Wall clock time and date at job start Mon Mar 30 2020 06:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47109 * 2 1 4 4 C 1.50696 * 109.46765 * 240.00357 * 2 1 3 5 5 H 1.08003 * 119.99925 * 245.46312 * 4 2 1 6 6 C 1.37878 * 120.00431 * 65.46214 * 4 2 1 7 7 N 1.31508 * 119.99902 * 9.54255 * 6 4 2 8 8 Si 1.86802 * 120.00060 * 189.54487 * 6 4 2 9 9 H 1.48502 * 109.46988 * 84.99458 * 8 6 4 10 10 H 1.48504 * 109.46734 * 204.99225 * 8 6 4 11 11 H 1.48492 * 109.47183 * 324.99229 * 8 6 4 12 12 N 1.46899 * 109.46856 * 120.00577 * 2 1 3 13 13 C 1.46900 * 110.99702 * 274.99632 * 12 2 1 14 14 C 1.53783 * 113.61605 * 105.86705 * 13 12 2 15 15 C 1.54054 * 86.98576 * 140.01892 * 14 13 12 16 16 N 1.46496 * 113.68878 * 89.12943 * 15 14 13 17 17 C 1.38602 * 120.00245 * 107.46563 * 16 15 14 18 18 N 1.29692 * 124.94779 * 359.70295 * 17 16 15 19 19 C 1.32123 * 116.86358 * 179.81120 * 18 17 16 20 20 C 1.33329 * 114.58064 * 0.46846 * 19 18 17 21 21 S 1.70969 * 124.95080 * 179.97438 * 17 16 15 22 22 C 1.53781 * 87.07796 * 334.56979 * 15 14 13 23 23 H 1.09004 * 109.47212 * 183.80700 * 1 2 3 24 24 H 1.09002 * 109.47175 * 303.80360 * 1 2 3 25 25 H 1.08999 * 109.47264 * 63.80128 * 1 2 3 26 26 H 0.97005 * 120.00516 * 180.02562 * 7 6 4 27 27 H 1.00902 * 110.99624 * 151.04511 * 12 2 1 28 28 H 1.09007 * 112.84841 * 334.67100 * 13 12 2 29 29 H 1.08996 * 113.61261 * 254.61540 * 14 13 12 30 30 H 1.09002 * 113.60996 * 25.51604 * 14 13 12 31 31 H 1.08997 * 113.61467 * 220.02291 * 15 14 13 32 32 H 0.97006 * 119.99657 * 287.46798 * 16 15 14 33 33 H 1.07998 * 122.70931 * 180.22177 * 19 18 17 34 34 H 1.07993 * 125.94892 * 179.75498 * 20 19 18 35 35 H 1.08997 * 113.61685 * 270.88447 * 22 15 14 36 36 H 1.09003 * 113.61830 * 139.97565 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.5784 -1.6370 -1.1339 6 6 1.7945 -0.1773 -2.4796 7 7 1.2990 1.0356 -2.5935 8 14 2.1762 -1.1778 -4.0102 9 1 1.0243 -2.0609 -4.3243 10 1 2.4228 -0.2610 -5.1521 11 1 3.3847 -2.0068 -3.7711 12 7 2.0196 -0.6926 1.1994 13 6 2.0824 0.2224 2.3469 14 6 0.9670 -0.0077 3.3802 15 6 2.0323 0.2407 4.4649 16 7 2.1662 1.6486 4.8468 17 6 1.6936 2.0814 6.0758 18 7 1.1138 1.3263 6.9565 19 6 0.7283 1.9065 8.0792 20 6 0.9860 3.2129 8.1453 21 16 1.7841 3.6896 6.6489 22 6 3.0762 -0.2200 3.4339 23 1 -0.3634 -1.0254 0.0682 24 1 -0.3634 0.5717 0.8540 25 1 -0.3634 0.4537 -0.9221 26 1 1.1314 1.4106 -3.4723 27 1 2.9173 -1.1206 1.0286 28 1 2.1949 1.2655 2.0508 29 1 0.1840 0.7500 3.3534 30 1 0.5738 -1.0244 3.3790 31 1 1.9440 -0.4244 5.3240 32 1 2.5857 2.2781 4.2395 33 1 0.2401 1.3668 8.8772 34 1 0.7474 3.8652 8.9723 35 1 3.2586 -1.2945 3.4474 36 1 3.9948 0.3665 3.4506 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393779563.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:47 Heat of formation + Delta-G solvation = 52.494942 kcal Electronic energy + Delta-G solvation = -17646.697669 eV Core-core repulsion = 14871.482869 eV Total energy + Delta-G solvation = -2775.214801 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.91930 -39.90486 -36.99194 -35.05505 -33.48209 -30.20022 -29.56045 -27.32026 -26.51819 -25.67205 -24.34683 -21.94987 -21.42687 -19.96746 -19.55917 -18.42492 -17.25652 -16.83142 -16.58674 -16.23750 -15.77666 -15.57383 -15.47327 -15.16222 -14.38538 -13.98936 -13.64230 -13.47988 -13.25700 -13.07031 -12.74019 -12.63977 -12.47219 -12.33444 -12.27945 -11.91812 -11.54933 -11.35599 -11.04849 -10.78285 -10.52360 -10.48725 -10.16642 -9.06095 -8.66986 -8.17532 -6.26932 0.10990 0.19536 0.92606 1.41478 1.43894 1.52326 2.08889 2.23383 2.41426 3.14390 3.57773 3.66344 3.70146 3.75875 4.06500 4.27111 4.55504 4.61342 4.75311 4.81447 4.82709 4.90586 5.00334 5.07934 5.12539 5.13771 5.24313 5.32548 5.47102 5.67919 5.81655 5.97492 6.16076 6.18253 6.49077 6.83004 7.03914 7.10147 7.43061 8.91306 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.045471 B = 0.003407 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.626058 B = 8216.208968 C = 8405.348188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.216 3.784 3 H -0.027 1.027 4 C -0.540 4.540 5 H 0.061 0.939 6 C 0.015 3.985 7 N -0.920 5.920 8 Si 0.958 3.042 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.265 1.265 12 N -0.673 5.673 13 C 0.055 3.945 14 C -0.132 4.132 15 C 0.151 3.849 16 N -0.675 5.675 17 C 0.307 3.693 18 N -0.580 5.580 19 C 0.066 3.934 20 C -0.296 4.296 21 S 0.095 5.905 22 C -0.130 4.130 23 H 0.034 0.966 24 H 0.021 0.979 25 H 0.034 0.966 26 H 0.262 0.738 27 H 0.336 0.664 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.418 0.582 33 H 0.195 0.805 34 H 0.200 0.800 35 H 0.111 0.889 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.342 3.786 19.876 20.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.107 3.893 3 H -0.009 1.009 4 C -0.578 4.578 5 H 0.079 0.921 6 C -0.184 4.184 7 N -0.559 5.559 8 Si 0.783 3.217 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.190 1.190 12 N -0.303 5.303 13 C -0.055 4.055 14 C -0.172 4.172 15 C 0.042 3.958 16 N -0.313 5.313 17 C -0.064 4.064 18 N -0.307 5.307 19 C -0.083 4.083 20 C -0.437 4.437 21 S 0.342 5.658 22 C -0.169 4.169 23 H 0.053 0.947 24 H 0.040 0.960 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.155 0.845 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.257 0.743 33 H 0.211 0.789 34 H 0.217 0.783 35 H 0.129 0.871 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.969 3.878 19.373 19.855 hybrid contribution 0.323 0.122 -1.034 1.090 sum 2.292 4.000 18.339 18.909 Atomic orbital electron populations 1.21444 0.98209 0.98571 0.97999 1.18938 0.92219 0.90994 0.87154 1.00934 1.21598 1.36049 1.08324 0.91836 0.92072 1.25726 0.95124 0.95474 1.02114 1.70089 1.45887 1.15417 1.24492 0.85574 0.78810 0.78570 0.78703 1.20161 1.21137 1.18970 1.60727 1.31929 1.32477 1.05194 1.23118 0.97489 0.94401 0.90534 1.23555 0.96659 1.01922 0.95074 1.21650 0.96323 0.81411 0.96376 1.43757 1.63794 1.10051 1.13743 1.23880 0.96625 0.94126 0.91784 1.66447 1.21866 1.37936 1.04477 1.21819 0.99607 0.92126 0.94739 1.26794 1.13948 0.99997 1.02962 1.83964 1.60078 1.07986 1.13725 1.23530 0.96856 1.03280 0.93258 0.94693 0.95993 0.94692 0.92893 0.84540 0.93595 0.93531 0.89009 0.87892 0.74350 0.78866 0.78261 0.87060 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.17 9.28 71.98 0.67 -4.50 16 2 C 0.22 10.91 2.46 44.17 0.11 11.02 16 3 H -0.03 -1.53 7.41 -2.39 -0.02 -1.54 16 4 C -0.54 -29.47 8.48 25.60 0.22 -29.25 16 5 H 0.06 3.25 7.69 -2.91 -0.02 3.23 16 6 C 0.02 0.84 5.17 84.66 0.44 1.27 16 7 N -0.92 -53.54 12.16 21.45 0.26 -53.28 16 8 Si 0.96 43.36 29.55 68.60 2.03 45.39 16 9 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 12 N -0.67 -27.41 6.35 -470.61 -2.99 -30.40 16 13 C 0.06 1.84 3.86 45.44 0.18 2.02 16 14 C -0.13 -4.06 7.70 31.21 0.24 -3.82 16 15 C 0.15 3.83 4.44 45.61 0.20 4.03 16 16 N -0.67 -16.15 5.42 -327.46 -1.78 -17.92 16 17 C 0.31 7.54 8.09 179.32 1.45 8.99 16 18 N -0.58 -15.15 9.83 -202.02 -1.99 -17.14 16 19 C 0.07 1.33 11.34 83.54 0.95 2.28 16 20 C -0.30 -5.04 11.34 66.71 0.76 -4.28 16 21 S 0.09 1.83 23.22 -56.49 -1.31 0.52 16 22 C -0.13 -3.23 7.41 31.12 0.23 -3.00 16 23 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.02 0.98 8.13 -2.39 -0.02 0.96 16 25 H 0.03 1.89 6.83 -2.39 -0.02 1.87 16 26 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 27 H 0.34 13.24 8.09 -89.69 -0.73 12.51 16 28 H 0.05 1.68 7.49 -2.38 -0.02 1.67 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.10 2.67 7.67 -2.39 -0.02 2.65 16 32 H 0.42 8.98 8.83 -92.70 -0.82 8.16 16 33 H 0.19 2.76 8.06 -2.91 -0.02 2.73 16 34 H 0.20 2.10 8.06 -2.91 -0.02 2.08 16 35 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -63.24 314.71 -0.79 -64.03 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -0.45 Total: 24.04 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 5.44 Total: -15.24 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -6.49 Total: -118.74 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.31 Total: 0.52 kcal Total: -63.24 -0.79 -64.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393779563.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.527 kcal (2) G-P(sol) polarization free energy of solvation -63.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds