Wall clock time and date at job start Mon Mar 30 2020 05:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29420 * 125.69161 * 2 1 4 4 N 1.26399 * 116.47398 * 179.74790 * 3 2 1 5 5 C 1.29413 * 116.47393 * 0.53150 * 4 3 2 6 6 C 1.50704 * 125.69715 * 179.77197 * 5 4 3 7 7 C 1.53000 * 109.47288 * 89.68994 * 6 5 4 8 8 N 1.46900 * 109.47146 * 180.02562 * 7 6 5 9 9 C 1.46902 * 110.99720 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.46879 * 174.70052 * 9 8 7 11 11 C 1.50702 * 115.55422 * 65.16312 * 10 9 8 12 12 H 1.07997 * 120.00438 * 264.97349 * 11 10 9 13 13 C 1.37878 * 119.99580 * 84.96265 * 11 10 9 14 14 N 1.31518 * 120.00407 * 353.07686 * 13 11 10 15 15 Si 1.86800 * 119.99839 * 173.07098 * 13 11 10 16 16 H 1.48493 * 109.47184 * 60.00084 * 15 13 11 17 17 H 1.48500 * 109.47176 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47159 * 300.00497 * 15 13 11 19 19 C 1.53006 * 117.50036 * 279.49756 * 10 9 8 20 20 C 1.53005 * 117.49999 * 210.83632 * 10 9 8 21 21 S 1.71221 * 125.69970 * 180.02562 * 2 1 3 22 22 H 1.08990 * 109.47022 * 269.95989 * 1 2 3 23 23 H 1.09001 * 109.47175 * 29.96752 * 1 2 3 24 24 H 1.09002 * 109.46320 * 149.96587 * 1 2 3 25 25 H 1.08996 * 109.46941 * 329.68894 * 6 5 4 26 26 H 1.08999 * 109.46800 * 209.69041 * 6 5 4 27 27 H 1.08998 * 109.46872 * 59.99665 * 7 6 5 28 28 H 1.09001 * 109.46913 * 300.00202 * 7 6 5 29 29 H 1.00901 * 111.00145 * 56.04455 * 8 7 6 30 30 H 1.09003 * 109.46893 * 294.69783 * 9 8 7 31 31 H 1.08995 * 109.47185 * 54.70312 * 9 8 7 32 32 H 0.96991 * 119.99751 * 185.04077 * 14 13 11 33 33 H 1.08998 * 117.49369 * 359.97438 * 19 10 9 34 34 H 1.08996 * 117.49893 * 145.01800 * 19 10 9 35 35 H 1.09001 * 117.49895 * 214.97896 * 20 10 9 36 36 H 1.08994 * 117.49474 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0511 0.0000 4 7 3.5098 0.8486 0.0050 5 6 3.8937 -0.3872 -0.0012 6 6 5.3234 -0.8639 -0.0020 7 6 5.8079 -1.0256 1.4402 8 7 7.2017 -1.4897 1.4394 9 6 7.7015 -1.6571 2.8106 10 6 9.1050 -2.2648 2.7711 11 6 10.1695 -1.4021 2.1437 12 1 10.4206 -1.5269 1.1008 13 6 10.8227 -0.4531 2.9012 14 7 10.4261 -0.2058 4.1305 15 14 12.2713 0.4813 2.1815 16 1 11.8296 1.2268 0.9756 17 1 12.7947 1.4368 3.1906 18 1 13.3416 -0.4773 1.8062 19 6 9.2144 -3.7780 2.5725 20 6 9.5201 -3.1610 3.9397 21 16 2.5062 -1.3905 -0.0006 22 1 -0.3633 -0.0007 1.0276 23 1 -0.3633 0.8903 -0.5133 24 1 -0.3632 -0.8897 -0.5144 25 1 5.9493 -0.1344 -0.5159 26 1 5.3863 -1.8229 -0.5161 27 1 5.1819 -1.7551 1.9541 28 1 5.7449 -0.0665 1.9543 29 1 7.7914 -0.8623 0.9133 30 1 7.7397 -0.6861 3.3045 31 1 7.0343 -2.3193 3.3622 32 1 10.8373 0.5114 4.6377 33 1 8.2864 -4.3405 2.4705 34 1 10.0564 -4.1493 1.9884 35 1 10.5631 -3.1267 4.2545 36 1 8.7933 -3.3172 4.7368 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000391902744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:41 Heat of formation + Delta-G solvation = 57.426065 kcal Electronic energy + Delta-G solvation = -17354.902391 eV Core-core repulsion = 14579.901420 eV Total energy + Delta-G solvation = -2775.000971 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.34665 -38.85080 -36.85067 -34.42363 -33.93897 -32.20801 -29.05391 -27.62145 -26.54081 -25.16890 -23.25465 -22.71627 -21.08815 -20.60509 -20.30544 -17.90971 -17.07624 -16.68905 -16.56483 -16.43955 -15.74809 -15.25305 -15.15420 -14.40780 -14.27108 -14.09971 -13.90237 -13.59275 -13.35185 -13.13396 -12.93815 -12.82537 -12.66449 -12.33956 -12.25733 -11.95760 -11.49349 -11.30836 -11.15432 -10.71168 -10.67475 -10.60231 -10.37807 -9.92114 -9.19745 -8.07506 -6.18577 -0.57414 -0.07918 0.34085 1.42950 1.44559 1.47908 1.50915 2.43944 2.87806 3.20816 3.32226 3.62164 3.77313 3.95084 4.07814 4.21960 4.26243 4.39205 4.57334 4.62150 4.67191 4.71637 4.75851 4.90697 4.93509 5.02248 5.06899 5.08544 5.10688 5.31810 5.69324 5.70378 5.81642 6.26931 6.49078 6.58773 6.90850 7.49868 7.52467 8.99523 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.029077 B = 0.003732 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.743414 B = 7501.660773 C = 8049.999354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.027 4.027 3 N -0.307 5.307 4 N -0.301 5.301 5 C -0.024 4.024 6 C -0.031 4.031 7 C 0.071 3.929 8 N -0.672 5.672 9 C 0.119 3.881 10 C 0.026 3.974 11 C -0.504 4.504 12 H 0.056 0.944 13 C 0.025 3.975 14 N -0.909 5.909 15 Si 0.945 3.055 16 H -0.270 1.270 17 H -0.290 1.290 18 H -0.274 1.274 19 C -0.174 4.174 20 C -0.171 4.171 21 S 0.235 5.765 22 H 0.105 0.895 23 H 0.096 0.904 24 H 0.112 0.888 25 H 0.092 0.908 26 H 0.120 0.880 27 H 0.078 0.922 28 H 0.009 0.991 29 H 0.344 0.656 30 H 0.001 0.999 31 H 0.050 0.950 32 H 0.257 0.743 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.324 -4.725 -8.379 21.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.306 4.306 3 N -0.145 5.145 4 N -0.138 5.138 5 C -0.304 4.304 6 C -0.072 4.072 7 C -0.060 4.060 8 N -0.302 5.302 9 C -0.010 4.010 10 C 0.025 3.975 11 C -0.542 4.542 12 H 0.074 0.926 13 C -0.175 4.175 14 N -0.547 5.547 15 Si 0.772 3.228 16 H -0.195 1.195 17 H -0.216 1.216 18 H -0.199 1.199 19 C -0.211 4.211 20 C -0.209 4.209 21 S 0.479 5.521 22 H 0.124 0.876 23 H 0.114 0.886 24 H 0.131 0.869 25 H 0.111 0.889 26 H 0.138 0.862 27 H 0.096 0.904 28 H 0.027 0.973 29 H 0.162 0.838 30 H 0.019 0.981 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.373 -4.948 -8.268 21.637 hybrid contribution 1.327 2.008 0.432 2.445 sum -18.047 -2.940 -7.836 19.893 Atomic orbital electron populations 1.20640 0.80998 1.06147 1.05720 1.29978 1.06149 0.91995 1.02483 1.71415 0.97130 1.28819 1.17150 1.71413 1.07326 1.18994 1.16099 1.29288 1.04562 0.92707 1.03810 1.20134 0.85398 1.03592 0.98073 1.21835 0.91175 0.97877 0.95105 1.60437 1.01802 1.53426 1.14569 1.21181 0.94522 0.97129 0.88195 1.18850 0.92580 0.88229 0.97795 1.20709 1.18698 1.18834 0.95969 0.92595 1.25662 0.98907 0.97994 0.94962 1.70091 1.43287 1.30548 1.10803 0.85813 0.80504 0.78400 0.78109 1.19522 1.21625 1.19895 1.22858 1.01199 0.98088 0.98953 1.22468 0.99263 1.07831 0.91357 1.83380 0.95150 1.09519 1.64009 0.87624 0.88569 0.86916 0.88942 0.86175 0.90400 0.97298 0.83848 0.98075 0.93134 0.93363 0.89226 0.90889 0.92695 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.49 71.24 0.75 0.02 16 2 C -0.03 -0.54 7.53 88.47 0.67 0.13 16 3 N -0.31 -8.92 11.66 -50.84 -0.59 -9.51 16 4 N -0.30 -9.58 11.66 -50.84 -0.59 -10.18 16 5 C -0.02 -0.62 6.78 88.47 0.60 -0.02 16 6 C -0.03 -0.77 6.08 29.85 0.18 -0.58 16 7 C 0.07 2.19 5.66 86.30 0.49 2.68 16 8 N -0.67 -24.82 6.47 -513.89 -3.32 -28.14 16 9 C 0.12 5.22 5.54 86.30 0.48 5.70 16 10 C 0.03 1.25 1.56 -52.92 -0.08 1.17 16 11 C -0.50 -26.75 8.33 25.60 0.21 -26.54 16 12 H 0.06 2.95 7.82 -2.91 -0.02 2.92 16 13 C 0.02 1.35 5.39 84.65 0.46 1.80 16 14 N -0.91 -51.97 12.95 21.45 0.28 -51.69 16 15 Si 0.95 43.24 29.55 68.60 2.03 45.27 16 16 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 17 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 19 C -0.17 -7.34 9.96 30.62 0.30 -7.03 16 20 C -0.17 -8.02 9.46 30.62 0.29 -7.73 16 21 S 0.24 4.13 23.04 -56.49 -1.30 2.83 16 22 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 23 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.34 13.49 8.30 -89.69 -0.74 12.75 16 30 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.05 2.06 8.08 -2.39 -0.02 2.04 16 32 H 0.26 14.25 8.32 -92.71 -0.77 13.47 16 33 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 34 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 35 H 0.05 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -65.54 323.62 1.17 -64.37 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.33 Total: 17.44 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: 4.34 Total: -30.40 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -4.23 Total: -99.51 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -1.30 Total: 2.83 kcal Total: -65.54 1.17 -64.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391902744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.800 kcal (2) G-P(sol) polarization free energy of solvation -65.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds