09003 * 110.48863 * 24.21801 * 11 9 7 28 28 H 1.09001 * 110.75867 * 80.37533 * 12 11 9 29 29 H 1.09008 * 110.75394 * 203.55983 * 12 11 9 30 30 H 1.00898 * 111.00659 * 214.18697 * 15 13 12 31 31 H 1.09010 * 109.46760 * 300.00330 * 16 15 13 32 32 H 1.08992 * 109.47206 * 59.99943 * 16 15 13 33 33 H 1.08004 * 122.00148 * 359.95597 * 18 17 16 34 34 H 0.96994 * 120.00578 * 180.02562 * 22 21 19 35 35 H 1.08999 * 110.03431 * 0.02562 * 24 9 7 36 36 H 1.09006 * 110.03009 * 121.43598 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3916 2.1071 -1.3948 5 1 1.5032 2.6200 0.8025 6 1 3.5953 1.4122 0.5923 7 6 2.0045 -1.1940 0.0005 8 1 3.0748 -1.1996 0.1455 9 6 1.2647 -2.4914 -0.2012 10 1 0.4445 -2.5680 0.5126 11 6 0.7212 -2.5710 -1.6427 12 6 0.8844 -4.0623 -2.0282 13 6 2.2348 -4.4397 -1.3702 14 1 3.0674 -4.1090 -1.9911 15 7 2.3074 -5.8887 -1.1400 16 6 2.8960 -6.5767 -2.2967 17 6 2.9534 -8.0578 -2.0245 18 6 2.0047 -8.9135 -2.3166 19 7 2.2517 -10.2160 -1.9879 20 1 1.6176 -10.9296 -2.1601 21 6 3.4562 -10.4302 -1.4011 22 7 3.9133 -11.5905 -0.9992 23 16 4.3069 -8.8944 -1.2746 24 6 2.2271 -3.6794 -0.0280 25 1 -0.4850 0.8401 0.0004 26 1 -0.3295 -2.2826 -1.6708 27 1 1.3093 -1.9385 -2.3077 28 1 0.0723 -4.6596 -1.6136 29 1 0.9334 -4.1782 -3.1110 30 1 2.8209 -6.0955 -0.2964 31 1 2.2829 -6.3933 -3.1792 32 1 3.9038 -6.1994 -2.4698 33 1 1.0829 -8.6070 -2.7886 34 1 4.7896 -11.6506 -0.5878 35 1 3.2291 -3.3177 0.2024 36 1 1.8734 -4.3332 0.7694 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378848950.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:02 Heat of formation + Delta-G solvation = 35.514147 kcal Electronic energy + Delta-G solvation = -17473.287561 eV Core-core repulsion = 14697.336418 eV Total energy + Delta-G solvation = -2775.951143 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.91529 -37.85687 -35.21683 -33.72438 -32.19766 -30.31477 -28.09855 -26.84397 -24.62828 -24.13925 -23.35406 -19.95475 -19.44352 -18.98391 -18.80087 -17.29948 -16.50195 -15.80485 -15.35700 -15.00197 -14.67579 -14.49945 -14.13220 -13.74564 -13.07195 -12.92206 -12.33139 -12.27888 -11.78404 -11.21615 -11.14118 -10.96617 -10.68292 -10.54533 -10.31976 -10.13738 -9.93658 -9.79209 -9.72310 -9.57074 -9.16095 -8.76069 -8.31661 -8.14030 -7.59482 -5.99571 -3.99642 1.06335 1.36935 1.63772 2.11911 2.68355 3.31058 3.38661 3.41312 4.45497 4.47665 4.70112 5.05300 5.15234 5.28721 5.31377 5.53351 5.65978 5.68073 5.76143 5.98070 6.31871 6.34388 6.52007 6.61202 6.68743 6.84664 6.86565 7.02324 7.16599 7.31127 7.48206 7.61183 7.68550 7.74304 7.90861 8.05004 8.49962 9.03744 9.62968 11.10590 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.049935 B = 0.003328 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.596000 B = 8410.940051 C = 8692.726828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.047 3.953 10 H 0.035 0.965 11 C -0.101 4.101 12 C -0.112 4.112 13 C 0.081 3.919 14 H 0.044 0.956 15 N -0.679 5.679 16 C 0.140 3.860 17 C -0.210 4.210 18 C 0.104 3.896 19 N -0.621 5.621 20 H 0.424 0.576 21 C 0.392 3.608 22 N -0.736 5.736 23 S -0.025 6.025 24 C -0.115 4.115 25 H 0.259 0.741 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.339 0.661 31 H 0.089 0.911 32 H 0.040 0.960 33 H 0.185 0.815 34 H 0.358 0.642 35 H 0.052 0.948 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.489 -17.375 -6.013 18.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.713 3.287 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.028 3.972 10 H 0.053 0.947 11 C -0.139 4.139 12 C -0.151 4.151 13 C -0.027 4.027 14 H 0.062 0.938 15 N -0.311 5.311 16 C 0.008 3.992 17 C -0.333 4.333 18 C -0.027 4.027 19 N -0.246 5.246 20 H 0.264 0.736 21 C 0.002 3.998 22 N -0.379 5.379 23 S 0.211 5.789 24 C -0.154 4.154 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.157 0.843 31 H 0.108 0.892 32 H 0.058 0.942 33 H 0.202 0.798 34 H 0.178 0.822 35 H 0.071 0.929 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.557 -17.917 -5.727 19.354 hybrid contribution 0.601 1.218 -0.261 1.383 sum 5.158 -16.699 -5.987 18.475 Atomic orbital electron populations 1.69986 1.05902 1.26378 1.50388 1.24980 0.94758 0.98971 0.95176 0.86701 0.80066 0.84031 0.77932 1.20782 1.21354 1.19962 1.21294 0.93612 0.90991 1.49318 0.92805 1.19183 0.93780 0.91290 0.92980 0.94693 1.22363 1.00444 0.91714 0.99404 1.22570 0.96241 0.98692 0.97561 1.22504 0.97482 0.84443 0.98310 0.93807 1.60759 1.56632 1.09586 1.04090 1.20255 0.98318 0.85100 0.95489 1.23034 0.97046 1.00260 1.12915 1.20529 1.00494 0.81551 1.00170 1.41671 1.16289 1.09165 1.57462 0.73610 1.24066 0.89245 0.93092 0.93378 1.68949 1.23007 1.18115 1.27814 1.85821 1.22013 1.00595 1.70423 1.22466 1.00975 0.97783 0.94132 0.93133 0.92889 0.93159 0.91810 0.93987 0.84317 0.89244 0.94202 0.79787 0.82204 0.92910 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.56 13.05 55.43 0.72 -24.84 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.88 21.18 29.55 -169.99 -5.02 16.15 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -13.93 8.29 -34.44 -0.29 -14.22 16 8 H 0.05 1.45 7.36 -52.48 -0.39 1.06 16 9 C 0.05 1.13 2.70 -90.65 -0.24 0.89 16 10 H 0.03 0.95 8.08 -51.93 -0.42 0.53 16 11 C -0.10 -2.25 5.97 -25.07 -0.15 -2.40 16 12 C -0.11 -2.00 6.57 -24.74 -0.16 -2.16 16 13 C 0.08 1.37 3.19 -66.06 -0.21 1.16 16 14 H 0.04 0.75 7.83 -51.93 -0.41 0.34 16 15 N -0.68 -9.41 6.32 -106.24 -0.67 -10.08 16 16 C 0.14 1.58 6.02 -4.98 -0.03 1.55 16 17 C -0.21 -2.16 5.94 -36.04 -0.21 -2.37 16 18 C 0.10 0.87 11.14 -17.17 -0.19 0.68 16 19 N -0.62 -5.28 5.66 -13.88 -0.08 -5.36 16 20 H 0.42 2.70 8.96 -40.82 -0.37 2.33 16 21 C 0.39 4.18 8.75 -89.34 -0.78 3.40 16 22 N -0.74 -8.33 14.18 30.43 0.43 -7.90 16 23 S -0.02 -0.26 23.35 -107.50 -2.51 -2.77 16 24 C -0.12 -2.30 5.92 -25.62 -0.15 -2.46 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 30 H 0.34 4.69 8.32 -39.29 -0.33 4.36 16 31 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 32 H 0.04 0.46 8.08 -51.93 -0.42 0.05 16 33 H 0.19 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.36 3.59 8.92 -40.82 -0.36 3.23 16 35 H 0.05 1.07 7.38 -51.93 -0.38 0.69 16 36 H 0.05 0.95 7.93 -51.93 -0.41 0.54 16 LS Contribution 312.83 15.07 4.71 4.71 Total: -1.00 -29.50 312.83 -10.07 -39.57 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.14 Total: 4.80 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -2.52 Total: -14.29 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.41 Total: -48.17 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -0.26 SS G_CDS: -2.51 Total: -2.77 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.50 -10.07 -39.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378848950.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.088 kcal (2) G-P(sol) polarization free energy of solvation -29.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds