Wall clock time and date at job start Mon Mar 30 2020 06:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.46936 * 2 1 4 4 C 1.50698 * 109.47317 * 239.99486 * 2 1 3 5 5 H 1.07990 * 120.00487 * 274.99943 * 4 2 1 6 6 C 1.37880 * 119.99614 * 94.99642 * 4 2 1 7 7 N 1.31514 * 120.00168 * 184.91602 * 6 4 2 8 8 Si 1.86807 * 119.99983 * 4.91614 * 6 4 2 9 9 H 1.48505 * 109.47030 * 84.83160 * 8 6 4 10 10 H 1.48500 * 109.46584 * 204.82952 * 8 6 4 11 11 H 1.48495 * 109.47025 * 324.83192 * 8 6 4 12 12 N 1.46900 * 109.47044 * 119.99786 * 2 1 3 13 13 C 1.46899 * 111.00188 * 275.00112 * 12 2 1 14 14 C 1.53001 * 109.47330 * 180.02562 * 13 12 2 15 15 C 1.50704 * 109.47117 * 180.02562 * 14 13 12 16 16 C 1.33925 * 125.84512 * 124.99772 * 15 14 13 17 17 N 1.39532 * 107.27271 * 180.24807 * 16 15 14 18 18 C 1.34888 * 106.07344 * 359.63341 * 17 16 15 19 19 N 1.31911 * 109.25751 * 0.37507 * 18 17 16 20 20 S 1.76914 * 110.03962 * 180.20856 * 18 17 16 21 21 C 1.81819 * 96.10974 * 359.74815 * 20 18 17 22 22 C 1.45958 * 136.74875 * 179.77615 * 17 16 15 23 23 H 1.09007 * 109.47061 * 175.04964 * 1 2 3 24 24 H 1.09003 * 109.47003 * 295.04443 * 1 2 3 25 25 H 1.08996 * 109.46930 * 55.05010 * 1 2 3 26 26 H 0.96996 * 120.00344 * 179.97438 * 7 6 4 27 27 H 1.00903 * 111.00536 * 38.95680 * 12 2 1 28 28 H 1.08999 * 109.47383 * 59.99959 * 13 12 2 29 29 H 1.09004 * 109.47203 * 299.99903 * 13 12 2 30 30 H 1.08995 * 109.47550 * 59.99842 * 14 13 12 31 31 H 1.09003 * 109.46881 * 299.99436 * 14 13 12 32 32 H 1.08005 * 126.36402 * 359.97438 * 16 15 14 33 33 H 1.09000 * 110.74425 * 241.50180 * 21 20 18 34 34 H 1.08999 * 110.33732 * 118.92490 * 21 20 18 35 35 H 1.09000 * 108.88930 * 300.78231 * 22 17 16 36 36 H 1.09003 * 108.89504 * 59.20917 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1356 -1.7855 -1.2289 6 6 2.3602 0.0120 -2.3580 7 7 2.7059 -0.6132 -3.4622 8 14 2.3133 1.8790 -2.3175 9 1 3.5989 2.3950 -1.7822 10 1 2.1056 2.3988 -3.6929 11 1 1.1984 2.3273 -1.4451 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5962 -0.5328 3.5742 15 6 2.6600 0.4059 4.7515 16 6 2.0705 0.2158 5.9390 17 7 2.3767 1.3201 6.7350 18 6 3.1512 2.1234 5.9773 19 7 3.3161 1.5744 4.7892 20 16 3.6088 3.5654 6.8945 21 6 2.7179 3.1182 8.4151 22 6 2.0775 1.7685 8.0914 23 1 -0.3633 -1.0239 -0.0887 24 1 -0.3633 0.4350 0.9311 25 1 -0.3633 0.5887 -0.8423 26 1 2.9362 -0.1050 -4.2556 27 1 1.4496 -1.4979 1.4101 28 1 1.0870 0.6164 2.5526 29 1 2.7588 1.0462 2.1183 30 1 3.5916 -0.9262 3.3684 31 1 1.9200 -1.3566 3.8031 32 1 1.4664 -0.6324 6.2255 33 1 1.9517 3.8585 8.6455 34 1 3.4147 3.0201 9.2475 35 1 0.9968 1.8545 8.2043 36 1 2.4454 1.0248 8.7982 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393750609.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:51 Heat of formation + Delta-G solvation = 72.496779 kcal Electronic energy + Delta-G solvation = -17502.024512 eV Core-core repulsion = 14727.677056 eV Total energy + Delta-G solvation = -2774.347456 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.18740 -36.69542 -35.78427 -32.94708 -31.53800 -30.62637 -29.21014 -26.69397 -25.10935 -24.85099 -22.44212 -21.23029 -20.16537 -19.71539 -18.07046 -16.94558 -16.79166 -15.79316 -15.00040 -14.78452 -14.56350 -14.33725 -14.16123 -13.62001 -13.41911 -13.00021 -12.82394 -12.61123 -12.28735 -11.98919 -11.71490 -11.33275 -11.12352 -10.93774 -10.65647 -10.58079 -10.07656 -9.88649 -9.76773 -9.64212 -9.39228 -9.03211 -8.41343 -7.72314 -7.23836 -5.95615 -3.92111 0.67168 1.52684 1.62381 2.28968 2.92654 3.39333 3.45931 3.48549 3.52228 3.95472 4.47455 4.52887 4.56847 4.73647 4.75289 4.88210 5.16345 5.32161 5.58798 5.70082 5.81723 5.86365 6.03469 6.32392 6.40794 6.45113 6.56065 6.64057 6.71682 6.73971 6.94894 7.23300 7.80735 7.82692 8.08751 8.52332 8.78305 9.12260 9.68105 11.18126 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032162 B = 0.003732 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.387919 B = 7501.480577 C = 7985.280522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.179 3.821 3 H 0.036 0.964 4 C -0.490 4.490 5 H 0.076 0.924 6 C 0.069 3.931 7 N -0.903 5.903 8 Si 0.875 3.125 9 H -0.274 1.274 10 H -0.290 1.290 11 H -0.269 1.269 12 N -0.675 5.675 13 C 0.066 3.934 14 C -0.033 4.033 15 C 0.044 3.956 16 C -0.037 4.037 17 N -0.491 5.491 18 C 0.187 3.813 19 N -0.442 5.442 20 S -0.004 6.004 21 C -0.122 4.122 22 C 0.098 3.902 23 H 0.048 0.952 24 H 0.019 0.981 25 H 0.048 0.952 26 H 0.262 0.738 27 H 0.325 0.675 28 H 0.014 0.986 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.177 0.823 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.890 6.037 28.422 29.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.071 3.929 3 H 0.054 0.946 4 C -0.528 4.528 5 H 0.094 0.906 6 C -0.132 4.132 7 N -0.542 5.542 8 Si 0.703 3.297 9 H -0.200 1.200 10 H -0.216 1.216 11 H -0.194 1.194 12 N -0.305 5.305 13 C -0.065 4.065 14 C -0.072 4.072 15 C -0.087 4.087 16 C -0.168 4.168 17 N -0.182 5.182 18 C -0.183 4.183 19 N -0.165 5.165 20 S 0.225 5.775 21 C -0.271 4.271 22 C -0.025 4.025 23 H 0.067 0.933 24 H 0.038 0.962 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.142 0.858 28 H 0.032 0.968 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.194 0.806 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.117 0.883 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.124 7.432 27.321 28.336 hybrid contribution -2.222 -0.267 1.120 2.503 sum -3.346 7.165 28.441 29.520 Atomic orbital electron populations 1.22636 1.01131 1.00634 0.98542 1.19644 0.89277 0.94790 0.89182 0.94570 1.20883 1.42446 0.95686 0.93798 0.90581 1.24970 0.94795 0.98007 0.95417 1.69894 1.47030 1.35577 1.01681 0.86914 0.79121 0.86887 0.76825 1.20007 1.21622 1.19396 1.60906 1.57780 1.08873 1.02911 1.21854 0.98298 0.96210 0.90104 1.19962 1.03174 0.94418 0.89627 1.20758 0.98535 0.94230 0.95205 1.22575 1.09346 0.93177 0.91703 1.46874 1.41037 1.18395 1.11869 1.25573 1.01460 0.98273 0.93024 1.70466 1.22562 1.08227 1.15217 1.86252 1.64639 1.19574 1.07012 1.24357 1.03940 0.98519 1.00280 1.21478 1.02785 0.96409 0.81844 0.93286 0.96206 0.93325 0.92770 0.85842 0.96782 0.90947 0.89370 0.90807 0.80553 0.85938 0.85939 0.88290 0.88288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.75 9.16 37.16 0.34 -3.41 16 2 C 0.18 4.45 2.23 -68.87 -0.15 4.29 16 3 H 0.04 0.94 4.95 -51.93 -0.26 0.69 16 4 C -0.49 -14.28 9.19 -34.44 -0.32 -14.60 16 5 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 6 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 7 N -0.90 -28.45 13.96 55.43 0.77 -27.68 16 8 Si 0.87 22.69 26.99 -169.99 -4.59 18.10 16 9 H -0.27 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 11 H -0.27 -6.71 6.82 56.52 0.39 -6.32 16 12 N -0.68 -14.59 6.23 -107.95 -0.67 -15.26 16 13 C 0.07 1.24 5.45 -3.82 -0.02 1.22 16 14 C -0.03 -0.51 6.04 -27.88 -0.17 -0.68 16 15 C 0.04 0.67 6.32 -83.13 -0.53 0.14 16 16 C -0.04 -0.45 11.88 -15.56 -0.18 -0.63 16 17 N -0.49 -5.44 3.39 -116.92 -0.40 -5.84 16 18 C 0.19 2.64 8.90 -89.33 -0.80 1.84 16 19 N -0.44 -7.69 11.30 -9.80 -0.11 -7.81 16 20 S 0.00 -0.04 23.24 -107.50 -2.50 -2.53 16 21 C -0.12 -0.53 7.37 37.08 0.27 -0.26 16 22 C 0.10 0.56 7.44 -4.41 -0.03 0.52 16 23 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.02 0.38 7.35 -51.93 -0.38 0.00 16 25 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 27 H 0.32 6.36 8.48 -39.29 -0.33 6.03 16 28 H 0.01 0.26 7.36 -51.93 -0.38 -0.12 16 29 H 0.07 1.55 8.06 -51.93 -0.42 1.13 16 30 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 32 H 0.18 1.50 8.06 -52.48 -0.42 1.07 16 33 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 311.32 15.07 4.69 4.69 Total: -1.00 -35.70 311.32 -9.63 -45.33 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.15 Total: 0.57 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -1.68 Total: -9.58 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.41 Total: -56.59 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.59 Total: 18.10 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.50 Total: -2.53 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.70 -9.63 -45.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393750609.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.831 kcal (2) G-P(sol) polarization free energy of solvation -35.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds