Wall clock time and date at job start Mon Mar 30 2020 06:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47109 * 2 1 4 4 C 1.50696 * 109.46765 * 240.00357 * 2 1 3 5 5 H 1.08003 * 119.99925 * 245.46312 * 4 2 1 6 6 C 1.37878 * 120.00431 * 65.46214 * 4 2 1 7 7 N 1.31508 * 119.99902 * 9.54255 * 6 4 2 8 8 Si 1.86802 * 120.00060 * 189.54487 * 6 4 2 9 9 H 1.48502 * 109.46988 * 84.99458 * 8 6 4 10 10 H 1.48504 * 109.46734 * 204.99225 * 8 6 4 11 11 H 1.48492 * 109.47183 * 324.99229 * 8 6 4 12 12 N 1.46899 * 109.46856 * 120.00577 * 2 1 3 13 13 C 1.46900 * 110.99702 * 274.99632 * 12 2 1 14 14 C 1.53783 * 113.61605 * 105.86705 * 13 12 2 15 15 C 1.54054 * 86.98576 * 140.01892 * 14 13 12 16 16 N 1.46496 * 113.68878 * 89.12943 * 15 14 13 17 17 C 1.38602 * 120.00245 * 107.46563 * 16 15 14 18 18 N 1.29692 * 124.94779 * 359.70295 * 17 16 15 19 19 C 1.32123 * 116.86358 * 179.81120 * 18 17 16 20 20 C 1.33329 * 114.58064 * 0.46846 * 19 18 17 21 21 S 1.70969 * 124.95080 * 179.97438 * 17 16 15 22 22 C 1.53781 * 87.07796 * 334.56979 * 15 14 13 23 23 H 1.09004 * 109.47212 * 183.80700 * 1 2 3 24 24 H 1.09002 * 109.47175 * 303.80360 * 1 2 3 25 25 H 1.08999 * 109.47264 * 63.80128 * 1 2 3 26 26 H 0.97005 * 120.00516 * 180.02562 * 7 6 4 27 27 H 1.00902 * 110.99624 * 151.04511 * 12 2 1 28 28 H 1.09007 * 112.84841 * 334.67100 * 13 12 2 29 29 H 1.08996 * 113.61261 * 254.61540 * 14 13 12 30 30 H 1.09002 * 113.60996 * 25.51604 * 14 13 12 31 31 H 1.08997 * 113.61467 * 220.02291 * 15 14 13 32 32 H 0.97006 * 119.99657 * 287.46798 * 16 15 14 33 33 H 1.07998 * 122.70931 * 180.22177 * 19 18 17 34 34 H 1.07993 * 125.94892 * 179.75498 * 20 19 18 35 35 H 1.08997 * 113.61685 * 270.88447 * 22 15 14 36 36 H 1.09003 * 113.61830 * 139.97565 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.5784 -1.6370 -1.1339 6 6 1.7945 -0.1773 -2.4796 7 7 1.2990 1.0356 -2.5935 8 14 2.1762 -1.1778 -4.0102 9 1 1.0243 -2.0609 -4.3243 10 1 2.4228 -0.2610 -5.1521 11 1 3.3847 -2.0068 -3.7711 12 7 2.0196 -0.6926 1.1994 13 6 2.0824 0.2224 2.3469 14 6 0.9670 -0.0077 3.3802 15 6 2.0323 0.2407 4.4649 16 7 2.1662 1.6486 4.8468 17 6 1.6936 2.0814 6.0758 18 7 1.1138 1.3263 6.9565 19 6 0.7283 1.9065 8.0792 20 6 0.9860 3.2129 8.1453 21 16 1.7841 3.6896 6.6489 22 6 3.0762 -0.2200 3.4339 23 1 -0.3634 -1.0254 0.0682 24 1 -0.3634 0.5717 0.8540 25 1 -0.3634 0.4537 -0.9221 26 1 1.1314 1.4106 -3.4723 27 1 2.9173 -1.1206 1.0286 28 1 2.1949 1.2655 2.0508 29 1 0.1840 0.7500 3.3534 30 1 0.5738 -1.0244 3.3790 31 1 1.9440 -0.4244 5.3240 32 1 2.5857 2.2781 4.2395 33 1 0.2401 1.3668 8.8772 34 1 0.7474 3.8652 8.9723 35 1 3.2586 -1.2945 3.4474 36 1 3.9948 0.3665 3.4506 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393779563.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:48 Heat of formation + Delta-G solvation = 71.754223 kcal Electronic energy + Delta-G solvation = -17645.862524 eV Core-core repulsion = 14871.482869 eV Total energy + Delta-G solvation = -2774.379655 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.89697 -38.80868 -35.36301 -33.68940 -31.67154 -29.10176 -27.98248 -25.55766 -25.04635 -24.63425 -23.14638 -20.46723 -19.97515 -19.00541 -18.46515 -16.51959 -16.22464 -15.53822 -15.10253 -14.95729 -14.71734 -14.36215 -13.95989 -13.72991 -13.05985 -12.60886 -12.32958 -12.01182 -11.66410 -11.54782 -11.50985 -10.91156 -10.78969 -10.67517 -10.50988 -10.27469 -10.09476 -10.00300 -9.62799 -9.57437 -9.30742 -8.86998 -8.44668 -7.78846 -7.32880 -6.07928 -4.10216 0.96527 1.05439 1.73672 2.95934 3.14342 3.29167 3.35506 3.37893 4.39270 4.55866 4.77342 4.89409 5.11673 5.23688 5.25725 5.32557 5.52556 5.63759 5.71681 5.88932 6.04743 6.07734 6.35572 6.42396 6.51826 6.82638 6.97333 7.08359 7.10648 7.18061 7.42095 7.77123 7.83326 7.97149 8.15611 8.34802 8.66318 9.01087 9.55001 11.01147 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.045471 B = 0.003407 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.626058 B = 8216.208968 C = 8405.348188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.210 3.790 3 H 0.008 0.992 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.893 3.107 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.676 5.676 13 C 0.066 3.934 14 C -0.134 4.134 15 C 0.132 3.868 16 N -0.671 5.671 17 C 0.332 3.668 18 N -0.554 5.554 19 C 0.088 3.912 20 C -0.308 4.308 21 S 0.073 5.927 22 C -0.150 4.150 23 H 0.033 0.967 24 H 0.008 0.992 25 H 0.060 0.940 26 H 0.261 0.739 27 H 0.334 0.666 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.414 0.586 33 H 0.172 0.828 34 H 0.171 0.829 35 H 0.100 0.900 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.754 4.075 18.581 19.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.102 3.898 3 H 0.025 0.975 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.721 3.279 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.307 5.307 13 C -0.045 4.045 14 C -0.174 4.174 15 C 0.025 3.975 16 N -0.309 5.309 17 C -0.040 4.040 18 N -0.280 5.280 19 C -0.062 4.062 20 C -0.450 4.450 21 S 0.321 5.679 22 C -0.189 4.189 23 H 0.052 0.948 24 H 0.027 0.973 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.152 0.848 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.251 0.749 33 H 0.189 0.811 34 H 0.188 0.812 35 H 0.119 0.881 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.377 4.162 18.042 18.567 hybrid contribution 0.543 -0.054 -0.743 0.922 sum 1.920 4.108 17.298 17.883 Atomic orbital electron populations 1.21624 0.98290 0.98738 0.98867 1.19167 0.92193 0.92694 0.85748 0.97477 1.21245 1.36006 1.08210 0.90706 0.92201 1.24920 0.95206 0.94607 0.99062 1.69967 1.44881 1.13985 1.23839 0.86603 0.78761 0.80066 0.82503 1.20489 1.21398 1.19967 1.60812 1.31704 1.32164 1.06028 1.23027 0.94741 0.95649 0.91085 1.23598 0.96840 1.02632 0.94315 1.21931 0.97855 0.80626 0.97137 1.43843 1.63272 1.10378 1.13407 1.23684 0.95747 0.92896 0.91623 1.66447 1.21526 1.36540 1.03533 1.21417 0.98796 0.91305 0.94685 1.26360 1.15802 1.00006 1.02815 1.84027 1.60583 1.09709 1.13572 1.23641 0.97040 1.02459 0.95805 0.94785 0.97259 0.92077 0.92902 0.84798 0.92186 0.92044 0.88632 0.87992 0.74873 0.81097 0.81156 0.88130 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.86 9.28 37.16 0.34 -2.51 16 2 C 0.21 5.20 2.46 -68.87 -0.17 5.03 16 3 H 0.01 0.21 7.41 -51.93 -0.38 -0.18 16 4 C -0.52 -14.19 8.48 -34.44 -0.29 -14.48 16 5 H 0.06 1.60 7.69 -52.48 -0.40 1.20 16 6 C 0.06 1.77 5.17 -17.82 -0.09 1.68 16 7 N -0.89 -25.43 12.16 55.43 0.67 -24.75 16 8 Si 0.89 21.15 29.55 -169.99 -5.02 16.13 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 12 N -0.68 -13.77 6.35 -100.10 -0.64 -14.41 16 13 C 0.07 1.11 3.86 -66.90 -0.26 0.85 16 14 C -0.13 -2.07 7.70 -25.77 -0.20 -2.27 16 15 C 0.13 1.75 4.44 -66.98 -0.30 1.45 16 16 N -0.67 -8.30 5.42 -54.86 -0.30 -8.59 16 17 C 0.33 4.26 8.09 -87.68 -0.71 3.55 16 18 N -0.55 -7.57 9.83 -15.21 -0.15 -7.72 16 19 C 0.09 0.97 11.34 -19.14 -0.22 0.76 16 20 C -0.31 -3.01 11.34 29.02 0.33 -2.69 16 21 S 0.07 0.77 23.22 -107.50 -2.50 -1.72 16 22 C -0.15 -1.98 7.41 -25.92 -0.19 -2.17 16 23 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 25 H 0.06 1.62 6.83 -51.93 -0.35 1.27 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.33 6.64 8.09 -39.29 -0.32 6.32 16 28 H 0.06 1.08 7.49 -51.93 -0.39 0.69 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 31 H 0.10 1.39 7.67 -51.93 -0.40 0.99 16 32 H 0.41 4.56 8.83 -40.82 -0.36 4.20 16 33 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 314.71 15.07 4.74 4.74 Total: -1.00 -29.51 314.71 -10.06 -39.58 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.12 Total: 7.55 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -1.75 Total: -10.80 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.41 Total: -55.47 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.50 Total: -1.72 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.51 -10.06 -39.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393779563.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.330 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds