Wall clock time and date at job start Mon Mar 30 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46840 * 2 1 4 4 C 1.52998 * 109.46895 * 240.00632 * 2 1 3 5 5 N 1.46901 * 109.47519 * 59.99623 * 4 2 1 6 6 C 1.46900 * 110.99936 * 189.99883 * 5 4 2 7 7 C 1.50706 * 109.46823 * 163.34712 * 6 5 4 8 8 H 1.07995 * 119.99900 * 2.45242 * 7 6 5 9 9 C 1.37882 * 119.99604 * 182.45260 * 7 6 5 10 10 N 1.31515 * 119.99412 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00132 * 0.02562 * 9 7 6 12 12 H 1.48507 * 109.46983 * 90.00412 * 11 9 7 13 13 H 1.48496 * 109.47090 * 209.99572 * 11 9 7 14 14 H 1.48490 * 109.47297 * 329.99867 * 11 9 7 15 15 C 1.46901 * 110.99562 * 66.04939 * 5 4 2 16 16 C 1.52999 * 117.49912 * 131.80228 * 15 5 4 17 17 C 1.52998 * 117.50032 * 63.13832 * 15 5 4 18 18 C 1.52991 * 109.47169 * 120.00496 * 2 1 3 19 19 F 1.39898 * 109.47251 * 180.02562 * 18 2 1 20 20 F 1.39902 * 109.47024 * 299.99447 * 18 2 1 21 21 F 1.39894 * 109.47330 * 59.99788 * 18 2 1 22 22 H 1.09002 * 109.47496 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47285 * 299.99914 * 1 2 3 24 24 H 1.09007 * 109.47436 * 59.99298 * 1 2 3 25 25 H 0.96700 * 113.99304 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.47105 * 299.99684 * 4 2 1 27 27 H 1.09003 * 109.47074 * 180.02562 * 4 2 1 28 28 H 1.09002 * 109.47135 * 43.35429 * 6 5 4 29 29 H 1.08995 * 109.47715 * 283.34780 * 6 5 4 30 30 H 0.97002 * 119.99719 * 180.02562 * 10 9 7 31 31 H 1.09004 * 115.54476 * 277.46407 * 15 5 4 32 32 H 1.09002 * 117.49996 * 359.97438 * 16 15 5 33 33 H 1.08994 * 117.50393 * 145.01399 * 16 15 5 34 34 H 1.09003 * 117.49580 * 214.97203 * 17 15 5 35 35 H 1.09000 * 117.49916 * 359.97438 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0399 -0.7211 -1.2493 5 7 1.5502 -0.0286 -2.4487 6 6 1.8170 -0.8183 -3.6584 7 6 0.9665 -0.3044 -4.7914 8 1 0.3244 0.5507 -4.6398 9 6 1.0081 -0.9259 -6.0215 10 7 0.2663 -0.4772 -7.0103 11 14 2.1182 -2.4053 -6.2833 12 1 1.3721 -3.6476 -5.9583 13 1 2.5585 -2.4490 -7.7008 14 1 3.3060 -2.2955 -5.3991 15 6 2.1356 1.3144 -2.5570 16 6 2.7270 1.7204 -3.9084 17 6 3.6528 1.4119 -2.7290 18 6 2.0400 -0.7213 1.2491 19 9 3.4390 -0.7208 1.2494 20 9 1.5737 -0.0618 2.3914 21 9 1.5736 -2.0402 1.2491 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5140 -0.8900 25 1 2.9703 1.4236 -0.0004 26 1 1.6766 -1.7488 -1.2494 27 1 3.1300 -0.7215 -1.2491 28 1 1.5769 -1.8646 -3.4695 29 1 2.8700 -0.7296 -3.9254 30 1 0.2953 -0.9146 -7.8756 31 1 1.6448 2.0899 -1.9690 32 1 2.6820 0.9909 -4.7171 33 1 2.6256 2.7630 -4.2094 34 1 4.1601 2.2520 -2.2545 35 1 4.2166 0.4796 -2.7614 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381237130.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:18 Heat of formation + Delta-G solvation = -180.960047 kcal Electronic energy + Delta-G solvation = -22207.044545 eV Core-core repulsion = 18404.804014 eV Total energy + Delta-G solvation = -3802.240531 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.19409 -48.70434 -48.64705 -40.59160 -38.21990 -34.97430 -34.43046 -32.53144 -29.87612 -27.67237 -26.05821 -24.25233 -23.07688 -22.09768 -20.64146 -19.67899 -19.40921 -19.29079 -18.82914 -17.62666 -17.08591 -16.29045 -16.04254 -15.68081 -15.50731 -15.17111 -15.15555 -15.09520 -14.83124 -14.78617 -14.55391 -14.40721 -13.67641 -13.45381 -13.35949 -13.11336 -12.80382 -12.71638 -12.53375 -12.22996 -11.99732 -11.89532 -11.53727 -11.34569 -11.26914 -10.72359 -10.55613 -8.97897 -8.22888 -6.21473 1.34928 1.36466 1.44882 1.56421 2.35623 2.53520 2.66230 2.90369 3.05251 3.11561 3.32962 3.35005 3.64373 3.81600 4.17003 4.24574 4.28842 4.50249 4.53915 4.76368 4.81348 4.81748 4.84615 5.00108 5.17515 5.32175 5.35035 5.59366 5.65705 5.97340 6.35490 6.42572 6.61520 6.83825 7.37210 8.93468 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.026855 B = 0.006273 C = 0.005869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.382887 B = 4462.710756 C = 4769.774315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.118 3.882 3 O -0.525 6.525 4 C 0.026 3.974 5 N -0.496 5.496 6 C 0.166 3.834 7 C -0.488 4.488 8 H 0.042 0.958 9 C 0.010 3.990 10 N -0.946 5.946 11 Si 0.934 3.066 12 H -0.268 1.268 13 H -0.286 1.286 14 H -0.252 1.252 15 C 0.040 3.960 16 C -0.200 4.200 17 C -0.205 4.205 18 C 0.429 3.571 19 F -0.184 7.184 20 F -0.178 7.178 21 F -0.180 7.180 22 H 0.084 0.916 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.391 0.609 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.026 0.974 29 H -0.004 1.004 30 H 0.264 0.736 31 H 0.135 0.865 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.682 0.112 16.744 18.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.074 3.926 3 O -0.333 6.333 4 C -0.103 4.103 5 N -0.218 5.218 6 C 0.039 3.961 7 C -0.526 4.526 8 H 0.060 0.940 9 C -0.187 4.187 10 N -0.588 5.588 11 Si 0.758 3.242 12 H -0.193 1.193 13 H -0.212 1.212 14 H -0.176 1.176 15 C -0.069 4.069 16 C -0.237 4.237 17 C -0.244 4.244 18 C 0.374 3.626 19 F -0.166 7.166 20 F -0.159 7.159 21 F -0.162 7.162 22 H 0.103 0.897 23 H 0.096 0.904 24 H 0.102 0.898 25 H 0.242 0.758 26 H 0.109 0.891 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.014 0.986 30 H 0.073 0.927 31 H 0.152 0.848 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.136 0.864 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.501 0.233 16.646 17.533 hybrid contribution 1.754 -0.991 -0.623 2.109 sum 7.254 -0.758 16.023 17.605 Atomic orbital electron populations 1.21728 0.88598 1.04288 1.04624 1.22217 0.98627 0.83625 0.88102 1.86699 1.28493 1.22218 1.95840 1.22756 0.98684 0.98593 0.90252 1.61777 1.56714 1.01888 1.01405 1.20063 0.94497 0.93213 0.88304 1.21045 1.23405 1.14041 0.94117 0.93967 1.25682 0.97141 1.00033 0.95833 1.70036 1.42281 1.43122 1.03312 0.85916 0.80245 0.80356 0.77643 1.19349 1.21242 1.17601 1.22808 0.91861 0.92420 0.99802 1.23472 1.04259 1.02269 0.93716 1.23424 0.94165 1.03080 1.03760 1.21598 0.75539 0.78058 0.87381 1.93165 1.30191 1.96349 1.96856 1.93180 1.88365 1.80679 1.53686 1.93176 1.88415 1.37784 1.96798 0.89676 0.90446 0.89751 0.75816 0.89149 0.92950 0.95644 0.98598 0.92679 0.84786 0.88630 0.89254 0.86449 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.44 71.98 0.61 -2.79 16 2 C 0.12 2.91 0.63 -10.80 -0.01 2.90 16 3 O -0.53 -12.18 9.79 -148.98 -1.46 -13.64 16 4 C 0.03 0.74 3.94 86.30 0.34 1.08 16 5 N -0.50 -18.27 3.91 -875.50 -3.42 -21.69 16 6 C 0.17 7.35 3.33 85.56 0.28 7.63 16 7 C -0.49 -26.44 7.06 25.60 0.18 -26.26 16 8 H 0.04 2.60 8.00 -2.91 -0.02 2.57 16 9 C 0.01 0.57 5.47 84.66 0.46 1.03 16 10 N -0.95 -57.58 13.96 21.45 0.30 -57.28 16 11 Si 0.93 42.61 27.42 68.60 1.88 44.49 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 13 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 14 H -0.25 -10.69 6.61 99.48 0.66 -10.04 16 15 C 0.04 1.34 4.35 44.91 0.20 1.54 16 16 C -0.20 -7.52 8.88 30.62 0.27 -7.25 16 17 C -0.21 -5.94 8.94 30.62 0.27 -5.67 16 18 C 0.43 9.92 2.38 71.98 0.17 10.09 16 19 F -0.18 -4.14 16.42 44.97 0.74 -3.40 16 20 F -0.18 -4.19 16.74 44.97 0.75 -3.44 16 21 F -0.18 -4.33 16.28 44.97 0.73 -3.60 16 22 H 0.08 2.00 7.80 -2.39 -0.02 1.98 16 23 H 0.08 1.72 7.80 -2.38 -0.02 1.71 16 24 H 0.08 2.51 7.60 -2.38 -0.02 2.49 16 25 H 0.39 6.98 8.27 -74.06 -0.61 6.36 16 26 H 0.09 2.60 7.51 -2.38 -0.02 2.59 16 27 H 0.05 1.41 6.80 -2.39 -0.02 1.40 16 28 H 0.03 1.12 7.09 -2.39 -0.02 1.10 16 29 H 0.00 -0.16 5.25 -2.39 -0.01 -0.17 16 30 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 31 H 0.13 4.31 6.75 -2.38 -0.02 4.30 16 32 H 0.10 4.42 4.77 -2.39 -0.01 4.41 16 33 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 34 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.08 2.35 7.14 -2.39 -0.02 2.33 16 Total: -1.00 -61.36 288.17 2.77 -58.59 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.46 Total: 17.66 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 2.78 Total: -17.69 kcal Atomic # 7 Polarization: -75.85 SS G_CDS: -3.12 Total: -78.97 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -1.46 Total: -13.64 kcal Atomic # 9 Polarization: -12.66 SS G_CDS: 2.22 Total: -10.43 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.88 Total: 44.49 kcal Total: -61.36 2.77 -58.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381237130.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.371 kcal (2) G-P(sol) polarization free energy of solvation -61.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds