Wall clock time and date at job start Mon Mar 30 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46840 * 2 1 4 4 C 1.52998 * 109.46895 * 240.00632 * 2 1 3 5 5 N 1.46901 * 109.47519 * 59.99623 * 4 2 1 6 6 C 1.46900 * 110.99936 * 189.99883 * 5 4 2 7 7 C 1.50706 * 109.46823 * 163.34712 * 6 5 4 8 8 H 1.07995 * 119.99900 * 2.45242 * 7 6 5 9 9 C 1.37882 * 119.99604 * 182.45260 * 7 6 5 10 10 N 1.31515 * 119.99412 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00132 * 0.02562 * 9 7 6 12 12 H 1.48507 * 109.46983 * 90.00412 * 11 9 7 13 13 H 1.48496 * 109.47090 * 209.99572 * 11 9 7 14 14 H 1.48490 * 109.47297 * 329.99867 * 11 9 7 15 15 C 1.46901 * 110.99562 * 66.04939 * 5 4 2 16 16 C 1.52999 * 117.49912 * 131.80228 * 15 5 4 17 17 C 1.52998 * 117.50032 * 63.13832 * 15 5 4 18 18 C 1.52991 * 109.47169 * 120.00496 * 2 1 3 19 19 F 1.39898 * 109.47251 * 180.02562 * 18 2 1 20 20 F 1.39902 * 109.47024 * 299.99447 * 18 2 1 21 21 F 1.39894 * 109.47330 * 59.99788 * 18 2 1 22 22 H 1.09002 * 109.47496 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47285 * 299.99914 * 1 2 3 24 24 H 1.09007 * 109.47436 * 59.99298 * 1 2 3 25 25 H 0.96700 * 113.99304 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.47105 * 299.99684 * 4 2 1 27 27 H 1.09003 * 109.47074 * 180.02562 * 4 2 1 28 28 H 1.09002 * 109.47135 * 43.35429 * 6 5 4 29 29 H 1.08995 * 109.47715 * 283.34780 * 6 5 4 30 30 H 0.97002 * 119.99719 * 180.02562 * 10 9 7 31 31 H 1.09004 * 115.54476 * 277.46407 * 15 5 4 32 32 H 1.09002 * 117.49996 * 359.97438 * 16 15 5 33 33 H 1.08994 * 117.50393 * 145.01399 * 16 15 5 34 34 H 1.09003 * 117.49580 * 214.97203 * 17 15 5 35 35 H 1.09000 * 117.49916 * 359.97438 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0399 -0.7211 -1.2493 5 7 1.5502 -0.0286 -2.4487 6 6 1.8170 -0.8183 -3.6584 7 6 0.9665 -0.3044 -4.7914 8 1 0.3244 0.5507 -4.6398 9 6 1.0081 -0.9259 -6.0215 10 7 0.2663 -0.4772 -7.0103 11 14 2.1182 -2.4053 -6.2833 12 1 1.3721 -3.6476 -5.9583 13 1 2.5585 -2.4490 -7.7008 14 1 3.3060 -2.2955 -5.3991 15 6 2.1356 1.3144 -2.5570 16 6 2.7270 1.7204 -3.9084 17 6 3.6528 1.4119 -2.7290 18 6 2.0400 -0.7213 1.2491 19 9 3.4390 -0.7208 1.2494 20 9 1.5737 -0.0618 2.3914 21 9 1.5736 -2.0402 1.2491 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5140 -0.8900 25 1 2.9703 1.4236 -0.0004 26 1 1.6766 -1.7488 -1.2494 27 1 3.1300 -0.7215 -1.2491 28 1 1.5769 -1.8646 -3.4695 29 1 2.8700 -0.7296 -3.9254 30 1 0.2953 -0.9146 -7.8756 31 1 1.6448 2.0899 -1.9690 32 1 2.6820 0.9909 -4.7171 33 1 2.6256 2.7630 -4.2094 34 1 4.1601 2.2520 -2.2545 35 1 4.2166 0.4796 -2.7614 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381237130.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:18 Heat of formation + Delta-G solvation = -161.490152 kcal Electronic energy + Delta-G solvation = -22206.200267 eV Core-core repulsion = 18404.804014 eV Total energy + Delta-G solvation = -3801.396253 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.16578 -47.68497 -47.61495 -39.25784 -36.97684 -33.42761 -32.67035 -31.16401 -28.12275 -26.56527 -24.72315 -22.49150 -21.67704 -20.90968 -19.24485 -18.57657 -18.32764 -18.21326 -16.84461 -16.18484 -15.83151 -14.94268 -14.59112 -14.48308 -14.15286 -14.08039 -13.98989 -13.82341 -13.79695 -13.60317 -13.28364 -12.59373 -12.33822 -12.25541 -11.90955 -11.78042 -11.51619 -11.15128 -10.90897 -10.75848 -10.44291 -10.27355 -9.94338 -9.87422 -9.38130 -9.17683 -8.62088 -7.48948 -6.10927 -4.06283 2.63129 3.22476 3.30512 3.31901 3.62777 3.69315 3.96124 4.35139 4.36718 4.45869 4.70342 4.79389 4.95934 5.19361 5.53979 5.60359 5.69182 5.73572 5.81301 5.86314 5.89473 6.10227 6.42236 6.49781 6.63212 6.75364 6.79118 7.24469 7.32561 7.49776 7.73648 7.89979 8.57216 9.01896 9.49268 11.01692 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.026855 B = 0.006273 C = 0.005869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.382887 B = 4462.710756 C = 4769.774315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.110 3.890 3 O -0.521 6.521 4 C 0.026 3.974 5 N -0.482 5.482 6 C 0.155 3.845 7 C -0.499 4.499 8 H 0.085 0.915 9 C 0.069 3.931 10 N -0.895 5.895 11 Si 0.868 3.132 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.269 1.269 15 C 0.041 3.959 16 C -0.170 4.170 17 C -0.242 4.242 18 C 0.421 3.579 19 F -0.188 7.188 20 F -0.179 7.179 21 F -0.179 7.179 22 H 0.078 0.922 23 H 0.064 0.936 24 H 0.105 0.895 25 H 0.380 0.620 26 H 0.089 0.911 27 H 0.041 0.959 28 H 0.023 0.977 29 H -0.004 1.004 30 H 0.264 0.736 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.008 0.702 14.732 15.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.066 3.934 3 O -0.327 6.327 4 C -0.103 4.103 5 N -0.204 5.204 6 C 0.029 3.971 7 C -0.537 4.537 8 H 0.103 0.897 9 C -0.133 4.133 10 N -0.534 5.534 11 Si 0.696 3.304 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.194 1.194 15 C -0.069 4.069 16 C -0.207 4.207 17 C -0.282 4.282 18 C 0.366 3.634 19 F -0.169 7.169 20 F -0.160 7.160 21 F -0.161 7.161 22 H 0.097 0.903 23 H 0.083 0.917 24 H 0.124 0.876 25 H 0.228 0.772 26 H 0.108 0.892 27 H 0.059 0.941 28 H 0.041 0.959 29 H 0.014 0.986 30 H 0.074 0.926 31 H 0.143 0.857 32 H 0.153 0.847 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.808 0.818 14.600 15.111 hybrid contribution 2.308 -1.278 -0.047 2.638 sum 6.116 -0.459 14.553 15.792 Atomic orbital electron populations 1.21745 0.88480 1.03947 1.05069 1.22438 0.98713 0.83521 0.88731 1.86708 1.27287 1.22764 1.95937 1.22708 0.98018 0.98579 0.90998 1.61956 1.55464 1.01461 1.01554 1.20345 0.95680 0.92973 0.88067 1.20931 1.24336 1.15809 0.92602 0.89688 1.24869 0.95495 0.96831 0.96082 1.69879 1.39796 1.41074 1.02660 0.86973 0.81692 0.84109 0.77662 1.20137 1.21131 1.19406 1.22774 0.90237 0.92963 1.00882 1.23650 1.00510 1.02871 0.93690 1.23416 0.95414 1.02181 1.07139 1.21852 0.75483 0.78292 0.87791 1.93154 1.30491 1.96376 1.96886 1.93173 1.88336 1.80676 1.53820 1.93171 1.88372 1.37700 1.96813 0.90300 0.91735 0.87624 0.77163 0.89249 0.94051 0.95919 0.98624 0.92594 0.85692 0.84681 0.89917 0.89887 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.44 37.16 0.31 -1.50 16 2 C 0.11 1.49 0.63 -90.63 -0.06 1.43 16 3 O -0.52 -6.82 9.79 -35.23 -0.34 -7.16 16 4 C 0.03 0.41 3.94 -3.82 -0.02 0.39 16 5 N -0.48 -9.15 3.91 -228.08 -0.89 -10.04 16 6 C 0.16 3.48 3.33 -4.97 -0.02 3.47 16 7 C -0.50 -13.18 7.06 -34.44 -0.24 -13.42 16 8 H 0.09 2.49 8.00 -52.49 -0.42 2.07 16 9 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 10 N -0.90 -26.32 13.96 55.43 0.77 -25.55 16 11 Si 0.87 20.60 27.42 -169.99 -4.66 15.94 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.27 -6.16 6.61 56.52 0.37 -5.79 16 15 C 0.04 0.71 4.35 -67.71 -0.29 0.42 16 16 C -0.17 -3.23 8.88 -26.69 -0.24 -3.47 16 17 C -0.24 -3.85 8.94 -26.69 -0.24 -4.09 16 18 C 0.42 5.47 2.38 37.15 0.09 5.56 16 19 F -0.19 -2.42 16.42 2.25 0.04 -2.38 16 20 F -0.18 -2.36 16.74 2.25 0.04 -2.32 16 21 F -0.18 -2.39 16.28 2.25 0.04 -2.35 16 22 H 0.08 0.99 7.80 -51.93 -0.41 0.59 16 23 H 0.06 0.78 7.80 -51.93 -0.41 0.38 16 24 H 0.11 1.61 7.60 -51.92 -0.39 1.21 16 25 H 0.38 4.10 8.27 45.56 0.38 4.48 16 26 H 0.09 1.39 7.51 -51.93 -0.39 1.00 16 27 H 0.04 0.63 6.80 -51.93 -0.35 0.28 16 28 H 0.02 0.52 7.09 -51.93 -0.37 0.15 16 29 H 0.00 -0.09 5.25 -51.93 -0.27 -0.36 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.13 2.12 6.75 -51.93 -0.35 1.77 16 32 H 0.14 3.06 4.77 -51.93 -0.25 2.81 16 33 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.08 1.34 7.14 -51.93 -0.37 0.97 16 LS Contribution 288.17 15.07 4.34 4.34 Total: -1.00 -28.05 288.17 -5.08 -33.13 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -3.61 Total: 5.79 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -0.80 Total: -9.41 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.12 Total: -35.58 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.34 Total: -7.16 kcal Atomic # 9 Polarization: -7.17 SS G_CDS: 0.11 Total: -7.06 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.66 Total: 15.94 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.05 -5.08 -33.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381237130.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.360 kcal (2) G-P(sol) polarization free energy of solvation -28.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds