Wall clock time and date at job start Mon Mar 30 2020 04:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99546 * 2 1 4 4 H 1.48499 * 109.46663 * 239.99624 * 3 2 1 5 5 H 1.48493 * 109.47207 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46854 * 120.00061 * 3 2 1 7 7 C 1.37870 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00045 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00276 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.01318 * 301.38436 * 9 7 2 11 11 C 1.53876 * 110.07532 * 62.80533 * 9 7 2 12 12 C 1.54463 * 106.68143 * 119.46717 * 11 9 7 13 13 C 1.54888 * 104.10641 * 23.34358 * 12 11 9 14 14 H 1.09000 * 110.75395 * 80.70243 * 13 12 11 15 15 N 1.46898 * 110.75806 * 203.89506 * 13 12 11 16 16 C 1.46906 * 110.99888 * 271.06354 * 15 13 12 17 17 C 1.50699 * 109.47140 * 179.97438 * 16 15 13 18 18 C 1.31048 * 125.01437 * 89.71902 * 17 16 15 19 19 N 1.36586 * 115.98009 * 179.82684 * 18 17 16 20 20 H 0.96999 * 122.73532 * 180.25954 * 19 18 17 21 21 C 1.35688 * 114.52840 * 0.46078 * 19 18 17 22 22 N 1.31029 * 125.59856 * 179.78060 * 21 19 18 23 23 S 1.75899 * 125.01274 * 270.02377 * 17 16 15 24 24 C 1.54269 * 110.03293 * 180.02562 * 9 7 2 25 25 H 0.96998 * 120.00295 * 0.02562 * 1 2 3 26 26 H 1.08992 * 110.03004 * 238.59457 * 11 9 7 27 27 H 1.08996 * 110.02710 * 0.02562 * 11 9 7 28 28 H 1.09002 * 110.40486 * 264.75349 * 12 11 9 29 29 H 1.08999 * 110.65910 * 142.05651 * 12 11 9 30 30 H 1.00904 * 110.99913 * 35.01420 * 15 13 12 31 31 H 1.09004 * 109.47040 * 299.99934 * 16 15 13 32 32 H 1.09000 * 109.47033 * 59.99886 * 16 15 13 33 33 H 1.07999 * 122.01106 * 0.02562 * 18 17 16 34 34 H 0.96997 * 119.99843 * 180.02562 * 22 21 19 35 35 H 1.09000 * 110.48861 * 98.37438 * 24 9 7 36 36 H 1.09001 * 110.59891 * 335.78644 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6023 -2.5553 0.8746 11 6 0.4154 -2.6266 -1.2853 12 6 0.9242 -3.8854 -2.0217 13 6 1.5680 -4.7425 -0.9037 14 1 0.8060 -5.2929 -0.3518 15 7 2.5686 -5.6612 -1.4628 16 6 1.9515 -6.9345 -1.8581 17 6 3.0061 -7.8487 -2.4264 18 6 3.7222 -8.6959 -1.7286 19 7 4.6257 -9.4387 -2.4339 20 1 5.2030 -10.0971 -2.0167 21 6 4.6527 -9.1776 -3.7651 22 7 5.4357 -9.7584 -4.6406 23 16 3.4628 -7.9308 -4.1231 24 6 2.2420 -3.6814 0.0018 25 1 -0.4850 0.8400 -0.0004 26 1 -0.6388 -2.7446 -1.0352 27 1 0.5550 -1.7445 -1.9101 28 1 1.6685 -3.6131 -2.7701 29 1 0.0956 -4.4217 -2.4842 30 1 3.0539 -5.2380 -2.2397 31 1 1.4952 -7.4033 -0.9862 32 1 1.1871 -6.7490 -2.6126 33 1 3.6028 -8.8026 -0.6605 34 1 5.3870 -9.5077 -5.5763 35 1 2.3724 -4.0689 1.0123 36 1 3.2019 -3.3777 -0.4160 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378848953.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:12 Heat of formation + Delta-G solvation = 15.228866 kcal Electronic energy + Delta-G solvation = -17506.754092 eV Core-core repulsion = 14729.923313 eV Total energy + Delta-G solvation = -2776.830779 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.64761 -39.36582 -36.40108 -34.88304 -33.87318 -31.34526 -29.72755 -28.27390 -26.01879 -25.18755 -24.59941 -21.42333 -20.82842 -20.33269 -19.68435 -18.25746 -18.03475 -16.77557 -16.62561 -16.49412 -16.02694 -15.67773 -15.27718 -14.65589 -14.40289 -14.27858 -13.82608 -13.39106 -13.33406 -12.92845 -12.65224 -12.40882 -12.34227 -11.90534 -11.89963 -11.68328 -11.55004 -11.37627 -10.97204 -10.68136 -10.57781 -10.53321 -10.43056 -9.17899 -8.36966 -8.09289 -6.18399 0.27838 0.60688 0.91699 1.38389 1.42111 1.43015 1.50516 1.99571 2.45158 3.21284 3.41071 3.89466 4.07722 4.12524 4.33118 4.37314 4.51156 4.57596 4.75040 4.81319 4.91785 4.97031 5.04867 5.09668 5.23434 5.30430 5.49274 5.53221 5.61992 5.70032 5.98837 6.01031 6.24032 6.25687 6.44684 6.51316 6.91769 6.94902 7.48765 8.99209 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.039077 B = 0.003442 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.365365 B = 8131.963337 C = 8279.408696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.009 3.991 3 Si 0.949 3.051 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.528 4.528 8 H 0.051 0.949 9 C 0.035 3.965 10 H -0.006 1.006 11 C -0.082 4.082 12 C -0.141 4.141 13 C 0.098 3.902 14 H 0.089 0.911 15 N -0.675 5.675 16 C 0.143 3.857 17 C -0.232 4.232 18 C 0.125 3.875 19 N -0.612 5.612 20 H 0.436 0.564 21 C 0.387 3.613 22 N -0.753 5.753 23 S -0.047 6.047 24 C -0.090 4.090 25 H 0.259 0.741 26 H 0.023 0.977 27 H 0.026 0.974 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.339 0.661 31 H 0.108 0.892 32 H 0.038 0.962 33 H 0.219 0.781 34 H 0.360 0.640 35 H 0.052 0.948 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.336 -19.209 -4.534 20.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.189 4.189 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.567 4.567 8 H 0.070 0.930 9 C 0.016 3.984 10 H 0.012 0.988 11 C -0.121 4.121 12 C -0.180 4.180 13 C -0.011 4.011 14 H 0.107 0.893 15 N -0.305 5.305 16 C 0.013 3.987 17 C -0.354 4.354 18 C -0.007 4.007 19 N -0.238 5.238 20 H 0.278 0.722 21 C -0.002 4.002 22 N -0.397 5.397 23 S 0.189 5.811 24 C -0.128 4.128 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.157 0.843 31 H 0.126 0.874 32 H 0.056 0.944 33 H 0.236 0.764 34 H 0.181 0.819 35 H 0.071 0.929 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.707 -19.420 -4.996 20.849 hybrid contribution -0.234 1.471 -0.161 1.499 sum 5.472 -17.949 -5.156 19.460 Atomic orbital electron populations 1.70093 1.07192 1.27093 1.51669 1.25749 0.95638 1.02340 0.95181 0.85749 0.78469 0.79436 0.78851 1.19735 1.21169 1.19589 1.21642 0.92877 0.92156 1.49984 0.93028 1.19260 0.93190 0.92950 0.93032 0.98757 1.21811 0.97089 0.95387 0.97770 1.23025 1.00044 0.96898 0.98081 1.22427 0.92542 0.91688 0.94489 0.89253 1.60669 1.27933 1.04494 1.37371 1.20242 0.91268 0.87928 0.99282 1.22938 1.10162 1.08781 0.93541 1.21002 0.88579 0.91252 0.99853 1.41761 1.38454 1.39925 1.03664 0.72246 1.24205 0.93421 0.92900 0.89705 1.68965 1.28473 1.34334 1.07977 1.85942 1.40671 1.43790 1.10656 1.22244 0.98140 0.94234 0.98180 0.93249 0.95847 0.95536 0.92602 0.91727 0.84296 0.87401 0.94408 0.76443 0.81928 0.92894 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.20 12.45 21.44 0.27 -53.93 16 2 C 0.01 0.52 5.09 84.65 0.43 0.95 16 3 Si 0.95 44.09 29.54 68.60 2.03 46.12 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.53 -29.28 8.32 25.60 0.21 -29.07 16 8 H 0.05 2.81 7.54 -2.91 -0.02 2.79 16 9 C 0.03 1.72 2.81 -10.81 -0.03 1.69 16 10 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 11 C -0.08 -3.80 5.61 31.39 0.18 -3.62 16 12 C -0.14 -4.92 6.43 31.74 0.20 -4.72 16 13 C 0.10 3.05 3.19 46.22 0.15 3.20 16 14 H 0.09 2.57 7.86 -2.39 -0.02 2.55 16 15 N -0.68 -16.85 6.36 -488.84 -3.11 -19.96 16 16 C 0.14 2.74 6.02 85.56 0.52 3.25 16 17 C -0.23 -4.10 5.94 25.60 0.15 -3.95 16 18 C 0.12 1.62 11.14 83.87 0.93 2.55 16 19 N -0.61 -8.70 5.66 -197.83 -1.12 -9.82 16 20 H 0.44 4.22 8.96 -92.71 -0.83 3.39 16 21 C 0.39 7.68 8.75 179.90 1.57 9.25 16 22 N -0.75 -16.41 14.18 -57.63 -0.82 -17.23 16 23 S -0.05 -0.95 23.35 -56.49 -1.32 -2.27 16 24 C -0.09 -3.52 6.04 31.68 0.19 -3.33 16 25 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 26 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.03 1.38 7.26 -2.39 -0.02 1.36 16 28 H 0.06 1.94 7.79 -2.39 -0.02 1.92 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.34 8.99 8.25 -89.69 -0.74 8.25 16 31 H 0.11 1.67 8.08 -2.38 -0.02 1.65 16 32 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.22 1.32 8.06 -2.91 -0.02 1.29 16 34 H 0.36 7.17 8.92 -92.71 -0.83 6.34 16 35 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.05 2.05 7.68 -2.39 -0.02 2.03 16 Total: -1.00 -64.71 311.63 -0.85 -65.56 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -1.28 Total: 15.32 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: 4.51 Total: -23.80 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -4.78 Total: -100.93 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -0.95 SS G_CDS: -1.32 Total: -2.27 kcal Total: -64.71 -0.85 -65.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378848953.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.784 kcal (2) G-P(sol) polarization free energy of solvation -64.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds