Wall clock time and date at job start Mon Mar 30 2020 04:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99852 * 2 1 4 4 H 1.48500 * 109.47265 * 274.97153 * 3 2 1 5 5 H 1.48498 * 109.47319 * 34.97598 * 3 2 1 6 6 H 1.48501 * 109.47120 * 154.97268 * 3 2 1 7 7 C 1.37873 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99758 * 188.91801 * 7 2 1 9 9 C 1.50703 * 120.00210 * 8.91609 * 7 2 1 10 10 H 1.08996 * 110.01753 * 306.69469 * 9 7 2 11 11 C 1.54269 * 110.02792 * 68.13366 * 9 7 2 12 12 C 1.54891 * 104.19128 * 142.89511 * 11 9 7 13 13 C 1.54883 * 102.75139 * 322.05481 * 12 11 9 14 14 H 1.08999 * 110.49100 * 279.26625 * 13 12 11 15 15 N 1.46897 * 110.48973 * 156.62151 * 13 12 11 16 16 C 1.46901 * 111.00195 * 90.22756 * 15 13 12 17 17 C 1.50697 * 109.47431 * 180.02562 * 16 15 13 18 18 C 1.31056 * 125.02017 * 89.99662 * 17 16 15 19 19 N 1.36583 * 115.98657 * 179.97438 * 18 17 16 20 20 H 0.96999 * 122.73398 * 180.02562 * 19 18 17 21 21 C 1.35696 * 114.52556 * 0.02562 * 19 18 17 22 22 N 1.31023 * 125.59822 * 179.97438 * 21 19 18 23 23 S 1.75902 * 125.01359 * 269.69833 * 17 16 15 24 24 C 1.53870 * 110.03272 * 185.29800 * 9 7 2 25 25 H 0.97005 * 119.99884 * 359.97438 * 1 2 3 26 26 H 1.08992 * 110.48739 * 261.57243 * 11 9 7 27 27 H 1.09003 * 110.48863 * 24.21801 * 11 9 7 28 28 H 1.09001 * 110.75867 * 80.37533 * 12 11 9 29 29 H 1.09008 * 110.75394 * 203.55983 * 12 11 9 30 30 H 1.00898 * 111.00659 * 214.18697 * 15 13 12 31 31 H 1.09010 * 109.46760 * 300.00330 * 16 15 13 32 32 H 1.08992 * 109.47206 * 59.99943 * 16 15 13 33 33 H 1.08004 * 122.00148 * 359.95597 * 18 17 16 34 34 H 0.96994 * 120.00578 * 180.02562 * 22 21 19 35 35 H 1.08999 * 110.03431 * 0.02562 * 24 9 7 36 36 H 1.09006 * 110.03009 * 121.43598 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3916 2.1071 -1.3948 5 1 1.5032 2.6200 0.8025 6 1 3.5953 1.4122 0.5923 7 6 2.0045 -1.1940 0.0005 8 1 3.0748 -1.1996 0.1455 9 6 1.2647 -2.4914 -0.2012 10 1 0.4445 -2.5680 0.5126 11 6 0.7212 -2.5710 -1.6427 12 6 0.8844 -4.0623 -2.0282 13 6 2.2348 -4.4397 -1.3702 14 1 3.0674 -4.1090 -1.9911 15 7 2.3074 -5.8887 -1.1400 16 6 2.8960 -6.5767 -2.2967 17 6 2.9534 -8.0578 -2.0245 18 6 2.0047 -8.9135 -2.3166 19 7 2.2517 -10.2160 -1.9879 20 1 1.6176 -10.9296 -2.1601 21 6 3.4562 -10.4302 -1.4011 22 7 3.9133 -11.5905 -0.9992 23 16 4.3069 -8.8944 -1.2746 24 6 2.2271 -3.6794 -0.0280 25 1 -0.4850 0.8401 0.0004 26 1 -0.3295 -2.2826 -1.6708 27 1 1.3093 -1.9385 -2.3077 28 1 0.0723 -4.6596 -1.6136 29 1 0.9334 -4.1782 -3.1110 30 1 2.8209 -6.0955 -0.2964 31 1 2.2829 -6.3933 -3.1792 32 1 3.9038 -6.1994 -2.4698 33 1 1.0829 -8.6070 -2.7886 34 1 4.7896 -11.6506 -0.5878 35 1 3.2291 -3.3177 0.2024 36 1 1.8734 -4.3332 0.7694 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378848950.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:01 Heat of formation + Delta-G solvation = 16.045783 kcal Electronic energy + Delta-G solvation = -17474.131773 eV Core-core repulsion = 14697.336418 eV Total energy + Delta-G solvation = -2776.795355 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.65049 -39.32577 -36.40103 -34.86721 -33.92284 -31.37115 -29.83005 -28.25778 -25.94376 -25.19687 -24.71243 -21.11278 -20.92355 -20.26609 -19.69366 -18.52470 -18.03969 -16.67597 -16.61736 -16.39945 -16.06941 -15.67096 -15.37018 -14.66429 -14.52323 -14.16620 -14.01755 -13.50544 -13.30375 -13.06968 -12.58646 -12.38707 -12.06015 -11.87677 -11.79441 -11.61634 -11.48870 -11.37573 -11.03831 -10.75510 -10.57198 -10.53548 -10.42014 -9.27684 -8.37255 -8.11130 -6.17639 0.27506 0.60182 0.90529 1.37939 1.40827 1.42281 1.52034 1.99073 2.44866 3.19489 3.40574 3.87161 4.06224 4.11269 4.33418 4.47550 4.50706 4.56739 4.77439 4.84348 4.90766 4.95647 5.01756 5.13968 5.25713 5.32782 5.47042 5.55441 5.62398 5.69110 5.96126 6.00988 6.22933 6.23852 6.43831 6.51386 6.91886 6.95018 7.48332 8.98799 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.049935 B = 0.003328 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.596000 B = 8410.940051 C = 8692.726828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.948 3.052 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.530 4.530 8 H 0.051 0.949 9 C 0.037 3.963 10 H -0.004 1.004 11 C -0.095 4.095 12 C -0.097 4.097 13 C 0.097 3.903 14 H 0.047 0.953 15 N -0.676 5.676 16 C 0.144 3.856 17 C -0.232 4.232 18 C 0.125 3.875 19 N -0.612 5.612 20 H 0.436 0.564 21 C 0.387 3.613 22 N -0.753 5.753 23 S -0.044 6.044 24 C -0.109 4.109 25 H 0.259 0.741 26 H 0.027 0.973 27 H 0.035 0.965 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.340 0.660 31 H 0.104 0.896 32 H 0.037 0.963 33 H 0.218 0.782 34 H 0.361 0.639 35 H 0.046 0.954 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.875 -18.416 -7.211 20.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.568 4.568 8 H 0.070 0.930 9 C 0.018 3.982 10 H 0.014 0.986 11 C -0.134 4.134 12 C -0.135 4.135 13 C -0.012 4.012 14 H 0.065 0.935 15 N -0.307 5.307 16 C 0.014 3.986 17 C -0.354 4.354 18 C -0.007 4.007 19 N -0.238 5.238 20 H 0.278 0.722 21 C -0.002 4.002 22 N -0.397 5.397 23 S 0.192 5.808 24 C -0.147 4.147 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.158 0.842 31 H 0.123 0.877 32 H 0.055 0.945 33 H 0.234 0.766 34 H 0.181 0.819 35 H 0.065 0.935 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.948 -18.983 -6.930 20.806 hybrid contribution 0.453 1.497 0.144 1.571 sum 5.401 -17.486 -6.787 19.519 Atomic orbital electron populations 1.70111 1.07318 1.27120 1.51512 1.25750 0.95546 1.02375 0.95027 0.85699 0.78930 0.79877 0.78116 1.20089 1.21181 1.19237 1.21681 0.93724 0.92493 1.48877 0.93029 1.19192 0.93433 0.92332 0.93241 0.98622 1.22166 0.98255 0.95083 0.97913 1.22429 0.96880 0.94828 0.99394 1.22190 0.96975 0.86152 0.95904 0.93516 1.60699 1.57318 1.07426 1.05254 1.20236 0.98290 0.85401 0.94693 1.22910 0.97473 0.99952 1.15066 1.20988 1.00742 0.80900 0.98058 1.41758 1.15769 1.09752 1.56519 0.72247 1.24203 0.89867 0.92829 0.93339 1.68959 1.23522 1.18593 1.28607 1.85890 1.22896 1.01195 1.70810 1.22299 0.99225 0.96612 0.96535 0.93165 0.95423 0.94660 0.91442 0.91186 0.84214 0.87744 0.94460 0.76610 0.81892 0.93532 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.31 13.05 21.45 0.28 -54.03 16 2 C 0.01 0.65 5.30 84.65 0.45 1.09 16 3 Si 0.95 43.76 29.55 68.60 2.03 45.79 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 7 C -0.53 -29.20 8.29 25.60 0.21 -28.99 16 8 H 0.05 2.80 7.36 -2.91 -0.02 2.77 16 9 C 0.04 1.84 2.70 -10.82 -0.03 1.81 16 10 H 0.00 -0.26 8.08 -2.39 -0.02 -0.28 16 11 C -0.10 -4.31 5.97 31.67 0.19 -4.12 16 12 C -0.10 -3.26 6.57 31.88 0.21 -3.05 16 13 C 0.10 3.08 3.19 45.99 0.15 3.23 16 14 H 0.05 1.48 7.83 -2.39 -0.02 1.46 16 15 N -0.68 -16.94 6.32 -490.05 -3.09 -20.03 16 16 C 0.14 2.83 6.02 85.56 0.51 3.34 16 17 C -0.23 -4.11 5.94 25.59 0.15 -3.95 16 18 C 0.12 1.65 11.14 83.86 0.93 2.58 16 19 N -0.61 -8.70 5.66 -197.83 -1.12 -9.82 16 20 H 0.44 4.26 8.96 -92.71 -0.83 3.42 16 21 C 0.39 7.58 8.75 179.90 1.57 9.15 16 22 N -0.75 -16.13 14.18 -57.63 -0.82 -16.95 16 23 S -0.04 -0.87 23.35 -56.49 -1.32 -2.19 16 24 C -0.11 -4.29 5.92 31.32 0.19 -4.11 16 25 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.03 1.66 7.85 -2.39 -0.02 1.64 16 28 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.07 1.99 8.14 -2.38 -0.02 1.98 16 30 H 0.34 8.67 8.32 -89.70 -0.75 7.93 16 31 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.04 0.77 8.08 -2.39 -0.02 0.75 16 33 H 0.22 1.45 8.06 -2.91 -0.02 1.42 16 34 H 0.36 7.01 8.92 -92.71 -0.83 6.18 16 35 H 0.05 1.87 7.38 -2.39 -0.02 1.85 16 36 H 0.05 2.09 7.93 -2.38 -0.02 2.07 16 Total: -1.00 -64.44 312.83 -0.80 -65.23 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -1.29 Total: 15.02 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: 4.54 Total: -23.02 kcal Atomic # 7 Polarization: -96.08 SS G_CDS: -4.75 Total: -100.83 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -0.87 SS G_CDS: -1.32 Total: -2.19 kcal Total: -64.44 -0.80 -65.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378848950.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.279 kcal (2) G-P(sol) polarization free energy of solvation -64.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds