Wall clock time and date at job start Mon Mar 30 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42891 * 109.47700 * 2 1 4 4 C 1.53002 * 109.47001 * 119.99865 * 2 1 3 5 5 N 1.46902 * 109.47275 * 173.85547 * 4 2 1 6 6 C 1.46894 * 111.00270 * 198.04641 * 5 4 2 7 7 C 1.50702 * 109.47294 * 163.34174 * 6 5 4 8 8 H 1.07995 * 119.99981 * 355.11760 * 7 6 5 9 9 C 1.37874 * 120.00036 * 175.11657 * 7 6 5 10 10 N 1.31516 * 120.00368 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00226 * 180.02562 * 9 7 6 12 12 H 1.48509 * 109.46678 * 0.02562 * 11 9 7 13 13 H 1.48495 * 109.47314 * 119.99922 * 11 9 7 14 14 H 1.48498 * 109.47247 * 240.00704 * 11 9 7 15 15 C 1.46904 * 110.99538 * 74.09116 * 5 4 2 16 16 C 1.52998 * 117.49488 * 127.15624 * 15 5 4 17 17 C 1.52997 * 117.49910 * 58.53237 * 15 5 4 18 18 C 1.53004 * 109.46975 * 239.99537 * 2 1 3 19 19 F 1.39903 * 109.47090 * 300.00379 * 18 2 1 20 20 F 1.39896 * 109.46985 * 60.00239 * 18 2 1 21 21 F 1.39901 * 109.47445 * 180.02562 * 18 2 1 22 22 H 1.09007 * 109.46858 * 304.83516 * 1 2 3 23 23 H 1.08999 * 109.46877 * 64.82699 * 1 2 3 24 24 H 1.08999 * 109.47715 * 184.83191 * 1 2 3 25 25 H 0.96702 * 114.00287 * 190.51351 * 3 2 1 26 26 H 1.09001 * 109.47303 * 53.85927 * 4 2 1 27 27 H 1.08994 * 109.47345 * 293.85927 * 4 2 1 28 28 H 1.09000 * 109.47002 * 283.34324 * 6 5 4 29 29 H 1.09004 * 109.47150 * 43.34146 * 6 5 4 30 30 H 0.96993 * 120.00754 * 179.97438 * 10 9 7 31 31 H 1.08999 * 115.54978 * 272.85636 * 15 5 4 32 32 H 1.08996 * 117.50193 * 359.97438 * 16 15 5 33 33 H 1.09005 * 117.49954 * 145.02368 * 16 15 5 34 34 H 1.08992 * 117.49982 * 214.97739 * 17 15 5 35 35 H 1.09007 * 117.49981 * 359.97438 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3471 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5015 -0.8510 1.1775 6 6 3.9847 -1.8821 2.1055 7 6 5.3894 -2.2779 1.7295 8 1 5.8458 -1.8691 0.8402 9 6 6.0917 -3.1619 2.5209 10 7 5.5357 -3.6601 3.6036 11 14 7.8331 -3.6520 2.0552 12 1 8.2247 -2.9568 0.8027 13 1 8.7641 -3.2672 3.1462 14 1 7.8949 -5.1209 1.8467 15 6 4.1576 0.4380 1.4346 16 6 5.2378 0.4772 2.5174 17 6 3.8736 1.1205 2.7742 18 6 2.0400 -0.7214 -1.2492 19 9 1.5735 -2.0404 -1.2491 20 9 1.5737 -0.0619 -2.3915 21 9 3.4390 -0.7219 -1.2490 22 1 -0.3633 0.5871 0.8436 23 1 -0.3633 0.4371 -0.9301 24 1 -0.3634 -1.0240 0.0866 25 1 2.9565 1.4284 -0.1612 26 1 1.5897 -1.7123 1.3060 27 1 1.7692 -0.1479 2.1358 28 1 3.9779 -1.4882 3.1218 29 1 3.3340 -2.7548 2.0497 30 1 6.0296 -4.2823 4.1601 31 1 4.2949 1.0778 0.5629 32 1 5.4614 -0.4533 3.0392 33 1 6.0862 1.1429 2.3582 34 1 3.8243 2.2092 2.7839 35 1 3.1995 0.6133 3.4646 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381237129.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:14 Heat of formation + Delta-G solvation = -173.437163 kcal Electronic energy + Delta-G solvation = -22608.942215 eV Core-core repulsion = 18807.027900 eV Total energy + Delta-G solvation = -3801.914314 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.94581 -48.49728 -48.34595 -40.53301 -38.20186 -35.04231 -34.34884 -32.55900 -29.44362 -27.21796 -26.11777 -24.68363 -23.04959 -22.00063 -20.88691 -19.85203 -19.22474 -19.19138 -18.34642 -17.43559 -16.85196 -16.51801 -16.05655 -15.34112 -15.25005 -15.09997 -14.85086 -14.67969 -14.63290 -14.55396 -14.45175 -14.26839 -13.74301 -13.45353 -13.33249 -13.15670 -12.85835 -12.73145 -12.63408 -12.25121 -12.03958 -11.69552 -11.65565 -11.26240 -11.16296 -10.67501 -10.57892 -9.00465 -8.15745 -6.20859 1.39841 1.42529 1.54365 1.80856 2.41561 2.72698 2.79457 3.00774 3.12149 3.17102 3.19886 3.45332 3.83595 3.97582 4.13131 4.17053 4.24134 4.47051 4.64708 4.71790 4.76874 4.86844 5.00474 5.09470 5.12480 5.21659 5.30830 5.63661 5.70690 6.07204 6.27747 6.34675 6.54502 6.92099 7.45201 8.94256 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.024182 B = 0.007219 C = 0.006508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.631258 B = 3877.909535 C = 4301.480274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.117 3.883 3 O -0.535 6.535 4 C 0.024 3.976 5 N -0.512 5.512 6 C 0.207 3.793 7 C -0.493 4.493 8 H 0.057 0.943 9 C 0.005 3.995 10 N -0.933 5.933 11 Si 0.956 3.044 12 H -0.267 1.267 13 H -0.280 1.280 14 H -0.284 1.284 15 C 0.023 3.977 16 C -0.186 4.186 17 C -0.195 4.195 18 C 0.424 3.576 19 F -0.188 7.188 20 F -0.188 7.188 21 F -0.170 7.170 22 H 0.098 0.902 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.387 0.613 26 H 0.081 0.919 27 H 0.068 0.932 28 H -0.014 1.014 29 H -0.003 1.003 30 H 0.262 0.738 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.536 9.723 -6.357 14.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.074 3.926 3 O -0.347 6.347 4 C -0.105 4.105 5 N -0.235 5.235 6 C 0.081 3.919 7 C -0.532 4.532 8 H 0.075 0.925 9 C -0.192 4.192 10 N -0.574 5.574 11 Si 0.782 3.218 12 H -0.191 1.191 13 H -0.206 1.206 14 H -0.210 1.210 15 C -0.085 4.085 16 C -0.223 4.223 17 C -0.234 4.234 18 C 0.370 3.630 19 F -0.170 7.170 20 F -0.170 7.170 21 F -0.152 7.152 22 H 0.117 0.883 23 H 0.101 0.899 24 H 0.110 0.890 25 H 0.241 0.759 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.004 0.996 29 H 0.015 0.985 30 H 0.070 0.930 31 H 0.144 0.856 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.134 0.866 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.969 9.555 -6.626 14.684 hybrid contribution 1.545 -0.811 0.530 1.824 sum -7.424 8.744 -6.096 12.990 Atomic orbital electron populations 1.21904 0.87486 1.05040 1.05687 1.22439 0.98249 0.83195 0.88764 1.86594 1.30957 1.22850 1.94263 1.22878 0.89972 1.01001 0.96634 1.62199 1.02929 1.05455 1.52897 1.19477 0.94848 0.88336 0.89209 1.21278 0.98851 1.24512 1.08569 0.92474 1.25697 1.02014 0.96470 0.95065 1.70061 1.38949 1.32549 1.15883 0.85528 0.80198 0.77775 0.78319 1.19134 1.20551 1.21025 1.22724 1.02360 0.91709 0.91750 1.23387 0.92845 1.02982 1.03068 1.23291 0.99202 1.00529 1.00372 1.21648 0.76593 0.77979 0.86795 1.93134 1.88555 1.38514 1.96798 1.93140 1.88558 1.80730 1.54533 1.93260 1.29199 1.96123 1.96573 0.88295 0.89855 0.88963 0.75880 0.90027 0.91348 0.99638 0.98481 0.92957 0.85555 0.88932 0.88070 0.86572 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.60 71.98 0.62 -2.34 16 2 C 0.12 3.20 0.79 -10.79 -0.01 3.19 16 3 O -0.54 -14.02 12.39 -148.98 -1.85 -15.86 16 4 C 0.02 0.77 4.09 86.30 0.35 1.12 16 5 N -0.51 -20.19 2.49 -875.53 -2.18 -22.37 16 6 C 0.21 10.32 4.27 85.56 0.37 10.69 16 7 C -0.49 -26.73 6.81 25.60 0.17 -26.55 16 8 H 0.06 3.15 7.81 -2.91 -0.02 3.12 16 9 C 0.01 0.28 5.46 84.65 0.46 0.75 16 10 N -0.93 -54.49 13.29 21.45 0.28 -54.20 16 11 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 14 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 15 C 0.02 0.80 4.30 44.91 0.19 0.99 16 16 C -0.19 -6.94 8.86 30.59 0.27 -6.67 16 17 C -0.19 -6.11 9.16 30.59 0.28 -5.83 16 18 C 0.42 13.21 2.34 71.98 0.17 13.38 16 19 F -0.19 -6.26 16.48 44.97 0.74 -5.52 16 20 F -0.19 -5.46 16.66 44.97 0.75 -4.71 16 21 F -0.17 -6.18 14.43 44.97 0.65 -5.53 16 22 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 23 H 0.08 1.58 7.67 -2.39 -0.02 1.56 16 24 H 0.09 1.73 7.94 -2.39 -0.02 1.71 16 25 H 0.39 9.67 5.06 -74.06 -0.37 9.30 16 26 H 0.08 2.75 7.51 -2.39 -0.02 2.73 16 27 H 0.07 2.12 6.64 -2.39 -0.02 2.11 16 28 H -0.01 -0.75 6.06 -2.39 -0.01 -0.76 16 29 H 0.00 -0.16 7.69 -2.39 -0.02 -0.18 16 30 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 31 H 0.13 3.71 5.93 -2.39 -0.01 3.70 16 32 H 0.09 4.38 4.90 -2.39 -0.01 4.37 16 33 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 34 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 35 H 0.07 2.48 7.18 -2.38 -0.02 2.47 16 Total: -1.00 -61.07 288.39 4.05 -57.03 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.75 Total: 16.38 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 2.88 Total: -11.28 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -1.90 Total: -76.57 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -1.85 Total: -15.86 kcal Atomic # 9 Polarization: -17.90 SS G_CDS: 2.14 Total: -15.76 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -61.07 4.05 -57.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381237129.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.411 kcal (2) G-P(sol) polarization free energy of solvation -61.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds