Wall clock time and date at job start Mon Mar 30 2020 04:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00122 * 2 1 4 4 H 1.48506 * 109.47156 * 239.99675 * 3 2 1 5 5 H 1.48496 * 109.47307 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47100 * 119.99828 * 3 2 1 7 7 C 1.37883 * 119.99345 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99279 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00158 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.01671 * 59.94062 * 9 7 2 11 11 C 1.53869 * 110.03004 * 298.54124 * 9 7 2 12 12 C 1.54266 * 106.60031 * 240.66866 * 11 9 7 13 13 C 1.54894 * 104.31305 * 336.32486 * 12 11 9 14 14 H 1.08993 * 110.76071 * 279.69749 * 13 12 11 15 15 N 1.46892 * 110.75562 * 156.31936 * 13 12 11 16 16 C 1.46896 * 111.00038 * 86.45635 * 15 13 12 17 17 C 1.50707 * 109.47676 * 179.97438 * 16 15 13 18 18 C 1.31047 * 125.01418 * 89.99557 * 17 16 15 19 19 N 1.36582 * 115.98169 * 180.02562 * 18 17 16 20 20 H 0.97001 * 122.73960 * 180.02562 * 19 18 17 21 21 C 1.35696 * 114.52879 * 0.02562 * 19 18 17 22 22 N 1.31025 * 125.60100 * 180.02562 * 21 19 18 23 23 S 1.75896 * 125.01195 * 269.70025 * 17 16 15 24 24 C 1.54266 * 110.07004 * 181.35410 * 9 7 2 25 25 H 0.96997 * 119.99897 * 0.02562 * 1 2 3 26 26 H 1.09001 * 110.02983 * 121.38618 * 11 9 7 27 27 H 1.08995 * 110.03881 * 359.95810 * 11 9 7 28 28 H 1.09002 * 110.48629 * 95.07240 * 12 11 9 29 29 H 1.08998 * 110.48744 * 217.58143 * 12 11 9 30 30 H 1.00906 * 111.00506 * 210.41191 * 15 13 12 31 31 H 1.08999 * 109.47539 * 299.99883 * 16 15 13 32 32 H 1.09003 * 109.46898 * 59.99768 * 16 15 13 33 33 H 1.08005 * 122.00734 * 359.97438 * 18 17 16 34 34 H 0.96995 * 120.00141 * 180.02562 * 22 21 19 35 35 H 1.09005 * 110.48526 * 261.59666 * 24 9 7 36 36 H 1.09007 * 110.48724 * 24.10150 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6204 -2.5660 -0.8861 11 6 0.3887 -2.6099 1.2702 12 6 0.8844 -3.8562 2.0323 13 6 1.5460 -4.7343 0.9412 14 1 0.7924 -5.2884 0.3818 15 7 2.5320 -5.6472 1.5346 16 6 1.8920 -6.8876 1.9926 17 6 2.9323 -7.7975 2.5935 18 6 3.2824 -7.8087 3.8563 19 7 4.2476 -8.7112 4.2017 20 1 4.5795 -8.8031 5.1085 21 6 4.7045 -9.4688 3.1728 22 7 5.6249 -10.3974 3.2593 23 16 3.8506 -9.0062 1.7048 24 6 2.2406 -3.6821 0.0354 25 1 -0.4850 0.8400 -0.0004 26 1 -0.6603 -2.7304 0.9997 27 1 0.5158 -1.7202 1.8867 28 1 1.6154 -3.5742 2.7902 29 1 0.0463 -4.3825 2.4891 30 1 3.2792 -5.8440 0.8857 31 1 1.1379 -6.6518 2.7433 32 1 1.4189 -7.3861 1.1465 33 1 2.8350 -7.1437 4.5803 34 1 5.8913 -10.8914 2.4683 35 1 2.3919 -4.0825 -0.9670 36 1 3.1914 -3.3713 0.4686 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378848952.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:09 Heat of formation + Delta-G solvation = 35.423954 kcal Electronic energy + Delta-G solvation = -17500.756285 eV Core-core repulsion = 14724.801231 eV Total energy + Delta-G solvation = -2775.955054 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.90914 -37.80782 -35.22769 -33.73647 -32.17291 -30.28615 -28.05063 -26.82509 -24.64533 -24.15497 -23.32437 -19.98445 -19.41353 -18.94983 -18.79271 -17.29546 -16.20678 -15.83133 -15.23438 -15.02213 -14.81983 -14.59065 -14.12138 -13.84826 -13.23365 -12.81359 -12.29664 -12.26664 -11.59689 -11.23319 -11.03899 -10.95731 -10.70746 -10.52568 -10.24464 -10.20855 -9.89576 -9.79264 -9.72089 -9.57864 -9.13747 -8.65342 -8.31995 -8.14628 -7.59046 -5.96836 -3.99497 1.06574 1.37460 1.64020 2.12557 2.69027 3.34421 3.38959 3.41814 4.44273 4.50388 4.70368 5.05994 5.16011 5.29259 5.33982 5.52138 5.66802 5.68738 5.76882 5.96813 6.30322 6.34722 6.53555 6.66706 6.79366 6.83049 6.87176 7.03353 7.16911 7.40881 7.50997 7.64228 7.68991 7.77914 7.97778 8.03713 8.52093 9.03691 9.63953 11.12394 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.041099 B = 0.003394 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.119973 B = 8248.601008 C = 8398.427690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.048 3.952 10 H 0.024 0.976 11 C -0.092 4.092 12 C -0.110 4.110 13 C 0.076 3.924 14 H 0.041 0.959 15 N -0.677 5.677 16 C 0.140 3.860 17 C -0.211 4.211 18 C 0.104 3.896 19 N -0.621 5.621 20 H 0.425 0.575 21 C 0.392 3.608 22 N -0.736 5.736 23 S -0.026 6.026 24 C -0.112 4.112 25 H 0.259 0.741 26 H 0.035 0.965 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.038 0.962 30 H 0.339 0.661 31 H 0.090 0.910 32 H 0.039 0.961 33 H 0.186 0.814 34 H 0.358 0.642 35 H 0.040 0.960 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.089 -16.829 6.769 18.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.029 3.971 10 H 0.042 0.958 11 C -0.130 4.130 12 C -0.148 4.148 13 C -0.033 4.033 14 H 0.059 0.941 15 N -0.308 5.308 16 C 0.009 3.991 17 C -0.333 4.333 18 C -0.027 4.027 19 N -0.246 5.246 20 H 0.264 0.736 21 C 0.003 3.997 22 N -0.379 5.379 23 S 0.210 5.790 24 C -0.150 4.150 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.157 0.843 31 H 0.108 0.892 32 H 0.057 0.943 33 H 0.202 0.798 34 H 0.178 0.822 35 H 0.059 0.941 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.494 -17.188 6.829 19.033 hybrid contribution 0.089 0.933 -0.122 0.945 sum 4.583 -16.255 6.706 18.172 Atomic orbital electron populations 1.69978 1.05837 1.26449 1.50653 1.24981 0.94832 0.98961 0.95366 0.86722 0.79636 0.83423 0.78590 1.20379 1.21420 1.20295 1.21228 0.92705 0.90523 1.50451 0.92777 1.19168 0.92318 0.91621 0.93994 0.95806 1.22028 0.97747 0.95027 0.98234 1.22424 0.98165 0.96801 0.97419 1.22736 0.92702 0.92456 0.95397 0.94073 1.60656 1.12858 1.12348 1.44936 1.20242 0.92213 0.87872 0.98776 1.23025 1.09052 1.06137 0.95073 1.20538 0.91387 0.93433 0.97312 1.41675 1.37582 1.34263 1.11064 0.73597 1.24063 0.93650 0.92838 0.89188 1.68952 1.18789 1.14002 1.36146 1.85792 1.41452 1.39357 1.12351 1.22675 1.00370 0.95880 0.96096 0.93113 0.94626 0.91737 0.91766 0.94300 0.84344 0.89198 0.94300 0.79757 0.82213 0.94130 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 12.33 55.43 0.68 -24.82 16 2 C 0.06 1.65 5.07 -17.81 -0.09 1.56 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -13.91 8.34 -34.44 -0.29 -14.19 16 8 H 0.05 1.46 7.55 -52.49 -0.40 1.06 16 9 C 0.05 1.17 2.84 -90.66 -0.26 0.91 16 10 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 11 C -0.09 -2.10 5.56 -25.62 -0.14 -2.24 16 12 C -0.11 -2.01 6.44 -25.07 -0.16 -2.17 16 13 C 0.08 1.28 3.20 -65.53 -0.21 1.07 16 14 H 0.04 0.68 7.91 -51.93 -0.41 0.27 16 15 N -0.68 -9.47 6.36 -105.69 -0.67 -10.14 16 16 C 0.14 1.59 6.01 -4.97 -0.03 1.56 16 17 C -0.21 -2.18 5.94 -36.03 -0.21 -2.39 16 18 C 0.10 0.90 11.14 -17.17 -0.19 0.71 16 19 N -0.62 -5.38 5.66 -13.88 -0.08 -5.46 16 20 H 0.42 2.78 8.96 -40.82 -0.37 2.41 16 21 C 0.39 4.22 8.75 -89.34 -0.78 3.44 16 22 N -0.74 -8.38 14.18 30.43 0.43 -7.95 16 23 S -0.03 -0.27 23.35 -107.50 -2.51 -2.78 16 24 C -0.11 -2.24 5.81 -24.88 -0.14 -2.39 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 1.65 7.17 -51.93 -0.37 1.28 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.34 4.69 8.50 -39.29 -0.33 4.36 16 31 H 0.09 0.96 8.13 -51.93 -0.42 0.54 16 32 H 0.04 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.19 1.12 8.06 -52.48 -0.42 0.70 16 34 H 0.36 3.61 8.92 -40.82 -0.36 3.24 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.37 7.68 -51.93 -0.40 0.97 16 LS Contribution 311.84 15.07 4.70 4.70 Total: -1.00 -29.46 311.84 -10.13 -39.59 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -5.16 Total: 4.76 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -2.51 Total: -14.14 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 0.36 Total: -48.38 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -0.27 SS G_CDS: -2.51 Total: -2.78 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.46 -10.13 -39.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378848952.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.018 kcal (2) G-P(sol) polarization free energy of solvation -29.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds