Wall clock time and date at job start Mon Mar 30 2020 06:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46911 * 110.99614 * 85.00357 * 12 2 1 14 14 C 1.52993 * 109.46779 * 179.97438 * 13 12 2 15 15 C 1.50701 * 109.47197 * 179.97438 * 14 13 12 16 16 C 1.33926 * 125.84596 * 124.71047 * 15 14 13 17 17 N 1.39533 * 107.27161 * 179.91431 * 16 15 14 18 18 C 1.34884 * 106.07986 * 0.35192 * 17 16 15 19 19 N 1.31916 * 109.25200 * 359.78584 * 18 17 16 20 20 S 1.76905 * 110.04406 * 179.76709 * 18 17 16 21 21 C 1.81811 * 96.11136 * 0.02562 * 20 18 17 22 22 C 1.45962 * 136.74504 * 180.02562 * 17 16 15 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 27 27 H 1.00897 * 111.00496 * 208.95166 * 12 2 1 28 28 H 1.09000 * 109.46786 * 299.99838 * 13 12 2 29 29 H 1.09000 * 109.46923 * 59.99884 * 13 12 2 30 30 H 1.09000 * 109.47888 * 300.00082 * 14 13 12 31 31 H 1.09000 * 109.47454 * 60.00250 * 14 13 12 32 32 H 1.07995 * 126.35980 * 0.04404 * 16 15 14 33 33 H 1.08999 * 110.47403 * 241.30399 * 21 20 18 34 34 H 1.09002 * 110.61202 * 118.71805 * 21 20 18 35 35 H 1.09001 * 108.89202 * 301.08922 * 22 17 16 36 36 H 1.09003 * 108.89560 * 59.51419 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5962 -0.5330 -3.5741 15 6 2.6601 0.4056 -4.7514 16 6 3.7423 0.6502 -5.5016 17 7 3.3684 1.5722 -6.4798 18 6 2.0657 1.8434 -6.2593 19 7 1.6449 1.1431 -5.2235 20 16 1.4811 3.0170 -7.4469 21 6 3.0575 3.1954 -8.3349 22 6 4.0131 2.2602 -7.5941 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7082 1.1609 3.4844 27 1 2.9173 -1.1206 -1.0288 28 1 1.0871 0.6162 -2.5525 29 1 2.7589 1.0461 -2.1182 30 1 3.5917 -0.9264 -3.3683 31 1 1.9202 -1.3568 -3.8030 32 1 4.7217 0.2133 -5.3743 33 1 3.4121 4.2246 -8.2791 34 1 2.9496 2.8859 -9.3745 35 1 4.8515 2.8426 -7.2117 36 1 4.3937 1.5172 -8.2951 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393750612.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:53 Heat of formation + Delta-G solvation = 46.425155 kcal Electronic energy + Delta-G solvation = -17416.554144 eV Core-core repulsion = 14641.076138 eV Total energy + Delta-G solvation = -2775.478006 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.07482 -38.09471 -36.72413 -34.90138 -32.83874 -31.41056 -30.31685 -28.06283 -27.22119 -25.43749 -23.89054 -22.10710 -21.67962 -21.05721 -18.82247 -18.49837 -17.48184 -16.93335 -16.61054 -16.18133 -15.75760 -15.40074 -15.15637 -14.91527 -14.67152 -14.14245 -13.97404 -13.70044 -13.45616 -13.26948 -12.96282 -12.83405 -12.58247 -12.30293 -12.22805 -12.03721 -11.82875 -11.72597 -10.99526 -10.90139 -10.58951 -10.57431 -10.31733 -9.08545 -8.52668 -8.12517 -6.28135 -0.02865 0.74051 0.96858 1.43004 1.44893 1.56115 1.63971 1.87840 2.42644 3.07944 3.15512 3.54306 3.69393 3.72991 4.13356 4.19188 4.27839 4.47069 4.50480 4.51263 4.57253 4.68407 4.80702 4.93764 5.06184 5.13972 5.16701 5.20305 5.46152 5.56144 5.66959 5.84054 5.87322 6.19964 6.46740 6.76772 6.86301 7.03055 7.42550 8.93874 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.044043 B = 0.003200 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.590466 B = 8747.822153 C = 9019.124876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.215 3.785 3 H -0.038 1.038 4 C -0.538 4.538 5 H 0.066 0.934 6 C 0.008 3.992 7 N -0.922 5.922 8 Si 0.970 3.030 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.264 1.264 12 N -0.685 5.685 13 C 0.081 3.919 14 C -0.017 4.017 15 C 0.002 3.998 16 C -0.017 4.017 17 N -0.485 5.485 18 C 0.165 3.835 19 N -0.505 5.505 20 S -0.042 6.042 21 C -0.100 4.100 22 C 0.085 3.915 23 H 0.012 0.988 24 H 0.058 0.942 25 H 0.031 0.969 26 H 0.263 0.737 27 H 0.337 0.663 28 H 0.042 0.958 29 H 0.002 0.998 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.215 0.785 33 H 0.149 0.851 34 H 0.154 0.846 35 H 0.122 0.878 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.653 4.057 -25.447 27.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 H -0.020 1.020 4 C -0.576 4.576 5 H 0.084 0.916 6 C -0.190 4.190 7 N -0.561 5.561 8 Si 0.795 3.205 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.189 1.189 12 N -0.316 5.316 13 C -0.049 4.049 14 C -0.056 4.056 15 C -0.128 4.128 16 C -0.150 4.150 17 N -0.175 5.175 18 C -0.206 4.206 19 N -0.228 5.228 20 S 0.186 5.814 21 C -0.248 4.248 22 C -0.036 4.036 23 H 0.031 0.969 24 H 0.077 0.923 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.155 0.845 28 H 0.060 0.940 29 H 0.020 0.980 30 H 0.120 0.880 31 H 0.095 0.905 32 H 0.232 0.768 33 H 0.167 0.833 34 H 0.172 0.828 35 H 0.140 0.860 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.247 4.511 -25.486 27.164 hybrid contribution 2.331 -0.166 1.337 2.692 sum 10.578 4.346 -24.149 26.720 Atomic orbital electron populations 1.21544 0.98102 0.98878 0.98619 1.18902 0.92577 0.90604 0.87246 1.02007 1.21609 1.31816 1.12836 0.91349 0.91619 1.25852 0.95102 0.95703 1.02384 1.70057 1.37506 1.24320 1.24235 0.85379 0.77927 0.79091 0.78142 1.19914 1.20929 1.18872 1.60630 1.32357 1.33325 1.05252 1.21661 0.98728 0.93445 0.91069 1.19765 1.02993 0.94868 0.87967 1.20759 0.89864 1.01756 1.00391 1.23006 1.01864 0.98022 0.92124 1.47259 1.09863 1.34558 1.25784 1.26025 0.86646 1.05786 1.02111 1.70298 1.32188 1.10819 1.09536 1.86261 1.17855 1.48121 1.29149 1.24672 0.90788 1.05777 1.03613 1.21988 0.96575 0.97728 0.87323 0.96931 0.92323 0.95027 0.92820 0.84534 0.93957 0.97961 0.87952 0.90533 0.76849 0.83251 0.82798 0.85954 0.85417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.28 9.19 71.98 0.66 -5.62 16 2 C 0.22 11.98 2.60 44.17 0.11 12.10 16 3 H -0.04 -2.33 7.80 -2.39 -0.02 -2.35 16 4 C -0.54 -30.91 8.59 25.60 0.22 -30.69 16 5 H 0.07 3.61 7.62 -2.91 -0.02 3.59 16 6 C 0.01 0.48 5.30 84.66 0.45 0.93 16 7 N -0.92 -55.67 11.32 21.45 0.24 -55.43 16 8 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 11 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 12 N -0.68 -31.78 6.30 -495.43 -3.12 -34.90 16 13 C 0.08 3.41 5.45 86.30 0.47 3.88 16 14 C -0.02 -0.56 6.03 29.85 0.18 -0.38 16 15 C 0.00 0.08 6.32 41.24 0.26 0.34 16 16 C -0.02 -0.41 11.88 82.48 0.98 0.57 16 17 N -0.49 -10.19 3.39 -523.83 -1.78 -11.97 16 18 C 0.17 4.78 8.90 179.90 1.60 6.38 16 19 N -0.50 -18.71 11.30 -184.93 -2.09 -20.80 16 20 S -0.04 -0.83 23.24 -56.49 -1.31 -2.15 16 21 C -0.10 -0.55 7.37 71.94 0.53 -0.02 16 22 C 0.09 0.68 7.44 86.43 0.64 1.33 16 23 H 0.01 0.63 7.45 -2.39 -0.02 0.61 16 24 H 0.06 3.49 6.07 -2.39 -0.01 3.47 16 25 H 0.03 1.69 8.14 -2.38 -0.02 1.67 16 26 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 27 H 0.34 14.46 8.22 -89.70 -0.74 13.72 16 28 H 0.04 2.01 7.44 -2.39 -0.02 1.99 16 29 H 0.00 0.10 8.06 -2.39 -0.02 0.08 16 30 H 0.10 2.64 8.10 -2.39 -0.02 2.62 16 31 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.21 3.10 8.06 -2.91 -0.02 3.08 16 33 H 0.15 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.15 -0.05 8.14 -2.39 -0.02 -0.07 16 35 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -78.74 311.47 0.42 -78.31 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.34 Total: 11.53 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 6.11 Total: -11.18 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -6.74 Total: -123.10 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: -0.83 SS G_CDS: -1.31 Total: -2.15 kcal Total: -78.74 0.42 -78.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393750612.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.740 kcal (2) G-P(sol) polarization free energy of solvation -78.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds