Wall clock time and date at job start Mon Mar 30 2020 06:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47573 * 2 1 4 4 C 1.50702 * 109.47170 * 239.99524 * 2 1 3 5 5 H 1.08003 * 119.99699 * 240.00225 * 4 2 1 6 6 C 1.37868 * 119.99986 * 60.00345 * 4 2 1 7 7 N 1.31518 * 119.99922 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00121 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47044 * 90.00263 * 8 6 4 10 10 H 1.48500 * 109.47187 * 209.99721 * 8 6 4 11 11 H 1.48498 * 109.47119 * 330.00002 * 8 6 4 12 12 N 1.46903 * 109.46832 * 119.99705 * 2 1 3 13 13 C 1.46903 * 111.00157 * 275.00168 * 12 2 1 14 14 H 1.09003 * 110.53411 * 323.83701 * 13 12 2 15 15 C 1.54265 * 110.48754 * 86.45318 * 13 12 2 16 16 C 1.53869 * 106.59675 * 142.29167 * 15 13 12 17 17 C 1.54264 * 106.60338 * 359.97438 * 16 15 13 18 18 O 1.42899 * 110.48556 * 95.19812 * 17 16 15 19 19 C 1.52997 * 110.49014 * 217.71396 * 17 16 15 20 20 F 1.39905 * 109.47157 * 58.54298 * 19 17 16 21 21 F 1.39900 * 109.47010 * 298.54689 * 19 17 16 22 22 F 1.39897 * 109.47422 * 178.54381 * 19 17 16 23 23 C 1.54887 * 110.48549 * 201.23071 * 13 12 2 24 24 H 1.09000 * 109.46905 * 300.00125 * 1 2 3 25 25 H 1.09002 * 109.46533 * 60.00547 * 1 2 3 26 26 H 1.08996 * 109.47131 * 180.02562 * 1 2 3 27 27 H 0.97005 * 119.99609 * 180.02562 * 7 6 4 28 28 H 1.00904 * 111.00119 * 38.95207 * 12 2 1 29 29 H 1.08998 * 110.03299 * 23.00533 * 15 13 12 30 30 H 1.09003 * 110.07087 * 261.59634 * 15 13 12 31 31 H 1.09004 * 110.02954 * 240.71168 * 16 15 13 32 32 H 1.09002 * 110.07577 * 119.30971 * 16 15 13 33 33 H 0.96707 * 113.99808 * 63.25265 * 18 17 16 34 34 H 1.08998 * 110.75668 * 85.06630 * 23 13 12 35 35 H 1.08992 * 110.75645 * 321.68639 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2396 -2.4826 7 7 0.9438 0.8301 -2.6034 8 14 2.3227 -1.1198 -4.0078 9 1 1.3449 -2.1618 -4.4122 10 1 2.4875 -0.1406 -5.1120 11 1 3.6310 -1.7569 -3.7118 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3470 14 1 2.3838 1.2195 2.0250 15 6 0.7204 0.2772 3.0692 16 6 1.0245 0.3699 4.5747 17 6 2.5608 0.3677 4.7149 18 8 3.0573 1.7052 4.7971 19 6 2.9851 -0.4362 5.9455 20 9 2.5101 -1.7473 5.8326 21 9 2.4520 0.1554 7.0957 22 9 4.3812 -0.4521 6.0336 23 6 3.0597 -0.3191 3.4196 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 0.7092 1.1612 -3.4845 28 1 1.4495 -1.4979 1.4102 29 1 0.1495 -0.6271 2.8585 30 1 0.1608 1.1553 2.7466 31 1 0.6013 -0.4896 5.0947 32 1 0.6132 1.2928 4.9834 33 1 2.7512 2.1912 5.5751 34 1 4.0839 -0.0217 3.1944 35 1 2.9802 -1.4029 3.5023 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390455000.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:40 Heat of formation + Delta-G solvation = -230.844760 kcal Electronic energy + Delta-G solvation = -21547.409551 eV Core-core repulsion = 17743.005856 eV Total energy + Delta-G solvation = -3804.403695 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -51.19475 -48.70481 -48.66308 -40.43391 -37.80093 -35.64334 -33.75576 -30.64454 -30.25515 -27.90382 -27.19487 -25.30090 -22.24161 -21.77293 -21.59186 -19.81933 -19.38533 -19.26500 -18.32993 -17.37104 -16.81509 -16.19501 -15.85027 -15.61203 -15.49910 -15.22222 -15.11210 -14.84692 -14.82730 -14.57174 -14.42479 -14.19795 -13.82551 -13.63593 -13.28718 -12.88047 -12.80995 -12.61549 -12.41619 -12.18623 -12.13750 -12.05379 -11.69792 -11.65184 -11.26756 -10.88631 -10.45226 -8.93967 -8.07329 -6.18131 1.44116 1.45267 1.55691 1.56617 2.45629 2.59351 2.61511 2.78626 3.19826 3.21198 3.48493 3.54441 3.85892 4.04326 4.29136 4.39252 4.40024 4.52094 4.77208 4.84698 4.86127 4.95757 4.98862 5.12186 5.23364 5.25778 5.47853 5.73428 5.87515 6.31474 6.47273 6.68761 6.87154 6.98763 7.52038 8.97836 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.039105 B = 0.004427 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.849369 B = 6322.626449 C = 6543.859001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.219 3.781 3 H -0.001 1.001 4 C -0.516 4.516 5 H 0.054 0.946 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.958 3.042 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.272 1.272 12 N -0.681 5.681 13 C 0.093 3.907 14 H 0.062 0.938 15 C -0.141 4.141 16 C -0.134 4.134 17 C 0.098 3.902 18 O -0.533 6.533 19 C 0.433 3.567 20 F -0.178 7.178 21 F -0.180 7.180 22 F -0.184 7.184 23 C -0.097 4.097 24 H 0.037 0.963 25 H 0.056 0.944 26 H 0.031 0.969 27 H 0.260 0.740 28 H 0.336 0.664 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.400 0.600 34 H 0.077 0.923 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.001 -0.696 18.542 18.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.110 3.890 3 H 0.017 0.983 4 C -0.555 4.555 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.785 3.215 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.197 1.197 12 N -0.310 5.310 13 C -0.018 4.018 14 H 0.080 0.920 15 C -0.181 4.181 16 C -0.172 4.172 17 C 0.054 3.946 18 O -0.342 6.342 19 C 0.378 3.622 20 F -0.160 7.160 21 F -0.161 7.161 22 F -0.166 7.166 23 C -0.135 4.135 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.154 0.846 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.252 0.748 34 H 0.096 0.904 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.902 -0.685 17.707 17.743 hybrid contribution -0.824 -0.071 -0.080 0.831 sum 0.077 -0.756 17.626 17.643 Atomic orbital electron populations 1.22329 0.99587 0.99263 1.00519 1.18936 0.90335 0.92391 0.87304 0.98291 1.21500 1.30314 1.12431 0.91229 0.92786 1.25690 0.95541 0.95869 1.01828 1.70015 1.38165 1.24216 1.23873 0.85550 0.78774 0.78221 0.79000 1.20080 1.21131 1.19651 1.60590 1.57986 1.09191 1.03272 1.22275 0.93657 0.95729 0.90160 0.92010 1.22881 0.98139 1.02706 0.94327 1.22784 0.91227 1.05434 0.97793 1.23134 0.96685 0.83822 0.90953 1.86706 1.74489 1.22230 1.50746 1.21466 0.75082 0.79378 0.86259 1.93180 1.88110 1.38625 1.96069 1.93175 1.86038 1.83517 1.53380 1.93188 1.30276 1.96414 1.96676 1.22500 1.00409 1.00386 0.90161 0.94402 0.92490 0.95035 0.93099 0.84567 0.90775 0.91542 0.88812 0.87780 0.74810 0.90414 0.88237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.27 8.73 71.98 0.63 -6.64 16 2 C 0.22 10.82 2.57 44.17 0.11 10.94 16 3 H 0.00 -0.05 7.48 -2.39 -0.02 -0.07 16 4 C -0.52 -28.52 8.84 25.60 0.23 -28.30 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 6 C 0.01 0.48 5.30 84.65 0.45 0.93 16 7 N -0.92 -53.05 11.32 21.44 0.24 -52.80 16 8 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 12 N -0.68 -27.47 6.11 -467.80 -2.86 -30.33 16 13 C 0.09 3.08 3.13 45.99 0.14 3.22 16 14 H 0.06 2.36 7.52 -2.39 -0.02 2.34 16 15 C -0.14 -3.72 4.87 31.32 0.15 -3.57 16 16 C -0.13 -2.63 5.87 31.32 0.18 -2.45 16 17 C 0.10 2.17 0.69 -9.73 -0.01 2.16 16 18 O -0.53 -11.47 13.00 -148.98 -1.94 -13.41 16 19 C 0.43 9.30 2.40 71.98 0.17 9.47 16 20 F -0.18 -4.00 15.78 44.97 0.71 -3.29 16 21 F -0.18 -3.42 16.82 44.97 0.76 -2.67 16 22 F -0.18 -4.50 17.11 44.97 0.77 -3.73 16 23 C -0.10 -2.70 5.54 31.88 0.18 -2.52 16 24 H 0.04 1.49 5.87 -2.39 -0.01 1.48 16 25 H 0.06 3.00 6.07 -2.39 -0.01 2.98 16 26 H 0.03 1.38 8.13 -2.39 -0.02 1.36 16 27 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 28 H 0.34 12.51 7.89 -89.69 -0.71 11.80 16 29 H 0.07 1.93 7.57 -2.39 -0.02 1.92 16 30 H 0.07 1.83 7.38 -2.39 -0.02 1.81 16 31 H 0.09 1.62 7.30 -2.39 -0.02 1.60 16 32 H 0.10 1.60 8.07 -2.39 -0.02 1.58 16 33 H 0.40 4.96 8.81 -74.05 -0.65 4.31 16 34 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.10 2.66 7.40 -2.39 -0.02 2.64 16 Total: -1.00 -61.42 292.72 1.72 -59.69 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -0.23 Total: 17.24 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 2.24 Total: -16.75 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -2.62 Total: -83.14 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -1.94 Total: -13.41 kcal Atomic # 9 Polarization: -11.93 SS G_CDS: 2.24 Total: -9.69 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -61.42 1.72 -59.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390455000.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.152 kcal (2) G-P(sol) polarization free energy of solvation -61.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds