Wall clock time and date at job start Mon Mar 30 2020 04:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00122 * 2 1 4 4 H 1.48506 * 109.47156 * 239.99675 * 3 2 1 5 5 H 1.48496 * 109.47307 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47100 * 119.99828 * 3 2 1 7 7 C 1.37883 * 119.99345 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99279 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00158 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.01671 * 59.94062 * 9 7 2 11 11 C 1.53869 * 110.03004 * 298.54124 * 9 7 2 12 12 C 1.54266 * 106.60031 * 240.66866 * 11 9 7 13 13 C 1.54894 * 104.31305 * 336.32486 * 12 11 9 14 14 H 1.08993 * 110.76071 * 279.69749 * 13 12 11 15 15 N 1.46892 * 110.75562 * 156.31936 * 13 12 11 16 16 C 1.46896 * 111.00038 * 86.45635 * 15 13 12 17 17 C 1.50707 * 109.47676 * 179.97438 * 16 15 13 18 18 C 1.31047 * 125.01418 * 89.99557 * 17 16 15 19 19 N 1.36582 * 115.98169 * 180.02562 * 18 17 16 20 20 H 0.97001 * 122.73960 * 180.02562 * 19 18 17 21 21 C 1.35696 * 114.52879 * 0.02562 * 19 18 17 22 22 N 1.31025 * 125.60100 * 180.02562 * 21 19 18 23 23 S 1.75896 * 125.01195 * 269.70025 * 17 16 15 24 24 C 1.54266 * 110.07004 * 181.35410 * 9 7 2 25 25 H 0.96997 * 119.99897 * 0.02562 * 1 2 3 26 26 H 1.09001 * 110.02983 * 121.38618 * 11 9 7 27 27 H 1.08995 * 110.03881 * 359.95810 * 11 9 7 28 28 H 1.09002 * 110.48629 * 95.07240 * 12 11 9 29 29 H 1.08998 * 110.48744 * 217.58143 * 12 11 9 30 30 H 1.00906 * 111.00506 * 210.41191 * 15 13 12 31 31 H 1.08999 * 109.47539 * 299.99883 * 16 15 13 32 32 H 1.09003 * 109.46898 * 59.99768 * 16 15 13 33 33 H 1.08005 * 122.00734 * 359.97438 * 18 17 16 34 34 H 0.96995 * 120.00141 * 180.02562 * 22 21 19 35 35 H 1.09005 * 110.48526 * 261.59666 * 24 9 7 36 36 H 1.09007 * 110.48724 * 24.10150 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6204 -2.5660 -0.8861 11 6 0.3887 -2.6099 1.2702 12 6 0.8844 -3.8562 2.0323 13 6 1.5460 -4.7343 0.9412 14 1 0.7924 -5.2884 0.3818 15 7 2.5320 -5.6472 1.5346 16 6 1.8920 -6.8876 1.9926 17 6 2.9323 -7.7975 2.5935 18 6 3.2824 -7.8087 3.8563 19 7 4.2476 -8.7112 4.2017 20 1 4.5795 -8.8031 5.1085 21 6 4.7045 -9.4688 3.1728 22 7 5.6249 -10.3974 3.2593 23 16 3.8506 -9.0062 1.7048 24 6 2.2406 -3.6821 0.0354 25 1 -0.4850 0.8400 -0.0004 26 1 -0.6603 -2.7304 0.9997 27 1 0.5158 -1.7202 1.8867 28 1 1.6154 -3.5742 2.7902 29 1 0.0463 -4.3825 2.4891 30 1 3.2792 -5.8440 0.8857 31 1 1.1379 -6.6518 2.7433 32 1 1.4189 -7.3861 1.1465 33 1 2.8350 -7.1437 4.5803 34 1 5.8913 -10.8914 2.4683 35 1 2.3919 -4.0825 -0.9670 36 1 3.1914 -3.3713 0.4686 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378848952.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:08 Heat of formation + Delta-G solvation = 16.000931 kcal Electronic energy + Delta-G solvation = -17501.598531 eV Core-core repulsion = 14724.801231 eV Total energy + Delta-G solvation = -2776.797300 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.65170 -39.29074 -36.42830 -34.87475 -33.89073 -31.35385 -29.79617 -28.26213 -25.96542 -25.19440 -24.72052 -21.15971 -20.85496 -20.30561 -19.69366 -18.19322 -18.04123 -16.80180 -16.59680 -16.37591 -16.10056 -15.91351 -15.30611 -14.73590 -14.51571 -14.21789 -13.97691 -13.39623 -13.28752 -12.90845 -12.59278 -12.34888 -12.13988 -11.88353 -11.76098 -11.60987 -11.56573 -11.42006 -10.97154 -10.66276 -10.57176 -10.53742 -10.40520 -9.27813 -8.37206 -8.08595 -6.17816 0.27434 0.59979 0.90046 1.37727 1.43064 1.44035 1.51551 1.98884 2.45966 3.22091 3.39614 3.86065 4.04526 4.16567 4.33737 4.42178 4.50200 4.56535 4.74904 4.82629 4.94196 4.94681 5.05663 5.16511 5.23744 5.29936 5.53383 5.57461 5.62838 5.72748 5.99259 6.01884 6.23326 6.26636 6.45412 6.51241 6.91977 6.94666 7.49090 8.99936 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.041099 B = 0.003394 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.119973 B = 8248.601008 C = 8398.427690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.010 3.990 3 Si 0.950 3.050 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.529 4.529 8 H 0.051 0.949 9 C 0.037 3.963 10 H -0.010 1.010 11 C -0.085 4.085 12 C -0.097 4.097 13 C 0.094 3.906 14 H 0.049 0.951 15 N -0.676 5.676 16 C 0.145 3.855 17 C -0.232 4.232 18 C 0.124 3.876 19 N -0.612 5.612 20 H 0.436 0.564 21 C 0.387 3.613 22 N -0.753 5.753 23 S -0.041 6.041 24 C -0.105 4.105 25 H 0.259 0.741 26 H 0.021 0.979 27 H 0.030 0.970 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.341 0.659 31 H 0.103 0.897 32 H 0.039 0.961 33 H 0.216 0.784 34 H 0.361 0.639 35 H 0.048 0.952 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.738 -17.622 8.084 19.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.189 4.189 3 Si 0.776 3.224 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.567 4.567 8 H 0.070 0.930 9 C 0.018 3.982 10 H 0.008 0.992 11 C -0.124 4.124 12 C -0.135 4.135 13 C -0.016 4.016 14 H 0.067 0.933 15 N -0.307 5.307 16 C 0.014 3.986 17 C -0.354 4.354 18 C -0.008 4.008 19 N -0.238 5.238 20 H 0.277 0.723 21 C -0.003 4.003 22 N -0.397 5.397 23 S 0.195 5.805 24 C -0.143 4.143 25 H 0.068 0.932 26 H 0.040 0.960 27 H 0.049 0.951 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.159 0.841 31 H 0.121 0.879 32 H 0.057 0.943 33 H 0.233 0.767 34 H 0.181 0.819 35 H 0.067 0.933 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.161 -17.998 8.159 20.424 hybrid contribution -0.113 1.160 -0.533 1.282 sum 5.047 -16.838 7.626 19.161 Atomic orbital electron populations 1.70102 1.07183 1.27113 1.51549 1.25747 0.95649 1.02333 0.95137 0.85732 0.78453 0.79372 0.78837 1.19789 1.21127 1.19558 1.21619 0.92852 0.92095 1.50145 0.93036 1.19194 0.93012 0.92686 0.93286 0.99174 1.21828 0.96863 0.96099 0.97578 1.22276 0.99096 0.94927 0.97209 1.22411 0.92879 0.92178 0.94101 0.93348 1.60584 1.12199 1.13503 1.44381 1.20222 0.92545 0.86686 0.99107 1.22912 1.10065 1.06830 0.95577 1.20980 0.89994 0.92486 0.97324 1.41760 1.37167 1.33629 1.11277 0.72279 1.24206 0.93501 0.92868 0.89695 1.68962 1.19452 1.14664 1.36627 1.85846 1.41864 1.39947 1.12840 1.22494 0.98968 0.95268 0.97524 0.93219 0.95980 0.95119 0.91798 0.91551 0.84113 0.87895 0.94284 0.76747 0.81875 0.93347 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.93 12.33 21.45 0.26 -53.67 16 2 C 0.01 0.55 5.07 84.65 0.43 0.98 16 3 Si 0.95 43.93 29.54 68.60 2.03 45.95 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.53 -29.30 8.34 25.60 0.21 -29.09 16 8 H 0.05 2.80 7.55 -2.91 -0.02 2.78 16 9 C 0.04 1.85 2.84 -10.82 -0.03 1.82 16 10 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 11 C -0.08 -3.94 5.56 31.32 0.17 -3.77 16 12 C -0.10 -3.37 6.44 31.67 0.20 -3.17 16 13 C 0.09 2.97 3.20 46.33 0.15 3.12 16 14 H 0.05 1.49 7.91 -2.39 -0.02 1.47 16 15 N -0.68 -17.09 6.36 -488.30 -3.10 -20.19 16 16 C 0.14 2.85 6.01 85.56 0.51 3.36 16 17 C -0.23 -4.14 5.94 25.60 0.15 -3.99 16 18 C 0.12 1.69 11.14 83.87 0.93 2.63 16 19 N -0.61 -8.94 5.66 -197.83 -1.12 -10.06 16 20 H 0.44 4.45 8.96 -92.71 -0.83 3.62 16 21 C 0.39 7.62 8.75 179.90 1.57 9.20 16 22 N -0.75 -16.21 14.18 -57.62 -0.82 -17.03 16 23 S -0.04 -0.81 23.35 -56.49 -1.32 -2.13 16 24 C -0.10 -4.12 5.81 31.79 0.18 -3.93 16 25 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 26 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.03 1.59 7.17 -2.39 -0.02 1.57 16 28 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.34 8.65 8.50 -89.69 -0.76 7.89 16 31 H 0.10 1.78 8.13 -2.39 -0.02 1.76 16 32 H 0.04 0.79 8.09 -2.39 -0.02 0.77 16 33 H 0.22 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.36 7.01 8.92 -92.71 -0.83 6.18 16 35 H 0.05 1.79 8.14 -2.38 -0.02 1.78 16 36 H 0.06 2.41 7.68 -2.38 -0.02 2.39 16 Total: -1.00 -64.21 311.84 -0.88 -65.08 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -1.31 Total: 14.88 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 4.50 Total: -22.84 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -4.78 Total: -100.95 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -1.32 Total: -2.13 kcal Total: -64.21 -0.88 -65.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378848952.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.084 kcal (2) G-P(sol) polarization free energy of solvation -64.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds