Wall clock time and date at job start Mon Mar 30 2020 06:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47573 * 2 1 4 4 C 1.50702 * 109.47170 * 239.99524 * 2 1 3 5 5 H 1.08003 * 119.99699 * 240.00225 * 4 2 1 6 6 C 1.37868 * 119.99986 * 60.00345 * 4 2 1 7 7 N 1.31518 * 119.99922 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00121 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47044 * 90.00263 * 8 6 4 10 10 H 1.48500 * 109.47187 * 209.99721 * 8 6 4 11 11 H 1.48498 * 109.47119 * 330.00002 * 8 6 4 12 12 N 1.46903 * 109.46832 * 119.99705 * 2 1 3 13 13 C 1.46903 * 111.00157 * 275.00168 * 12 2 1 14 14 H 1.09003 * 110.53411 * 323.83701 * 13 12 2 15 15 C 1.54265 * 110.48754 * 86.45318 * 13 12 2 16 16 C 1.53869 * 106.59675 * 142.29167 * 15 13 12 17 17 C 1.54264 * 106.60338 * 359.97438 * 16 15 13 18 18 O 1.42899 * 110.48556 * 95.19812 * 17 16 15 19 19 C 1.52997 * 110.49014 * 217.71396 * 17 16 15 20 20 F 1.39905 * 109.47157 * 58.54298 * 19 17 16 21 21 F 1.39900 * 109.47010 * 298.54689 * 19 17 16 22 22 F 1.39897 * 109.47422 * 178.54381 * 19 17 16 23 23 C 1.54887 * 110.48549 * 201.23071 * 13 12 2 24 24 H 1.09000 * 109.46905 * 300.00125 * 1 2 3 25 25 H 1.09002 * 109.46533 * 60.00547 * 1 2 3 26 26 H 1.08996 * 109.47131 * 180.02562 * 1 2 3 27 27 H 0.97005 * 119.99609 * 180.02562 * 7 6 4 28 28 H 1.00904 * 111.00119 * 38.95207 * 12 2 1 29 29 H 1.08998 * 110.03299 * 23.00533 * 15 13 12 30 30 H 1.09003 * 110.07087 * 261.59634 * 15 13 12 31 31 H 1.09004 * 110.02954 * 240.71168 * 16 15 13 32 32 H 1.09002 * 110.07577 * 119.30971 * 16 15 13 33 33 H 0.96707 * 113.99808 * 63.25265 * 18 17 16 34 34 H 1.08998 * 110.75668 * 85.06630 * 23 13 12 35 35 H 1.08992 * 110.75645 * 321.68639 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2396 -2.4826 7 7 0.9438 0.8301 -2.6034 8 14 2.3227 -1.1198 -4.0078 9 1 1.3449 -2.1618 -4.4122 10 1 2.4875 -0.1406 -5.1120 11 1 3.6310 -1.7569 -3.7118 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3470 14 1 2.3838 1.2195 2.0250 15 6 0.7204 0.2772 3.0692 16 6 1.0245 0.3699 4.5747 17 6 2.5608 0.3677 4.7149 18 8 3.0573 1.7052 4.7971 19 6 2.9851 -0.4362 5.9455 20 9 2.5101 -1.7473 5.8326 21 9 2.4520 0.1554 7.0957 22 9 4.3812 -0.4521 6.0336 23 6 3.0597 -0.3191 3.4196 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 0.7092 1.1612 -3.4845 28 1 1.4495 -1.4979 1.4102 29 1 0.1495 -0.6271 2.8585 30 1 0.1608 1.1553 2.7466 31 1 0.6013 -0.4896 5.0947 32 1 0.6132 1.2928 4.9834 33 1 2.7512 2.1912 5.5751 34 1 4.0839 -0.0217 3.1944 35 1 2.9802 -1.4029 3.5023 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390455000.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:41 Heat of formation + Delta-G solvation = -210.335818 kcal Electronic energy + Delta-G solvation = -21546.520216 eV Core-core repulsion = 17743.005856 eV Total energy + Delta-G solvation = -3803.514360 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.24706 -47.78414 -47.68546 -39.30934 -36.38895 -34.13242 -31.98780 -29.18308 -29.10421 -26.47890 -25.20803 -24.13586 -20.79722 -20.33741 -20.30693 -18.84705 -18.42631 -18.27671 -16.57768 -16.01436 -15.28800 -14.89546 -14.56923 -14.51037 -14.39343 -14.17657 -13.89352 -13.85854 -13.83737 -13.37451 -12.93334 -12.76101 -12.43676 -12.24379 -11.57773 -11.39723 -11.31880 -11.02867 -10.88957 -10.75176 -10.58175 -10.39452 -10.24786 -10.10472 -9.82518 -8.94613 -8.35576 -7.30808 -5.98253 -4.01509 2.52951 3.33192 3.39745 3.44497 3.52818 3.55861 3.75987 4.16530 4.43944 4.50102 4.60508 5.07398 5.25894 5.33694 5.36785 5.46709 5.57454 5.78504 5.89558 5.98654 6.09931 6.34943 6.52289 6.70942 6.86342 7.08498 7.17127 7.34990 7.73952 7.88301 8.26733 8.51078 8.60363 9.05639 9.63972 11.08668 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.039105 B = 0.004427 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.849369 B = 6322.626449 C = 6543.859001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.212 3.788 3 H 0.034 0.966 4 C -0.496 4.496 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.676 5.676 13 C 0.096 3.904 14 H 0.087 0.913 15 C -0.146 4.146 16 C -0.143 4.143 17 C 0.089 3.911 18 O -0.520 6.520 19 C 0.427 3.573 20 F -0.177 7.177 21 F -0.189 7.189 22 F -0.176 7.176 23 C -0.099 4.099 24 H 0.011 0.989 25 H 0.087 0.913 26 H 0.026 0.974 27 H 0.259 0.741 28 H 0.328 0.672 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.381 0.619 34 H 0.090 0.910 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.364 -0.155 17.243 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.105 3.895 3 H 0.052 0.948 4 C -0.535 4.535 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.304 5.304 13 C -0.015 4.015 14 H 0.105 0.895 15 C -0.186 4.186 16 C -0.182 4.182 17 C 0.046 3.954 18 O -0.326 6.326 19 C 0.372 3.628 20 F -0.158 7.158 21 F -0.170 7.170 22 F -0.158 7.158 23 C -0.137 4.137 24 H 0.030 0.970 25 H 0.106 0.894 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.146 0.854 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.229 0.771 34 H 0.108 0.892 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.270 -0.147 16.370 16.420 hybrid contribution -0.971 -0.281 0.274 1.047 sum 0.299 -0.428 16.644 16.652 Atomic orbital electron populations 1.22536 1.00609 0.99168 1.00790 1.19221 0.89693 0.94341 0.86267 0.94782 1.21168 1.30218 1.12448 0.89647 0.91949 1.24943 0.95350 0.95182 0.99043 1.69886 1.37389 1.23152 1.23320 0.86513 0.79254 0.79221 0.82486 1.20883 1.21402 1.19868 1.60751 1.57962 1.08539 1.03162 1.22320 0.91082 0.97574 0.90553 0.89469 1.23026 1.00198 1.02836 0.92514 1.22817 0.91969 1.03428 0.99939 1.23381 0.96306 0.83685 0.92073 1.86734 1.74130 1.22386 1.49304 1.21612 0.75462 0.79557 0.86164 1.93179 1.88148 1.38445 1.96040 1.93155 1.86242 1.83701 1.53937 1.93198 1.29552 1.96390 1.96632 1.22625 1.01694 0.99819 0.89520 0.97026 0.89431 0.95474 0.93097 0.85441 0.91043 0.91008 0.90325 0.90144 0.77073 0.89177 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 8.73 37.16 0.32 -3.62 16 2 C 0.21 5.15 2.57 -68.86 -0.18 4.97 16 3 H 0.03 0.92 7.48 -51.93 -0.39 0.53 16 4 C -0.50 -13.52 8.84 -34.44 -0.30 -13.82 16 5 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 6 C 0.06 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.43 11.32 55.43 0.63 -24.80 16 8 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.68 -13.58 6.11 -99.21 -0.61 -14.18 16 13 C 0.10 1.61 3.13 -66.05 -0.21 1.40 16 14 H 0.09 1.62 7.52 -51.93 -0.39 1.23 16 15 C -0.15 -2.06 4.87 -25.62 -0.12 -2.18 16 16 C -0.14 -1.62 5.87 -25.62 -0.15 -1.77 16 17 C 0.09 1.08 0.69 -88.97 -0.06 1.02 16 18 O -0.52 -6.11 13.00 -35.23 -0.46 -6.57 16 19 C 0.43 5.10 2.40 37.16 0.09 5.19 16 20 F -0.18 -2.20 15.78 2.25 0.04 -2.17 16 21 F -0.19 -2.09 16.82 2.25 0.04 -2.05 16 22 F -0.18 -2.31 17.11 2.25 0.04 -2.27 16 23 C -0.10 -1.42 5.54 -24.75 -0.14 -1.56 16 24 H 0.01 0.22 5.87 -51.93 -0.30 -0.08 16 25 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 26 H 0.03 0.60 8.13 -51.93 -0.42 0.17 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.33 6.21 7.89 -39.29 -0.31 5.90 16 29 H 0.07 1.01 7.57 -51.93 -0.39 0.62 16 30 H 0.07 1.05 7.38 -51.93 -0.38 0.66 16 31 H 0.08 0.83 7.30 -51.93 -0.38 0.45 16 32 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 33 H 0.38 2.89 8.81 45.56 0.40 3.29 16 34 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.09 1.31 7.40 -51.93 -0.38 0.93 16 LS Contribution 292.72 15.07 4.41 4.41 Total: -1.00 -28.61 292.72 -5.43 -34.05 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -3.66 Total: 6.18 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -0.84 Total: -8.94 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.02 Total: -38.98 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.46 Total: -6.57 kcal Atomic # 9 Polarization: -6.60 SS G_CDS: 0.11 Total: -6.49 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.61 -5.43 -34.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390455000.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.290 kcal (2) G-P(sol) polarization free energy of solvation -28.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds