Wall clock time and date at job start Mon Mar 30 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42891 * 109.47700 * 2 1 4 4 C 1.53002 * 109.47001 * 119.99865 * 2 1 3 5 5 N 1.46902 * 109.47275 * 173.85547 * 4 2 1 6 6 C 1.46894 * 111.00270 * 198.04641 * 5 4 2 7 7 C 1.50702 * 109.47294 * 163.34174 * 6 5 4 8 8 H 1.07995 * 119.99981 * 355.11760 * 7 6 5 9 9 C 1.37874 * 120.00036 * 175.11657 * 7 6 5 10 10 N 1.31516 * 120.00368 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00226 * 180.02562 * 9 7 6 12 12 H 1.48509 * 109.46678 * 0.02562 * 11 9 7 13 13 H 1.48495 * 109.47314 * 119.99922 * 11 9 7 14 14 H 1.48498 * 109.47247 * 240.00704 * 11 9 7 15 15 C 1.46904 * 110.99538 * 74.09116 * 5 4 2 16 16 C 1.52998 * 117.49488 * 127.15624 * 15 5 4 17 17 C 1.52997 * 117.49910 * 58.53237 * 15 5 4 18 18 C 1.53004 * 109.46975 * 239.99537 * 2 1 3 19 19 F 1.39903 * 109.47090 * 300.00379 * 18 2 1 20 20 F 1.39896 * 109.46985 * 60.00239 * 18 2 1 21 21 F 1.39901 * 109.47445 * 180.02562 * 18 2 1 22 22 H 1.09007 * 109.46858 * 304.83516 * 1 2 3 23 23 H 1.08999 * 109.46877 * 64.82699 * 1 2 3 24 24 H 1.08999 * 109.47715 * 184.83191 * 1 2 3 25 25 H 0.96702 * 114.00287 * 190.51351 * 3 2 1 26 26 H 1.09001 * 109.47303 * 53.85927 * 4 2 1 27 27 H 1.08994 * 109.47345 * 293.85927 * 4 2 1 28 28 H 1.09000 * 109.47002 * 283.34324 * 6 5 4 29 29 H 1.09004 * 109.47150 * 43.34146 * 6 5 4 30 30 H 0.96993 * 120.00754 * 179.97438 * 10 9 7 31 31 H 1.08999 * 115.54978 * 272.85636 * 15 5 4 32 32 H 1.08996 * 117.50193 * 359.97438 * 16 15 5 33 33 H 1.09005 * 117.49954 * 145.02368 * 16 15 5 34 34 H 1.08992 * 117.49982 * 214.97739 * 17 15 5 35 35 H 1.09007 * 117.49981 * 359.97438 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3471 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5015 -0.8510 1.1775 6 6 3.9847 -1.8821 2.1055 7 6 5.3894 -2.2779 1.7295 8 1 5.8458 -1.8691 0.8402 9 6 6.0917 -3.1619 2.5209 10 7 5.5357 -3.6601 3.6036 11 14 7.8331 -3.6520 2.0552 12 1 8.2247 -2.9568 0.8027 13 1 8.7641 -3.2672 3.1462 14 1 7.8949 -5.1209 1.8467 15 6 4.1576 0.4380 1.4346 16 6 5.2378 0.4772 2.5174 17 6 3.8736 1.1205 2.7742 18 6 2.0400 -0.7214 -1.2492 19 9 1.5735 -2.0404 -1.2491 20 9 1.5737 -0.0619 -2.3915 21 9 3.4390 -0.7219 -1.2490 22 1 -0.3633 0.5871 0.8436 23 1 -0.3633 0.4371 -0.9301 24 1 -0.3634 -1.0240 0.0866 25 1 2.9565 1.4284 -0.1612 26 1 1.5897 -1.7123 1.3060 27 1 1.7692 -0.1479 2.1358 28 1 3.9779 -1.4882 3.1218 29 1 3.3340 -2.7548 2.0497 30 1 6.0296 -4.2823 4.1601 31 1 4.2949 1.0778 0.5629 32 1 5.4614 -0.4533 3.0392 33 1 6.0862 1.1429 2.3582 34 1 3.8243 2.2092 2.7839 35 1 3.1995 0.6133 3.4646 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381237129.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:14 Heat of formation + Delta-G solvation = -155.500481 kcal Electronic energy + Delta-G solvation = -22608.164422 eV Core-core repulsion = 18807.027900 eV Total energy + Delta-G solvation = -3801.136521 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.62989 -47.20234 -46.97399 -39.11810 -36.88600 -33.34935 -32.66726 -31.19921 -27.64812 -25.99847 -24.61334 -22.84799 -21.63624 -20.72150 -19.35798 -18.57479 -17.91098 -17.86935 -16.34136 -15.88703 -15.35819 -15.01077 -14.41072 -14.02477 -13.88084 -13.72006 -13.52702 -13.40222 -13.22598 -13.20750 -13.07072 -12.55970 -12.37697 -12.26971 -12.09052 -11.66917 -11.32374 -10.98268 -10.80280 -10.76962 -10.35233 -10.17577 -10.00791 -9.72882 -9.36955 -9.16305 -8.48221 -7.39573 -6.06403 -4.05561 3.06998 3.29371 3.37716 3.43170 3.90052 4.07088 4.28696 4.42141 4.52009 4.54216 4.78913 5.10328 5.21101 5.28248 5.50045 5.56315 5.60455 5.62688 5.73204 5.86173 5.98468 6.05575 6.19207 6.45244 6.63663 7.01189 7.13073 7.31246 7.46228 7.75269 7.96668 8.04476 8.42419 9.02578 9.56779 11.03728 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.024182 B = 0.007219 C = 0.006508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.631258 B = 3877.909535 C = 4301.480274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.107 3.893 3 O -0.539 6.539 4 C 0.024 3.976 5 N -0.505 5.505 6 C 0.188 3.812 7 C -0.493 4.493 8 H 0.066 0.934 9 C 0.054 3.946 10 N -0.900 5.900 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.027 3.973 16 C -0.166 4.166 17 C -0.221 4.221 18 C 0.429 3.571 19 F -0.182 7.182 20 F -0.194 7.194 21 F -0.154 7.154 22 H 0.083 0.917 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.385 0.615 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.006 0.994 29 H 0.026 0.974 30 H 0.261 0.739 31 H 0.102 0.898 32 H 0.137 0.863 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.158 8.199 -5.559 12.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.063 3.937 3 O -0.350 6.350 4 C -0.105 4.105 5 N -0.228 5.228 6 C 0.064 3.936 7 C -0.532 4.532 8 H 0.084 0.916 9 C -0.147 4.147 10 N -0.540 5.540 11 Si 0.723 3.277 12 H -0.196 1.196 13 H -0.212 1.212 14 H -0.211 1.211 15 C -0.082 4.082 16 C -0.203 4.203 17 C -0.261 4.261 18 C 0.374 3.626 19 F -0.163 7.163 20 F -0.176 7.176 21 F -0.135 7.135 22 H 0.102 0.898 23 H 0.091 0.909 24 H 0.101 0.899 25 H 0.239 0.761 26 H 0.106 0.894 27 H 0.079 0.921 28 H 0.024 0.976 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.119 0.881 32 H 0.155 0.845 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.582 8.012 -5.814 13.102 hybrid contribution 1.463 -0.367 0.300 1.538 sum -7.119 7.645 -5.514 11.813 Atomic orbital electron populations 1.21822 0.90122 1.03893 1.04437 1.22453 0.96538 0.83685 0.91007 1.86579 1.30711 1.23292 1.94454 1.22812 0.92026 1.00691 0.94961 1.62329 1.00897 1.05177 1.54361 1.19895 0.96280 0.88080 0.89346 1.21117 0.97818 1.24961 1.09271 0.91560 1.24961 0.98397 0.96298 0.95083 1.69956 1.37452 1.31728 1.14828 0.86476 0.84441 0.78306 0.78471 1.19602 1.21165 1.21129 1.22526 1.03012 0.92234 0.90407 1.23557 0.90901 1.03856 1.01999 1.23307 1.01687 0.99033 1.02025 1.21337 0.77338 0.78029 0.85880 1.93148 1.88589 1.37865 1.96719 1.93131 1.88765 1.80965 1.54735 1.93296 1.27684 1.96046 1.96438 0.89840 0.90872 0.89895 0.76144 0.89376 0.92136 0.97614 0.95580 0.92981 0.88100 0.84548 0.90040 0.89834 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.60 37.16 0.32 -1.38 16 2 C 0.11 1.57 0.79 -90.62 -0.07 1.50 16 3 O -0.54 -7.86 12.39 -35.23 -0.44 -8.30 16 4 C 0.02 0.40 4.09 -3.82 -0.02 0.39 16 5 N -0.50 -10.01 2.49 -228.09 -0.57 -10.58 16 6 C 0.19 4.57 4.27 -4.98 -0.02 4.55 16 7 C -0.49 -13.09 6.81 -34.44 -0.23 -13.33 16 8 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 9 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 10 N -0.90 -25.65 13.29 55.43 0.74 -24.91 16 11 Si 0.89 21.26 29.54 -169.99 -5.02 16.23 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 C 0.03 0.49 4.30 -67.71 -0.29 0.20 16 16 C -0.17 -3.16 8.86 -26.73 -0.24 -3.39 16 17 C -0.22 -3.69 9.16 -26.73 -0.24 -3.93 16 18 C 0.43 7.00 2.34 37.16 0.09 7.08 16 19 F -0.18 -3.10 16.48 2.25 0.04 -3.06 16 20 F -0.19 -3.02 16.66 2.25 0.04 -2.98 16 21 F -0.15 -2.86 14.43 2.25 0.03 -2.83 16 22 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 23 H 0.07 0.81 7.67 -51.93 -0.40 0.41 16 24 H 0.08 0.88 7.94 -51.93 -0.41 0.47 16 25 H 0.38 5.37 5.06 45.56 0.23 5.60 16 26 H 0.09 1.49 7.51 -51.93 -0.39 1.10 16 27 H 0.06 0.99 6.64 -51.93 -0.34 0.64 16 28 H 0.01 0.16 6.06 -51.93 -0.31 -0.16 16 29 H 0.03 0.69 7.69 -51.93 -0.40 0.29 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.10 1.62 5.93 -51.93 -0.31 1.31 16 32 H 0.14 3.14 4.90 -51.93 -0.25 2.89 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.08 1.50 7.18 -51.93 -0.37 1.13 16 LS Contribution 288.39 15.07 4.35 4.35 Total: -1.00 -28.28 288.39 -5.42 -33.71 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -3.78 Total: 5.34 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -0.81 Total: -6.96 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.17 Total: -35.50 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.44 Total: -8.30 kcal Atomic # 9 Polarization: -8.98 SS G_CDS: 0.11 Total: -8.87 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.28 -5.42 -33.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381237129.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.795 kcal (2) G-P(sol) polarization free energy of solvation -28.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds