Wall clock time and date at job start Mon Mar 30 2020 05:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29420 * 125.69161 * 2 1 4 4 N 1.26399 * 116.47398 * 179.74790 * 3 2 1 5 5 C 1.29413 * 116.47393 * 0.53150 * 4 3 2 6 6 C 1.50704 * 125.69715 * 179.77197 * 5 4 3 7 7 C 1.53000 * 109.47288 * 89.68994 * 6 5 4 8 8 N 1.46900 * 109.47146 * 180.02562 * 7 6 5 9 9 C 1.46902 * 110.99720 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.46879 * 174.70052 * 9 8 7 11 11 C 1.50702 * 115.55422 * 65.16312 * 10 9 8 12 12 H 1.07997 * 120.00438 * 264.97349 * 11 10 9 13 13 C 1.37878 * 119.99580 * 84.96265 * 11 10 9 14 14 N 1.31518 * 120.00407 * 353.07686 * 13 11 10 15 15 Si 1.86800 * 119.99839 * 173.07098 * 13 11 10 16 16 H 1.48493 * 109.47184 * 60.00084 * 15 13 11 17 17 H 1.48500 * 109.47176 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47159 * 300.00497 * 15 13 11 19 19 C 1.53006 * 117.50036 * 279.49756 * 10 9 8 20 20 C 1.53005 * 117.49999 * 210.83632 * 10 9 8 21 21 S 1.71221 * 125.69970 * 180.02562 * 2 1 3 22 22 H 1.08990 * 109.47022 * 269.95989 * 1 2 3 23 23 H 1.09001 * 109.47175 * 29.96752 * 1 2 3 24 24 H 1.09002 * 109.46320 * 149.96587 * 1 2 3 25 25 H 1.08996 * 109.46941 * 329.68894 * 6 5 4 26 26 H 1.08999 * 109.46800 * 209.69041 * 6 5 4 27 27 H 1.08998 * 109.46872 * 59.99665 * 7 6 5 28 28 H 1.09001 * 109.46913 * 300.00202 * 7 6 5 29 29 H 1.00901 * 111.00145 * 56.04455 * 8 7 6 30 30 H 1.09003 * 109.46893 * 294.69783 * 9 8 7 31 31 H 1.08995 * 109.47185 * 54.70312 * 9 8 7 32 32 H 0.96991 * 119.99751 * 185.04077 * 14 13 11 33 33 H 1.08998 * 117.49369 * 359.97438 * 19 10 9 34 34 H 1.08996 * 117.49893 * 145.01800 * 19 10 9 35 35 H 1.09001 * 117.49895 * 214.97896 * 20 10 9 36 36 H 1.08994 * 117.49474 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0511 0.0000 4 7 3.5098 0.8486 0.0050 5 6 3.8937 -0.3872 -0.0012 6 6 5.3234 -0.8639 -0.0020 7 6 5.8079 -1.0256 1.4402 8 7 7.2017 -1.4897 1.4394 9 6 7.7015 -1.6571 2.8106 10 6 9.1050 -2.2648 2.7711 11 6 10.1695 -1.4021 2.1437 12 1 10.4206 -1.5269 1.1008 13 6 10.8227 -0.4531 2.9012 14 7 10.4261 -0.2058 4.1305 15 14 12.2713 0.4813 2.1815 16 1 11.8296 1.2268 0.9756 17 1 12.7947 1.4368 3.1906 18 1 13.3416 -0.4773 1.8062 19 6 9.2144 -3.7780 2.5725 20 6 9.5201 -3.1610 3.9397 21 16 2.5062 -1.3905 -0.0006 22 1 -0.3633 -0.0007 1.0276 23 1 -0.3633 0.8903 -0.5133 24 1 -0.3632 -0.8897 -0.5144 25 1 5.9493 -0.1344 -0.5159 26 1 5.3863 -1.8229 -0.5161 27 1 5.1819 -1.7551 1.9541 28 1 5.7449 -0.0665 1.9543 29 1 7.7914 -0.8623 0.9133 30 1 7.7397 -0.6861 3.3045 31 1 7.0343 -2.3193 3.3622 32 1 10.8373 0.5114 4.6377 33 1 8.2864 -4.3405 2.4705 34 1 10.0564 -4.1493 1.9884 35 1 10.5631 -3.1267 4.2545 36 1 8.7933 -3.3172 4.7368 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000391902744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:42 Heat of formation + Delta-G solvation = 77.093088 kcal Electronic energy + Delta-G solvation = -17354.049565 eV Core-core repulsion = 14579.901420 eV Total energy + Delta-G solvation = -2774.148145 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.37802 -37.13223 -35.45050 -33.37836 -31.91428 -31.16189 -27.98040 -25.84326 -25.20149 -23.87602 -21.92065 -20.92025 -19.86222 -19.40688 -18.97073 -16.05660 -15.98437 -15.42749 -15.28440 -14.61352 -14.19645 -14.06869 -13.70601 -13.47535 -13.31838 -13.01304 -12.55650 -12.39445 -12.26321 -11.39885 -11.24538 -11.08161 -10.94138 -10.82274 -10.56525 -10.44156 -10.23452 -10.12293 -9.83647 -9.69122 -9.38667 -8.75375 -8.42176 -8.08059 -7.57743 -6.01937 -4.08505 0.30606 0.76212 1.23722 2.45411 3.30765 3.36360 3.38831 3.81619 4.33130 4.40794 4.67255 4.86769 5.03827 5.10284 5.26043 5.27547 5.31769 5.39308 5.52989 5.63941 5.73596 6.03077 6.13870 6.19582 6.47179 6.57500 6.82630 6.83588 6.90936 7.17787 7.52091 7.54872 7.88618 7.90903 8.20463 8.46217 8.50086 8.94724 9.57521 11.05906 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.029077 B = 0.003732 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.743414 B = 7501.660773 C = 8049.999354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.030 4.030 3 N -0.263 5.263 4 N -0.262 5.262 5 C 0.003 3.997 6 C -0.041 4.041 7 C 0.066 3.934 8 N -0.679 5.679 9 C 0.106 3.894 10 C 0.051 3.949 11 C -0.496 4.496 12 H 0.060 0.940 13 C 0.071 3.929 14 N -0.880 5.880 15 Si 0.888 3.112 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.200 4.200 20 C -0.163 4.163 21 S 0.164 5.836 22 H 0.089 0.911 23 H 0.092 0.908 24 H 0.083 0.917 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.065 0.935 28 H 0.030 0.970 29 H 0.350 0.650 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.260 0.740 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.672 -3.258 -7.263 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.309 4.309 3 N -0.101 5.101 4 N -0.099 5.099 5 C -0.276 4.276 6 C -0.083 4.083 7 C -0.066 4.066 8 N -0.311 5.311 9 C -0.023 4.023 10 C 0.051 3.949 11 C -0.534 4.534 12 H 0.078 0.922 13 C -0.133 4.133 14 N -0.517 5.517 15 Si 0.716 3.284 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.237 4.237 20 C -0.201 4.201 21 S 0.408 5.592 22 H 0.108 0.892 23 H 0.110 0.890 24 H 0.102 0.898 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.169 0.831 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.712 -3.467 -7.133 19.407 hybrid contribution 0.933 1.631 0.094 1.882 sum -16.779 -1.836 -7.039 18.288 Atomic orbital electron populations 1.20348 0.84106 1.04508 1.04249 1.29201 1.04242 0.92144 1.05322 1.71444 0.97114 1.26955 1.14555 1.71464 1.06206 1.17189 1.15002 1.29321 1.03382 0.92127 1.02771 1.20286 0.85223 1.02711 1.00034 1.21838 0.92845 0.98784 0.93109 1.60449 1.00510 1.53435 1.16700 1.21447 0.95127 0.98992 0.86703 1.18706 0.92022 0.87051 0.97158 1.20432 1.18219 1.18655 0.96094 0.92169 1.25008 0.96741 0.96919 0.94590 1.69976 1.42083 1.29928 1.09673 0.86729 0.83323 0.79593 0.78767 1.20216 1.21423 1.20228 1.22876 1.00282 0.99696 1.00889 1.22539 1.00342 1.06842 0.90353 1.83719 0.98015 1.11826 1.65665 0.89229 0.88971 0.89802 0.88208 0.88276 0.91651 0.95181 0.83112 0.94455 0.94413 0.93020 0.91698 0.90873 0.90318 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.49 36.01 0.38 -0.08 16 2 C -0.03 -0.33 7.53 -13.29 -0.10 -0.43 16 3 N -0.26 -3.87 11.66 32.58 0.38 -3.49 16 4 N -0.26 -4.15 11.66 32.58 0.38 -3.77 16 5 C 0.00 0.04 6.78 -13.30 -0.09 -0.05 16 6 C -0.04 -0.53 6.08 -27.88 -0.17 -0.70 16 7 C 0.07 1.03 5.66 -3.82 -0.02 1.01 16 8 N -0.68 -12.75 6.47 -113.78 -0.74 -13.49 16 9 C 0.11 2.33 5.54 -3.82 -0.02 2.31 16 10 C 0.05 1.24 1.56 -155.66 -0.24 1.00 16 11 C -0.50 -13.12 8.33 -34.44 -0.29 -13.41 16 12 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 13 C 0.07 1.90 5.39 -17.82 -0.10 1.80 16 14 N -0.88 -24.67 12.95 55.43 0.72 -23.95 16 15 Si 0.89 20.90 29.55 -169.99 -5.02 15.87 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 C -0.20 -4.40 9.96 -26.69 -0.27 -4.66 16 20 C -0.16 -3.84 9.46 -26.69 -0.25 -4.09 16 21 S 0.16 1.66 23.04 -107.50 -2.48 -0.82 16 22 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.35 6.86 8.30 -39.29 -0.33 6.53 16 30 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.04 0.79 8.08 -51.93 -0.42 0.37 16 32 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 323.62 15.07 4.88 4.88 Total: -1.00 -30.01 323.62 -8.41 -38.42 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -5.36 Total: 3.64 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -1.17 Total: -17.29 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.74 Total: -44.70 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.48 Total: -0.82 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.01 -8.41 -38.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391902744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.517 kcal (2) G-P(sol) polarization free energy of solvation -30.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds