Wall clock time and date at job start Mon Mar 30 2020 04:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.27311 * 57.90783 * 9 7 2 11 11 C 1.54599 * 110.30641 * 295.71656 * 9 7 2 12 12 C 1.54942 * 102.92043 * 219.12506 * 11 9 7 13 13 N 1.48535 * 103.22593 * 37.41662 * 12 11 9 14 14 C 1.46897 * 111.00063 * 200.27918 * 13 12 11 15 15 C 1.52996 * 109.47044 * 287.39798 * 14 13 12 16 16 H 1.09002 * 109.47201 * 305.00133 * 15 14 13 17 17 O 1.42897 * 109.47402 * 64.99805 * 15 14 13 18 18 C 1.53004 * 109.47498 * 184.99973 * 15 14 13 19 19 C 1.52990 * 109.47517 * 175.00047 * 18 15 14 20 20 F 1.39898 * 109.47450 * 59.99524 * 19 18 15 21 21 F 1.39901 * 109.47358 * 180.02562 * 19 18 15 22 22 F 1.39908 * 109.47122 * 299.99714 * 19 18 15 23 23 C 1.47907 * 105.81946 * 320.79101 * 13 12 11 24 24 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 25 25 H 1.08997 * 110.72959 * 337.48582 * 11 9 7 26 26 H 1.09007 * 110.72004 * 100.77146 * 11 9 7 27 27 H 1.09004 * 110.66755 * 278.98173 * 12 11 9 28 28 H 1.08997 * 110.80807 * 155.91820 * 12 11 9 29 29 H 1.09003 * 109.47069 * 47.39226 * 14 13 12 30 30 H 1.08992 * 109.47527 * 167.39736 * 14 13 12 31 31 H 0.96705 * 114.00416 * 59.99929 * 17 15 14 32 32 H 1.09007 * 109.46616 * 295.00282 * 18 15 14 33 33 H 1.09002 * 109.46980 * 54.99332 * 18 15 14 34 34 H 1.08999 * 109.91413 * 265.97901 * 23 13 12 35 35 H 1.08998 * 109.91352 * 144.68756 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5915 -2.5544 -0.8665 11 6 0.4385 -2.6495 1.3060 12 6 0.6034 -4.1523 1.6456 13 7 2.0066 -4.4379 1.2508 14 6 2.2125 -5.8775 1.0435 15 6 2.2148 -6.5923 2.3961 16 1 2.9605 -6.1359 3.0471 17 8 0.9237 -6.4779 2.9976 18 6 2.5528 -8.0705 2.1914 19 6 2.6777 -8.7584 3.5522 20 9 1.4664 -8.6484 4.2433 21 9 2.9874 -10.1098 3.3649 22 9 3.6944 -8.1459 4.2928 23 6 2.2346 -3.6841 -0.0012 24 1 -0.4850 -0.8401 0.0004 25 1 0.8592 -2.0272 2.0958 26 1 -0.6104 -2.4049 1.1382 27 1 -0.0910 -4.7570 1.0622 28 1 0.4608 -4.3262 2.7121 29 1 1.4079 -6.2741 0.4243 30 1 3.1682 -6.0398 0.5452 31 1 0.2093 -6.8638 2.4722 32 1 1.7607 -8.5477 1.6143 33 1 3.4967 -8.1561 1.6529 34 1 2.0424 -4.3257 -0.8611 35 1 3.2600 -3.3156 -0.0312 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397591677.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:41 Heat of formation + Delta-G solvation = -214.293378 kcal Electronic energy + Delta-G solvation = -21095.544315 eV Core-core repulsion = 17291.858342 eV Total energy + Delta-G solvation = -3803.685973 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.21282 -47.75645 -47.63558 -38.97790 -37.03579 -33.48014 -32.46582 -30.37108 -28.24860 -26.86822 -24.08414 -23.27249 -21.86714 -20.41375 -19.66437 -18.67904 -18.53052 -17.77648 -16.90823 -16.31867 -15.83295 -15.08534 -14.87751 -14.55220 -14.51849 -14.12235 -13.85622 -13.81800 -13.74861 -13.58951 -13.22502 -12.84825 -12.49421 -12.12767 -12.06810 -11.70024 -11.27506 -11.08880 -10.95225 -10.73524 -10.51028 -10.09907 -10.04290 -9.69166 -9.58593 -8.44602 -8.32562 -7.88905 -6.31177 -4.02445 2.58452 3.46016 3.49572 3.56311 3.63093 3.71839 3.82313 4.29441 4.38414 4.55610 4.74049 4.83682 4.98416 5.06882 5.22870 5.40288 5.55531 5.66429 5.89162 5.93266 6.09210 6.14419 6.50243 6.67881 6.86197 7.03032 7.23163 7.32230 7.48280 7.61163 7.76720 8.25795 8.47023 8.91521 9.68621 11.07199 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.046757 B = 0.003797 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.691331 B = 7372.942174 C = 7498.218608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.018 3.982 3 Si 1.073 2.927 4 H -0.290 1.290 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.587 4.587 8 H 0.051 0.949 9 C 0.024 3.976 10 H 0.019 0.981 11 C -0.112 4.112 12 C 0.037 3.963 13 N -0.510 5.510 14 C 0.019 3.981 15 C 0.112 3.888 16 H 0.119 0.881 17 O -0.542 6.542 18 C -0.202 4.202 19 C 0.457 3.543 20 F -0.173 7.173 21 F -0.191 7.191 22 F -0.183 7.183 23 C 0.051 3.949 24 H 0.271 0.729 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.024 0.976 28 H 0.084 0.916 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.370 0.630 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.019 0.981 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.718 -18.192 3.737 18.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.186 4.186 3 Si 0.902 3.098 4 H -0.216 1.216 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.626 4.626 8 H 0.069 0.931 9 C 0.005 3.995 10 H 0.037 0.963 11 C -0.151 4.151 12 C -0.090 4.090 13 N -0.234 5.234 14 C -0.110 4.110 15 C 0.052 3.948 16 H 0.137 0.863 17 O -0.347 6.347 18 C -0.241 4.241 19 C 0.402 3.598 20 F -0.154 7.154 21 F -0.172 7.172 22 F -0.164 7.164 23 C -0.076 4.076 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.218 0.782 32 H 0.128 0.872 33 H 0.136 0.864 34 H 0.037 0.963 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.249 -16.103 4.631 17.286 hybrid contribution -0.575 -2.510 -1.006 2.765 sum 3.674 -18.613 3.625 19.316 Atomic orbital electron populations 1.70739 1.06863 1.30900 1.46671 1.25778 0.96563 1.02545 0.93717 0.83491 0.74517 0.74974 0.76862 1.21561 1.21393 1.21514 1.22042 0.93989 0.91108 1.55415 0.93080 1.19652 0.93104 0.93672 0.93069 0.96302 1.22719 0.99272 0.92667 1.00450 1.23390 0.87367 0.97676 1.00556 1.64697 1.24163 1.04008 1.30483 1.22849 1.01536 0.91477 0.95159 1.21943 0.87177 0.89463 0.96234 0.86308 1.86742 1.15872 1.82510 1.49560 1.23684 1.07772 0.99730 0.92948 1.20396 0.74012 0.76635 0.88708 1.93229 1.44772 1.95682 1.81761 1.93178 1.93111 1.35543 1.95418 1.93192 1.60823 1.82769 1.79660 1.22987 1.01871 0.94909 0.87818 0.91763 0.91391 0.93059 0.95738 0.89805 0.94692 0.90234 0.78242 0.87160 0.86378 0.96307 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.27 13.45 55.43 0.75 -26.52 16 2 C 0.02 0.51 5.34 -17.82 -0.10 0.41 16 3 Si 1.07 25.27 29.90 -169.99 -5.08 20.19 16 4 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.59 -16.32 8.38 -34.44 -0.29 -16.61 16 8 H 0.05 1.43 7.34 -52.49 -0.39 1.04 16 9 C 0.02 0.59 2.54 -90.41 -0.23 0.36 16 10 H 0.02 0.50 7.95 -51.93 -0.41 0.09 16 11 C -0.11 -2.58 5.57 -24.87 -0.14 -2.72 16 12 C 0.04 0.69 5.33 -1.89 -0.01 0.68 16 13 N -0.51 -9.20 5.24 -230.45 -1.21 -10.40 16 14 C 0.02 0.25 4.52 -3.83 -0.02 0.23 16 15 C 0.11 1.25 3.12 -26.73 -0.08 1.17 16 16 H 0.12 1.53 7.66 -51.93 -0.40 1.13 16 17 O -0.54 -6.59 9.17 -35.23 -0.32 -6.91 16 18 C -0.20 -1.62 5.01 -26.73 -0.13 -1.75 16 19 C 0.46 4.63 3.16 37.15 0.12 4.74 16 20 F -0.17 -2.02 15.75 2.25 0.04 -1.99 16 21 F -0.19 -1.95 17.32 2.25 0.04 -1.91 16 22 F -0.18 -2.14 16.71 2.25 0.04 -2.10 16 23 C 0.05 1.06 6.31 -2.75 -0.02 1.04 16 24 H 0.27 7.96 5.65 -40.82 -0.23 7.73 16 25 H 0.07 1.72 7.86 -51.93 -0.41 1.32 16 26 H 0.05 1.19 7.10 -51.93 -0.37 0.82 16 27 H 0.02 0.41 7.81 -51.93 -0.41 0.01 16 28 H 0.08 1.51 6.79 -51.93 -0.35 1.16 16 29 H 0.03 0.42 7.83 -51.93 -0.41 0.02 16 30 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 31 H 0.37 3.31 9.05 45.56 0.41 3.72 16 32 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.12 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.02 0.35 7.77 -51.93 -0.40 -0.05 16 35 H 0.07 1.59 7.39 -51.93 -0.38 1.20 16 LS Contribution 292.70 15.07 4.41 4.41 Total: -1.00 -31.02 292.70 -6.05 -37.06 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -3.80 Total: 0.60 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -0.90 Total: -12.44 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.46 Total: -36.93 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.32 Total: -6.91 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.11 Total: -5.99 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -5.08 Total: 20.19 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.02 -6.05 -37.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397591677.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.229 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds