Wall clock time and date at job start Mon Mar 30 2020 06:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46911 * 110.99614 * 85.00357 * 12 2 1 14 14 C 1.52993 * 109.46779 * 179.97438 * 13 12 2 15 15 C 1.50701 * 109.47197 * 179.97438 * 14 13 12 16 16 C 1.33926 * 125.84596 * 124.71047 * 15 14 13 17 17 N 1.39533 * 107.27161 * 179.91431 * 16 15 14 18 18 C 1.34884 * 106.07986 * 0.35192 * 17 16 15 19 19 N 1.31916 * 109.25200 * 359.78584 * 18 17 16 20 20 S 1.76905 * 110.04406 * 179.76709 * 18 17 16 21 21 C 1.81811 * 96.11136 * 0.02562 * 20 18 17 22 22 C 1.45962 * 136.74504 * 180.02562 * 17 16 15 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 27 27 H 1.00897 * 111.00496 * 208.95166 * 12 2 1 28 28 H 1.09000 * 109.46786 * 299.99838 * 13 12 2 29 29 H 1.09000 * 109.46923 * 59.99884 * 13 12 2 30 30 H 1.09000 * 109.47888 * 300.00082 * 14 13 12 31 31 H 1.09000 * 109.47454 * 60.00250 * 14 13 12 32 32 H 1.07995 * 126.35980 * 0.04404 * 16 15 14 33 33 H 1.08999 * 110.47403 * 241.30399 * 21 20 18 34 34 H 1.09002 * 110.61202 * 118.71805 * 21 20 18 35 35 H 1.09001 * 108.89202 * 301.08922 * 22 17 16 36 36 H 1.09003 * 108.89560 * 59.51419 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5962 -0.5330 -3.5741 15 6 2.6601 0.4056 -4.7514 16 6 3.7423 0.6502 -5.5016 17 7 3.3684 1.5722 -6.4798 18 6 2.0657 1.8434 -6.2593 19 7 1.6449 1.1431 -5.2235 20 16 1.4811 3.0170 -7.4469 21 6 3.0575 3.1954 -8.3349 22 6 4.0131 2.2602 -7.5941 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7082 1.1609 3.4844 27 1 2.9173 -1.1206 -1.0288 28 1 1.0871 0.6162 -2.5525 29 1 2.7589 1.0461 -2.1182 30 1 3.5917 -0.9264 -3.3683 31 1 1.9202 -1.3568 -3.8030 32 1 4.7217 0.2133 -5.3743 33 1 3.4121 4.2246 -8.2791 34 1 2.9496 2.8859 -9.3745 35 1 4.8515 2.8426 -7.2117 36 1 4.3937 1.5172 -8.2951 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393750612.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:54 Heat of formation + Delta-G solvation = 69.973837 kcal Electronic energy + Delta-G solvation = -17415.532996 eV Core-core repulsion = 14641.076138 eV Total energy + Delta-G solvation = -2774.456859 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.12710 -36.50819 -35.59776 -33.06954 -31.24777 -30.55499 -28.74209 -26.53266 -25.06902 -24.79844 -22.37368 -21.17833 -19.94204 -19.58921 -18.01909 -16.86554 -16.35911 -15.73234 -14.97806 -14.76140 -14.48560 -14.34019 -14.11962 -13.49411 -13.35669 -13.04864 -12.78347 -12.49284 -11.99022 -11.78826 -11.20498 -11.07983 -10.89420 -10.65749 -10.60253 -10.13797 -10.05299 -9.99553 -9.72920 -9.70881 -9.31379 -8.71000 -8.39618 -7.66903 -7.13628 -5.94479 -4.00911 0.72037 1.57322 1.68337 2.34535 2.98922 3.34012 3.40469 3.44638 3.57076 4.00035 4.46217 4.53161 4.62228 4.78155 4.80042 5.00755 5.25819 5.36507 5.66298 5.79786 5.87815 5.98374 6.14929 6.53097 6.62406 6.76077 6.79850 7.04980 7.29278 7.37561 7.63968 7.86122 7.87394 8.01969 8.38746 8.51090 8.79491 9.11155 9.64569 11.11870 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.044043 B = 0.003200 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.590466 B = 8747.822153 C = 9019.124876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.212 3.788 3 H -0.001 1.001 4 C -0.517 4.517 5 H 0.060 0.940 6 C 0.060 3.940 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.690 5.690 13 C 0.070 3.930 14 C -0.033 4.033 15 C 0.045 3.955 16 C -0.038 4.038 17 N -0.491 5.491 18 C 0.187 3.813 19 N -0.442 5.442 20 S -0.004 6.004 21 C -0.122 4.122 22 C 0.098 3.902 23 H 0.006 0.994 24 H 0.079 0.921 25 H 0.031 0.969 26 H 0.260 0.740 27 H 0.327 0.673 28 H 0.072 0.928 29 H 0.014 0.986 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.177 0.823 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.005 4.485 -23.794 25.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.017 0.983 4 C -0.556 4.556 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.321 5.321 13 C -0.060 4.060 14 C -0.072 4.072 15 C -0.086 4.086 16 C -0.168 4.168 17 N -0.182 5.182 18 C -0.184 4.184 19 N -0.164 5.164 20 S 0.225 5.775 21 C -0.271 4.271 22 C -0.025 4.025 23 H 0.025 0.975 24 H 0.098 0.902 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.144 0.856 28 H 0.090 0.910 29 H 0.033 0.967 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.194 0.806 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.117 0.883 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.580 4.931 -23.785 24.924 hybrid contribution 3.128 -0.397 0.963 3.297 sum 8.709 4.534 -22.823 24.845 Atomic orbital electron populations 1.21702 0.97866 0.99303 0.99398 1.19083 0.92696 0.92258 0.85528 0.98289 1.21296 1.31319 1.12431 0.90530 0.92216 1.24935 0.95118 0.95044 0.99021 1.69913 1.36648 1.22986 1.23340 0.86532 0.78400 0.80071 0.82578 1.20847 1.21235 1.19842 1.60734 1.31742 1.33412 1.06180 1.21780 1.00428 0.93612 0.90165 1.19975 1.01983 0.95532 0.89699 1.20763 0.88585 1.00187 0.99081 1.22579 1.01650 0.99269 0.93326 1.46865 1.10559 1.35442 1.25328 1.25561 0.85072 1.05497 1.02235 1.70461 1.30022 1.08748 1.07202 1.86218 1.12927 1.49163 1.29201 1.24354 0.95248 1.04232 1.03250 1.21476 0.96236 0.96653 0.88155 0.97513 0.90238 0.95004 0.92995 0.85614 0.90988 0.96749 0.90860 0.89714 0.80568 0.85958 0.85960 0.88294 0.88324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.33 9.19 37.16 0.34 -2.99 16 2 C 0.21 5.71 2.60 -68.86 -0.18 5.53 16 3 H 0.00 -0.02 7.80 -51.93 -0.40 -0.42 16 4 C -0.52 -14.72 8.59 -34.44 -0.30 -15.02 16 5 H 0.06 1.66 7.62 -52.49 -0.40 1.26 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -26.37 11.32 55.43 0.63 -25.75 16 8 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 12 N -0.69 -15.68 6.30 -107.95 -0.68 -16.36 16 13 C 0.07 1.42 5.45 -3.82 -0.02 1.40 16 14 C -0.03 -0.53 6.03 -27.89 -0.17 -0.70 16 15 C 0.04 0.71 6.32 -83.13 -0.53 0.19 16 16 C -0.04 -0.47 11.88 -15.56 -0.18 -0.66 16 17 N -0.49 -5.70 3.39 -116.92 -0.40 -6.09 16 18 C 0.19 2.71 8.90 -89.33 -0.80 1.92 16 19 N -0.44 -7.88 11.30 -9.80 -0.11 -7.99 16 20 S 0.00 -0.04 23.24 -107.50 -2.50 -2.54 16 21 C -0.12 -0.58 7.37 37.09 0.27 -0.30 16 22 C 0.10 0.60 7.44 -4.40 -0.03 0.57 16 23 H 0.01 0.15 7.45 -51.93 -0.39 -0.24 16 24 H 0.08 2.28 6.07 -51.93 -0.32 1.96 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.33 7.02 8.22 -39.29 -0.32 6.70 16 28 H 0.07 1.60 7.44 -51.93 -0.39 1.22 16 29 H 0.01 0.30 8.06 -51.93 -0.42 -0.12 16 30 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 31 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.12 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.12 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 311.47 15.07 4.69 4.69 Total: -1.00 -34.26 311.47 -10.22 -44.48 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.15 Total: 1.25 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -1.68 Total: -8.43 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.56 Total: -56.19 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.50 Total: -2.54 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.26 -10.22 -44.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393750612.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.453 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds