Wall clock time and date at job start Mon Mar 30 2020 04:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99546 * 2 1 4 4 H 1.48499 * 109.46663 * 239.99624 * 3 2 1 5 5 H 1.48493 * 109.47207 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46854 * 120.00061 * 3 2 1 7 7 C 1.37870 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00045 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00276 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.01318 * 301.38436 * 9 7 2 11 11 C 1.53876 * 110.07532 * 62.80533 * 9 7 2 12 12 C 1.54463 * 106.68143 * 119.46717 * 11 9 7 13 13 C 1.54888 * 104.10641 * 23.34358 * 12 11 9 14 14 H 1.09000 * 110.75395 * 80.70243 * 13 12 11 15 15 N 1.46898 * 110.75806 * 203.89506 * 13 12 11 16 16 C 1.46906 * 110.99888 * 271.06354 * 15 13 12 17 17 C 1.50699 * 109.47140 * 179.97438 * 16 15 13 18 18 C 1.31048 * 125.01437 * 89.71902 * 17 16 15 19 19 N 1.36586 * 115.98009 * 179.82684 * 18 17 16 20 20 H 0.96999 * 122.73532 * 180.25954 * 19 18 17 21 21 C 1.35688 * 114.52840 * 0.46078 * 19 18 17 22 22 N 1.31029 * 125.59856 * 179.78060 * 21 19 18 23 23 S 1.75899 * 125.01274 * 270.02377 * 17 16 15 24 24 C 1.54269 * 110.03293 * 180.02562 * 9 7 2 25 25 H 0.96998 * 120.00295 * 0.02562 * 1 2 3 26 26 H 1.08992 * 110.03004 * 238.59457 * 11 9 7 27 27 H 1.08996 * 110.02710 * 0.02562 * 11 9 7 28 28 H 1.09002 * 110.40486 * 264.75349 * 12 11 9 29 29 H 1.08999 * 110.65910 * 142.05651 * 12 11 9 30 30 H 1.00904 * 110.99913 * 35.01420 * 15 13 12 31 31 H 1.09004 * 109.47040 * 299.99934 * 16 15 13 32 32 H 1.09000 * 109.47033 * 59.99886 * 16 15 13 33 33 H 1.07999 * 122.01106 * 0.02562 * 18 17 16 34 34 H 0.96997 * 119.99843 * 180.02562 * 22 21 19 35 35 H 1.09000 * 110.48861 * 98.37438 * 24 9 7 36 36 H 1.09001 * 110.59891 * 335.78644 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6023 -2.5553 0.8746 11 6 0.4154 -2.6266 -1.2853 12 6 0.9242 -3.8854 -2.0217 13 6 1.5680 -4.7425 -0.9037 14 1 0.8060 -5.2929 -0.3518 15 7 2.5686 -5.6612 -1.4628 16 6 1.9515 -6.9345 -1.8581 17 6 3.0061 -7.8487 -2.4264 18 6 3.7222 -8.6959 -1.7286 19 7 4.6257 -9.4387 -2.4339 20 1 5.2030 -10.0971 -2.0167 21 6 4.6527 -9.1776 -3.7651 22 7 5.4357 -9.7584 -4.6406 23 16 3.4628 -7.9308 -4.1231 24 6 2.2420 -3.6814 0.0018 25 1 -0.4850 0.8400 -0.0004 26 1 -0.6388 -2.7446 -1.0352 27 1 0.5550 -1.7445 -1.9101 28 1 1.6685 -3.6131 -2.7701 29 1 0.0956 -4.4217 -2.4842 30 1 3.0539 -5.2380 -2.2397 31 1 1.4952 -7.4033 -0.9862 32 1 1.1871 -6.7490 -2.6126 33 1 3.6028 -8.8026 -0.6605 34 1 5.3870 -9.5077 -5.5763 35 1 2.3724 -4.0689 1.0123 36 1 3.2019 -3.3777 -0.4160 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378848953.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:12 Heat of formation + Delta-G solvation = 34.765618 kcal Electronic energy + Delta-G solvation = -17505.906915 eV Core-core repulsion = 14729.923313 eV Total energy + Delta-G solvation = -2775.983602 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.90964 -37.89751 -35.20443 -33.72497 -32.17716 -30.26144 -27.99877 -26.82662 -24.68162 -24.20998 -23.18819 -20.21050 -19.46357 -19.00608 -18.74121 -17.29247 -16.25311 -15.79452 -15.46058 -15.03627 -14.66450 -14.34757 -14.10957 -13.74976 -13.23700 -12.77648 -12.30611 -12.15742 -11.62171 -11.34532 -11.03619 -10.95664 -10.85821 -10.60858 -10.50450 -10.23714 -9.84410 -9.79346 -9.71481 -9.58463 -9.14497 -8.66526 -8.34013 -8.00867 -7.58224 -5.97169 -3.99815 1.07643 1.37732 1.65149 2.12643 2.69071 3.34103 3.38727 3.41530 4.43978 4.50864 4.71351 5.05412 5.16053 5.29309 5.34840 5.52593 5.62598 5.65982 5.77737 5.90545 6.22396 6.34362 6.50393 6.64443 6.72640 6.83971 6.87139 7.05722 7.13400 7.39326 7.47902 7.65049 7.69609 7.76171 7.96206 8.03985 8.52453 9.04019 9.63916 11.12151 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.039077 B = 0.003442 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.365365 B = 8131.963337 C = 8279.408696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.044 3.956 10 H 0.026 0.974 11 C -0.088 4.088 12 C -0.153 4.153 13 C 0.079 3.921 14 H 0.075 0.925 15 N -0.679 5.679 16 C 0.139 3.861 17 C -0.210 4.210 18 C 0.103 3.897 19 N -0.621 5.621 20 H 0.424 0.576 21 C 0.391 3.609 22 N -0.736 5.736 23 S -0.023 6.023 24 C -0.098 4.098 25 H 0.259 0.741 26 H 0.036 0.964 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.342 0.658 31 H 0.088 0.912 32 H 0.041 0.959 33 H 0.185 0.815 34 H 0.358 0.642 35 H 0.045 0.955 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.442 -17.692 -4.835 18.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.025 3.975 10 H 0.044 0.956 11 C -0.127 4.127 12 C -0.192 4.192 13 C -0.030 4.030 14 H 0.093 0.907 15 N -0.309 5.309 16 C 0.008 3.992 17 C -0.333 4.333 18 C -0.028 4.028 19 N -0.246 5.246 20 H 0.264 0.736 21 C 0.002 3.998 22 N -0.379 5.379 23 S 0.214 5.786 24 C -0.136 4.136 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.160 0.840 31 H 0.106 0.894 32 H 0.059 0.941 33 H 0.202 0.798 34 H 0.178 0.822 35 H 0.064 0.936 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.791 -17.875 -5.303 19.251 hybrid contribution 0.034 1.035 -0.095 1.040 sum 4.825 -16.840 -5.398 18.330 Atomic orbital electron populations 1.69970 1.05849 1.26454 1.50696 1.24985 0.94826 0.98969 0.95366 0.86731 0.79647 0.83455 0.78600 1.20348 1.21425 1.20312 1.21239 0.92726 0.90542 1.50393 0.92758 1.19246 0.92605 0.91953 0.93705 0.95577 1.22022 0.97903 0.94324 0.98452 1.23127 0.99288 0.98892 0.97914 1.22733 0.92366 0.92087 0.95797 0.90713 1.60742 1.28856 1.04174 1.37145 1.20236 0.91208 0.89271 0.98532 1.23044 1.08748 1.07257 0.94211 1.20515 0.90476 0.93169 0.98672 1.41668 1.38541 1.39979 1.04414 0.73636 1.24073 0.93713 0.93104 0.88951 1.68954 1.27800 1.33646 1.07516 1.85857 1.40210 1.43392 1.09188 1.22425 0.99642 0.94711 0.96798 0.93118 0.94517 0.91958 0.92691 0.93946 0.84009 0.89365 0.94077 0.79812 0.82200 0.93579 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.57 12.45 55.43 0.69 -24.88 16 2 C 0.06 1.65 5.09 -17.82 -0.09 1.56 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -13.90 8.32 -34.44 -0.29 -14.18 16 8 H 0.05 1.46 7.54 -52.48 -0.40 1.07 16 9 C 0.04 1.07 2.81 -90.65 -0.26 0.81 16 10 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 11 C -0.09 -2.01 5.61 -25.51 -0.14 -2.16 16 12 C -0.15 -2.76 6.43 -24.97 -0.16 -2.92 16 13 C 0.08 1.31 3.19 -65.70 -0.21 1.10 16 14 H 0.07 1.19 7.86 -51.93 -0.41 0.78 16 15 N -0.68 -9.42 6.36 -105.86 -0.67 -10.09 16 16 C 0.14 1.55 6.02 -4.97 -0.03 1.52 16 17 C -0.21 -2.16 5.94 -36.04 -0.21 -2.37 16 18 C 0.10 0.86 11.14 -17.16 -0.19 0.67 16 19 N -0.62 -5.30 5.66 -13.88 -0.08 -5.38 16 20 H 0.42 2.70 8.96 -40.82 -0.37 2.33 16 21 C 0.39 4.23 8.75 -89.34 -0.78 3.45 16 22 N -0.74 -8.45 14.18 30.43 0.43 -8.02 16 23 S -0.02 -0.25 23.35 -107.50 -2.51 -2.76 16 24 C -0.10 -1.96 6.04 -25.05 -0.15 -2.11 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 1.59 7.26 -51.93 -0.38 1.21 16 28 H 0.05 0.99 7.79 -51.93 -0.40 0.58 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.34 4.92 8.25 -39.29 -0.32 4.59 16 31 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.19 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.36 3.67 8.92 -40.82 -0.36 3.30 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.23 7.68 -51.93 -0.40 0.83 16 LS Contribution 311.63 15.07 4.70 4.70 Total: -1.00 -29.50 311.63 -10.11 -39.60 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -5.13 Total: 5.20 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -2.51 Total: -14.63 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.37 Total: -48.38 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -0.25 SS G_CDS: -2.51 Total: -2.76 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.50 -10.11 -39.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378848953.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.370 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds