Wall clock time and date at job start Mon Mar 30 2020 06:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.46936 * 2 1 4 4 C 1.50698 * 109.47317 * 239.99486 * 2 1 3 5 5 H 1.07990 * 120.00487 * 274.99943 * 4 2 1 6 6 C 1.37880 * 119.99614 * 94.99642 * 4 2 1 7 7 N 1.31514 * 120.00168 * 184.91602 * 6 4 2 8 8 Si 1.86807 * 119.99983 * 4.91614 * 6 4 2 9 9 H 1.48505 * 109.47030 * 84.83160 * 8 6 4 10 10 H 1.48500 * 109.46584 * 204.82952 * 8 6 4 11 11 H 1.48495 * 109.47025 * 324.83192 * 8 6 4 12 12 N 1.46900 * 109.47044 * 119.99786 * 2 1 3 13 13 C 1.46899 * 111.00188 * 275.00112 * 12 2 1 14 14 C 1.53001 * 109.47330 * 180.02562 * 13 12 2 15 15 C 1.50704 * 109.47117 * 180.02562 * 14 13 12 16 16 C 1.33925 * 125.84512 * 124.99772 * 15 14 13 17 17 N 1.39532 * 107.27271 * 180.24807 * 16 15 14 18 18 C 1.34888 * 106.07344 * 359.63341 * 17 16 15 19 19 N 1.31911 * 109.25751 * 0.37507 * 18 17 16 20 20 S 1.76914 * 110.03962 * 180.20856 * 18 17 16 21 21 C 1.81819 * 96.10974 * 359.74815 * 20 18 17 22 22 C 1.45958 * 136.74875 * 179.77615 * 17 16 15 23 23 H 1.09007 * 109.47061 * 175.04964 * 1 2 3 24 24 H 1.09003 * 109.47003 * 295.04443 * 1 2 3 25 25 H 1.08996 * 109.46930 * 55.05010 * 1 2 3 26 26 H 0.96996 * 120.00344 * 179.97438 * 7 6 4 27 27 H 1.00903 * 111.00536 * 38.95680 * 12 2 1 28 28 H 1.08999 * 109.47383 * 59.99959 * 13 12 2 29 29 H 1.09004 * 109.47203 * 299.99903 * 13 12 2 30 30 H 1.08995 * 109.47550 * 59.99842 * 14 13 12 31 31 H 1.09003 * 109.46881 * 299.99436 * 14 13 12 32 32 H 1.08005 * 126.36402 * 359.97438 * 16 15 14 33 33 H 1.09000 * 110.74425 * 241.50180 * 21 20 18 34 34 H 1.08999 * 110.33732 * 118.92490 * 21 20 18 35 35 H 1.09000 * 108.88930 * 300.78231 * 22 17 16 36 36 H 1.09003 * 108.89504 * 59.20917 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1356 -1.7855 -1.2289 6 6 2.3602 0.0120 -2.3580 7 7 2.7059 -0.6132 -3.4622 8 14 2.3133 1.8790 -2.3175 9 1 3.5989 2.3950 -1.7822 10 1 2.1056 2.3988 -3.6929 11 1 1.1984 2.3273 -1.4451 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5962 -0.5328 3.5742 15 6 2.6600 0.4059 4.7515 16 6 2.0705 0.2158 5.9390 17 7 2.3767 1.3201 6.7350 18 6 3.1512 2.1234 5.9773 19 7 3.3161 1.5744 4.7892 20 16 3.6088 3.5654 6.8945 21 6 2.7179 3.1182 8.4151 22 6 2.0775 1.7685 8.0914 23 1 -0.3633 -1.0239 -0.0887 24 1 -0.3633 0.4350 0.9311 25 1 -0.3633 0.5887 -0.8423 26 1 2.9362 -0.1050 -4.2556 27 1 1.4496 -1.4979 1.4101 28 1 1.0870 0.6164 2.5526 29 1 2.7588 1.0462 2.1183 30 1 3.5916 -0.9262 3.3684 31 1 1.9200 -1.3566 3.8031 32 1 1.4664 -0.6324 6.2255 33 1 1.9517 3.8585 8.6455 34 1 3.4147 3.0201 9.2475 35 1 0.9968 1.8545 8.2043 36 1 2.4454 1.0248 8.7982 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393750609.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:50 Heat of formation + Delta-G solvation = 46.652043 kcal Electronic energy + Delta-G solvation = -17503.145224 eV Core-core repulsion = 14727.677056 eV Total energy + Delta-G solvation = -2775.468168 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.07514 -38.24894 -36.73700 -34.76992 -33.23207 -31.41126 -30.60123 -27.97530 -27.23040 -25.43901 -23.82011 -22.12292 -21.86173 -21.01621 -19.02893 -18.81602 -17.49290 -16.70735 -16.59297 -16.31055 -15.76561 -15.35153 -15.13542 -14.91211 -14.66508 -14.40770 -13.98614 -13.91873 -13.62083 -13.35690 -13.15199 -12.93408 -12.78940 -12.60598 -12.06916 -11.90060 -11.77682 -11.72694 -11.20295 -10.98830 -10.69047 -10.58602 -10.32108 -8.98428 -8.52893 -8.26755 -6.27288 -0.02834 0.74329 0.96753 1.31169 1.34893 1.42725 1.64096 1.88060 2.34191 3.04171 3.08206 3.53476 3.68820 3.72829 4.14079 4.18195 4.28347 4.44481 4.45005 4.50242 4.51004 4.55442 4.68719 4.72997 4.80529 4.93987 5.01573 5.17503 5.21388 5.42658 5.57098 5.69124 5.87406 6.06911 6.66668 6.77699 6.86599 6.86903 7.36469 8.90715 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032162 B = 0.003732 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.387919 B = 7501.480577 C = 7985.280522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.181 3.819 3 H 0.024 0.976 4 C -0.494 4.494 5 H 0.038 0.962 6 C 0.012 3.988 7 N -0.949 5.949 8 Si 0.937 3.063 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.251 1.251 12 N -0.687 5.687 13 C 0.077 3.923 14 C -0.020 4.020 15 C 0.003 3.997 16 C -0.016 4.016 17 N -0.485 5.485 18 C 0.165 3.835 19 N -0.506 5.506 20 S -0.045 6.045 21 C -0.100 4.100 22 C 0.086 3.914 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.040 0.960 26 H 0.265 0.735 27 H 0.339 0.661 28 H 0.021 0.979 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.216 0.784 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.124 0.876 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.686 6.918 32.232 33.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.071 3.929 3 H 0.042 0.958 4 C -0.533 4.533 5 H 0.056 0.944 6 C -0.185 4.185 7 N -0.590 5.590 8 Si 0.762 3.238 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.175 1.175 12 N -0.318 5.318 13 C -0.053 4.053 14 C -0.059 4.059 15 C -0.128 4.128 16 C -0.148 4.148 17 N -0.174 5.174 18 C -0.206 4.206 19 N -0.229 5.229 20 S 0.184 5.816 21 C -0.249 4.249 22 C -0.036 4.036 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.157 0.843 28 H 0.039 0.961 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.123 0.877 32 H 0.232 0.768 33 H 0.168 0.832 34 H 0.170 0.830 35 H 0.142 0.858 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.936 8.318 31.183 32.407 hybrid contribution -1.655 -0.601 0.097 1.764 sum -4.592 7.718 31.279 32.543 Atomic orbital electron populations 1.22457 0.98616 1.01260 0.99727 1.19483 0.91045 0.93602 0.88729 0.95767 1.21171 1.42010 0.94277 0.95838 0.94356 1.25770 0.94770 1.02898 0.95030 1.70029 1.48871 1.37555 1.02556 0.85911 0.79456 0.81018 0.77447 1.20257 1.20663 1.17520 1.60643 1.58268 1.09740 1.03116 1.21721 0.97944 0.95238 0.90423 1.19778 1.02680 0.94966 0.88463 1.20756 1.00922 0.94489 0.96586 1.23013 1.07501 0.93754 0.90564 1.47265 1.39492 1.17322 1.13346 1.25995 1.02012 0.99661 0.92904 1.70307 1.24746 1.09961 1.17901 1.86302 1.66143 1.18994 1.10207 1.24668 1.04396 0.98421 0.97369 1.21979 1.04647 0.97525 0.79421 0.92666 0.93332 0.94068 0.92580 0.84332 0.96088 0.94229 0.91163 0.87658 0.76753 0.83173 0.82988 0.85778 0.85554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.86 9.16 71.98 0.66 -6.20 16 2 C 0.18 8.94 2.23 44.17 0.10 9.04 16 3 H 0.02 1.26 4.95 -2.39 -0.01 1.25 16 4 C -0.49 -29.55 9.19 25.60 0.24 -29.32 16 5 H 0.04 2.52 8.06 -2.92 -0.02 2.49 16 6 C 0.01 0.74 5.47 84.66 0.46 1.21 16 7 N -0.95 -61.52 13.96 21.45 0.30 -61.22 16 8 Si 0.94 47.45 26.99 68.60 1.85 49.30 16 9 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 10 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 11 H -0.25 -11.90 6.82 99.48 0.68 -11.22 16 12 N -0.69 -29.66 6.23 -495.46 -3.09 -32.75 16 13 C 0.08 2.90 5.45 86.30 0.47 3.37 16 14 C -0.02 -0.61 6.04 29.85 0.18 -0.43 16 15 C 0.00 0.08 6.32 41.24 0.26 0.34 16 16 C -0.02 -0.33 11.88 82.48 0.98 0.65 16 17 N -0.48 -9.38 3.39 -523.83 -1.78 -11.15 16 18 C 0.17 4.54 8.90 179.90 1.60 6.14 16 19 N -0.51 -17.91 11.30 -184.92 -2.09 -20.00 16 20 S -0.04 -0.84 23.24 -56.49 -1.31 -2.15 16 21 C -0.10 -0.45 7.37 71.93 0.53 0.08 16 22 C 0.09 0.57 7.44 86.43 0.64 1.21 16 23 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 24 H 0.05 1.78 7.35 -2.39 -0.02 1.76 16 25 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 27 H 0.34 12.98 8.48 -89.69 -0.76 12.22 16 28 H 0.02 0.76 7.36 -2.39 -0.02 0.75 16 29 H 0.04 1.74 8.06 -2.39 -0.02 1.72 16 30 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.11 2.43 8.10 -2.39 -0.02 2.41 16 32 H 0.22 2.64 8.06 -2.91 -0.02 2.62 16 33 H 0.15 -0.08 8.14 -2.39 -0.02 -0.10 16 34 H 0.15 -0.15 8.14 -2.39 -0.02 -0.17 16 35 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 Total: -1.00 -82.67 311.32 0.30 -82.37 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 0.29 Total: 9.52 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 6.12 Total: -13.92 kcal Atomic # 7 Polarization: -118.47 SS G_CDS: -6.65 Total: -125.12 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 1.85 Total: 49.30 kcal Atomic # 16 Polarization: -0.84 SS G_CDS: -1.31 Total: -2.15 kcal Total: -82.67 0.30 -82.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393750609.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.022 kcal (2) G-P(sol) polarization free energy of solvation -82.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds